| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,877,011 | G→A | intergenic (‑59/+56) | yidA ← / ← yidB | sugar phosphate phosphatase/DUF937 family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,877,011 | 0 | G | A | 78.6% | 52.6 / 9.5 | 28 | intergenic (‑59/+56) | yidA/yidB | sugar phosphate phosphatase/DUF937 family protein |
| Reads supporting (aligned to +/- strand): ref base G (3/3); new base A (12/10); total (15/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGCAGATCGTTATTGGCTTGTGGTGACACTTCACCTTGCGGTGAGAGC > NC_000913/3876870‑3877157 | gCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaaca > 5:139220/1‑149 (MQ=255) ttAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGa < 5:93180/148‑1 (MQ=255) ggcggGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGaa > 6:25748/1‑148 (MQ=255) ggcggGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGaa > 5:150768/1‑148 (MQ=255) tGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAgggg > 6:115797/1‑148 (MQ=255) tgtgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAgg > 8:130566/1‑138 (MQ=255) tgtgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAgg < 7:130566/138‑1 (MQ=255) cagcagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGt < 5:25748/149‑1 (MQ=255) catATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGc < 5:115797/149‑1 (MQ=255) catATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGc < 6:150768/149‑1 (MQ=255) atatCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCg > 7:64217/1‑149 (MQ=255) aTAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACACCACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAagag > 8:36519/1‑149 (MQ=255) aTGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGG‑AAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCt > 2:18101/1‑131 (MQ=255) aTGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGG‑AAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCt < 1:18101/131‑1 (MQ=255) aGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGc < 8:64217/148‑1 (MQ=255) ccAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCttt < 7:37517/128‑1 (MQ=255) ccAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCttt > 8:37517/1‑128 (MQ=255) aGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGa > 4:113462/1‑147 (MQ=255) gTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGtt > 4:138864/1‑86 (MQ=255) gTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGtt < 3:138864/86‑1 (MQ=255) gATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAg > 3:127445/1‑145 (MQ=255) aTTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGCAGAt < 7:36519/149‑1 (MQ=255) gATTCCGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGCAGATCGTTATTGGCTTGTGGTGACACtt > 4:70681/1‑148 (MQ=255) cGCTCAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGCAGATCGTTATTGGCTTGTGGTGACACTTCACCtt > 5:169613/1‑149 (MQ=255) cAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGc > 4:135099/1‑111 (MQ=255) cAAAAATCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGc < 3:135099/111‑1 (MQ=255) aTCAATACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGCAGATCGTTATTGGCTTGTGGTGACACTTCACCTTGCGGTgaga < 3:70681/149‑1 (MQ=255) aGTACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGGGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGCAGATCGTTATTGGCTTGTGGTGACACTTCACCTTGCGGTGAGAgc < 6:139220/148‑1 (MQ=255) | GCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGCGCGTTGCGTGCTCCCTTTTTGCTTAGCGGAAGAGTTTCCCTTTCAGCAGTTCCATGCCTGCGGAAAGCAGATCGTTATTGGCTTGTGGTGACACTTCACCTTGCGGTGAGAGC > NC_000913/3876870‑3877157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |