New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1972664 =	72 (0.800)	4 (0.050)	4/238	NT	5.2%	coding (28/1662 nt)	tar	methyl‑accepting chemotaxis protein II
	?	NC_000913	1972676 =	76 (0.880)					coding (16/1662 nt)	tar	methyl‑accepting chemotaxis protein II

AATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTTCGCGGCGGGTGGCATCAGCAATAAAGTTTCCCCCCTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTAGTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1972813‑1972664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGA  >  NC_000913/1972676‑1972821                                                                                                                                                                                                                                                                                                          AATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTTCGCGGCGGGTGGCATCAGCAATAAAGTTTCCCCCCTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTAGTCAC                                                                                                                                                      >  1:95658/1‑148                                                                                                                          TATGATTAACCGTATCCGCGTAGTCACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGA                                                                                        <  7:22436/89‑1                                                                                                                          TATGATTAACCGTATCCGCGTAGTCACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGA                                                                                        >  8:22436/1‑89                                                                                                                            TGATTAACCGTATCCGCGTAGTCACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAG                                                                                       <  5:171175/88‑1                                                                                                                            TGATTAACCGTATCCGCGTAGTCACGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAG                                                                                       >  6:171175/1‑88                                                                                                                                                    CGCTGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAATGAGGGTGGAAACTTTATTGCTGATGCCACCCGCCGCTAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTG   <  3:176404/148‑1                                                                                                                                                    CGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTG   <  2:106840/148‑1                                                                                                                                                     GCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGA  <  7:128674/148‑1                                                                                                                                                      CGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTCAAGCCCCCCGCCGCGAAATTGAAATAAAAAACCCctagg                             >  8:89901/1‑115                                                                                                                                                                                                                                                                                                          AATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTTCGCGGCGGGTGGCATCAGCAATAAAGTTTCCCCCCTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTAGTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1972813‑1972664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGA  >  NC_000913/1972676‑1972821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.