mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 118 (1.360) | 5 (0.060) | 5/246 | NT | 3.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 134 (1.660) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3880427 = | 143 (1.650) | 3 (0.040) | 3/254 | NT | 2.1% | coding (795/1074 nt) | recF | gap repair protein |
| ? | NC_000913 | 3880485 = | 145 (1.740) | coding (737/1074 nt) | recF | gap repair protein | |||||
| * | ? | NC_000913 | 3854880 = | 125 (1.440) | 3 (0.040) | 3/246 | NT | 2.6% | coding (959/1185 nt) | emrD | multidrug efflux system protein |
| ? | NC_000913 | 3854940 = | 107 (1.330) | coding (1019/1185 nt) | emrD | multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 3846700 | 155 (1.790) | 3 (0.040) | 3/252 | NT | 1.9% | coding (468/1392 nt) | uhpT | hexose phosphate transporter |
| ? | NC_000913 | = 3846705 | 155 (1.870) | coding (463/1392 nt) | uhpT | hexose phosphate transporter | |||||
| * | ? | NC_000913 | = 3830535 | 135 (1.560) | 3 (0.040) | 3/252 | NT | 2.3% | coding (79/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | = 3830549 | 125 (1.510) | coding (93/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein | |||||
| * | ? | NC_000913 | = 3786857 | 134 (1.550) | 3 (0.040) | 3/254 | NT | 2.3% | coding (20/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | NC_000913 | = 3786862 | 130 (1.560) | coding (25/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | NC_000913 | = 3779138 | 144 (1.660) | 5 (0.060) | 5/248 | NT | 3.5% | coding (85/777 nt) | lldR | dual role activator/repressor for lldPRD operon |
| ? | NC_000913 | = 3779144 | 141 (1.730) | coding (91/777 nt) | lldR | dual role activator/repressor for lldPRD operon | |||||
| * | ? | NC_000913 | = 3775590 | 165 (1.900) | 3 (0.040) | 3/248 | NT | 1.9% | coding (19/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | = 3775594 | 161 (1.980) | coding (23/588 nt) | mtlR | mannitol operon repressor | |||||
| * | ? | NC_000913 | 3733909 = | 162 (1.870) | 3 (0.040) | 3/250 | NT | 2.0% | coding (190/1182 nt) | xylH | D‑xylose ABC transporter permease |
| ? | NC_000913 | 3733935 = | 137 (1.670) | coding (216/1182 nt) | xylH | D‑xylose ABC transporter permease | |||||
| * | ? | NC_000913 | 3708366 = | 150 (1.730) | 7 (0.090) | 7/248 | NT | 4.9% | intergenic (‑661/+250) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| ? | NC_000913 | 3708390 = | 132 (1.620) | intergenic (‑685/+226) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro | |||||