New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3220891NA (NA)3 (0.040) 3/240 NT NA noncoding (12/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3220898 NA (NA)noncoding (19/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences

ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3220732‑3220891
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGCGTTA  <  NC_000913/3220898‑3220753
                                                                                                                                                                                                                                                                                                                  
ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAA                                                                                                                                                               >  2:139748/1‑149
ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAA                                                                                                                                                               >  2:219128/1‑149
    GTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATC                                                                                                                                                             <  3:124361/147‑1
          GGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG                                                                                                                                                     >  6:224882/1‑149
                               ACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATT                                                                                                                                <  5:224882/149‑1
                                                               CATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTAC                                                                                                                       <  3:95529/126‑1
                                                               CATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTAC                                                                                                                       >  4:95529/1‑126
                                                                                                                                                     TCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTT          <  6:354263/149‑1
                                                                                                                                                       GGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGCTCACCAGTTCACACTGTTCAATGGTCAGTGGCAGTGGCGGTTCAATGCGGATCGTTTTG        >  5:98184/1‑149
                                                                                                                                                       GGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTG        <  2:363073/149‑1
                                                                                                                                                       GGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGACCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTG        <  8:281743/149‑1
                                                                                                                                                        GATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGG       >  8:43352/1‑149
                                                                                                                                                         ATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGC      <  6:148994/149‑1
                                                                                                                                                         ATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATG                                            <  3:105377/111‑1
                                                                                                                                                         ATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATG                                            >  4:105377/1‑111
                                                                                                                                                             CGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAGTGCGGATCGTTTTGGCGTTA  <  5:285827/149‑1
                                                                                                                                                                                                                                                                                                                  
ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3220732‑3220891
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTTCAATGGTCAGTGTCAGTGGCGGTTCAATGCGGATCGTTTTGGCGTTA  <  NC_000913/3220898‑3220753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.