New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1494121	88 (1.010)	3 (0.030)	3/262	NT	3.2%	intergenic (+11/+27)	trg/ydcI	methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor/putative DNA‑binding transcriptional regulator
	?	NC_000913	= 1494141	94 (1.090)					intergenic (+31/+7)	trg/ydcI	methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor/putative DNA‑binding transcriptional regulator
Rejected: Frequency below/above cutoff threshold.

GCCTCAGCGGCGGCGGTGTCCCTTGAAGAACAGGCGGCACGATTAACTGAGGCGGTGGATGTATTCCGTCTGCACAAACATTCTGTGTCGGCAGAACCTCGCGGAGCGGGTGAACCAGTTAGTTTCGCTACGGTGTGAAAATGTTCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1493973‑1494121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAAGGGATCTGTCGATCCCTCCTTGAACATTTTCACACCGTAGCGAAACTAACTGGTTCACCCGCTCC  <  NC_000913/1494141‑1494075                                                                                                                                                                                                                          GCCTCAGCGGCGGCGGTGTCCCTTGAAGAACAGGCGGCACGATTAACTGAGGCGGGGGATGTATTCCGTCTGCACAAACATTCTGTGTCGGCAGAACCTCGCGGAGCGGGTGAACCAGTTAGTTTCGCTACGGTGTGAAAATGTTCAAG                                                                     <  7:396489/149‑1                                                  AGGCGGTGGATGTATTCCGTCTGCACAAACATTCTGTGGCGGCAGAACCTCGCGGAGCGGGTGAACCAGTTAGTTTCGCTACGGTGTGAAAATGTTCAAGAAGGGATCTGTCGATCCCTCCTTGAACATTTTCACACCGTAGCGAAA                      <  3:105251/147‑1                                                                       TGCACAAACATTCTGTGTCGGCAGAACCTCGCGGAGCGGGTGAACCTGTTAGTTTCGCTACGGTGTGAAAATGTTCAAGAAGGGATCTGTCGATCCCTCCTTGAACATTTTCACACCGTAGCGAAACTAACTGGTTCACCCGCTCC  <  6:359124/146‑1                                                                       TGCACAAACATTCTGTGTCGGCAGAACCTCGCGGAGCGGGTGAACCCGTTAGTTTCGCTACGGTGTGAAAATGTTCAAGAAGGGATCTGTCGATCCCTCCTTGAACATTTTCACACCGTAGCGAAACTAACTGGTTCACCCGCACC  >  5:359124/1‑146                                                                                                                                                                                                                          GCCTCAGCGGCGGCGGTGTCCCTTGAAGAACAGGCGGCACGATTAACTGAGGCGGTGGATGTATTCCGTCTGCACAAACATTCTGTGTCGGCAGAACCTCGCGGAGCGGGTGAACCAGTTAGTTTCGCTACGGTGTGAAAATGTTCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1493973‑1494121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAAGGGATCTGTCGATCCCTCCTTGAACATTTTCACACCGTAGCGAAACTAACTGGTTCACCCGCTCC  <  NC_000913/1494141‑1494075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.