New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2453080	56 (0.650)	3 (0.040)	3/252	NT	5.5%	pseudogene (1922/2646 nt)	yfcU	pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein
	?	NC_000913	= 2453107	50 (0.600)					pseudogene (1895/2646 nt)	yfcU	pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein

AGCAGGCGTGTCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTA  >  NC_000913/2452939‑2453226                                                                                                                                              |                                                                                                                                                   agcagGCGTGTCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGCCAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCCACCTGCGCCAGCGAACcat                                                                                                                                              >  3:100454/1‑148 (MQ=255)   cagGCGTGTCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACcatcat                                                                                                                                           <  7:173331/149‑1 (MQ=255)   cacgCGTGTCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGGAGTACGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACcatcat                                                                                                                                           <  5:116893/146‑1 (MQ=255)    agGCGTGGCCCGCCCATATTGTGGGTACGGTGACGGGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGTGGTGTATTGCCCTTCAGGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATg                                                                                                                                          <  4:100454/149‑1 (MQ=255)      gCGTGTCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGc                                                                                                                                        <  5:229712/149‑1 (MQ=255)           tCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACcatcat                                                                                                                                           <  4:173129/141‑1 (MQ=255)           tCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACcatcat                                                                                                                                           >  3:173129/1‑141 (MQ=255)             ccGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGCACCATCATGCCTgtag                                                                                                                                   >  8:154467/1‑147 (MQ=255)              cGCACATATTCTGGGTACGGTGAAGTGAGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGtagtag                                                                                                                                <  4:275368/149‑1 (MQ=255)               gCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGttgatggctactacagccat                                                                                                                                >  2:330843‑M1/1‑128 (MQ=255)                  cATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATTGCTGTAGTAGCCAt                                                                                                                            <  8:40961/149‑1 (MQ=255)                        cTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAAcg                                                                                                                       >  3:121535‑M2/1‑146 (MQ=255)                         tGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAAcgct                                                                                                                     <  3:284449‑M2/149‑5 (MQ=255)                           ggTATGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAAcgctgg                                                                                                                   >  1:180296‑M2/1‑143 (MQ=255)                           ggTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAAcgctg                                                                                                                    >  8:178388‑M2/1‑143 (MQ=255)                           ggTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAAcgctg                                                                                                                    >  6:82238‑M2/1‑143 (MQ=255)                           ggTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAAcgct                                                                                                                     >  8:238958‑M2/1‑143 (MQ=255)                               cGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGttgatggctactacagccatgatggttcgctggcgca                                                                                                               <  1:330843‑M1/149‑38 (MQ=255)                               cGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGttgatggctactacagccatgatggttcgctggcgc                                                                                                                <  1:354858‑M1/148‑37 (MQ=255)                                ggTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGgtgtgt                                                                                                              <  2:50191/149‑1 (MQ=255)                                    aaGTGCGCAGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTg                                                                                                           <  7:373977/148‑1 (MQ=255)                                      gTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCa                                                                                                        >  3:352091/1‑149 (MQ=255)                                      gTGCGCCGCCGTGGGTAGTAAGCGGTGCGCCGCCCTGGAACGACAAGCCCGCAGCGGTGTATTGCCCTTCATGGTAGTTCGCAGTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCa                                                                                                        <  4:173817/149‑1 (MQ=255)                                        gcgcCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACt                                                                                                      >  4:116561/1‑149 (MQ=255)                                         cgccgcCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTg                                                                                                     <  2:189081/149‑1 (MQ=255)                                            cgccgTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTg                                                                                                  <  3:33933/149‑1 (MQ=255)                                             gccgTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGc                                                                                                 <  6:153574/149‑1 (MQ=255)                                                    gtagtaAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGtt                                                                                          <  6:339750/149‑1 (MQ=255)                                                       gtaAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTgta                                                                                                                                    >  6:196696/1‑104 (MQ=255)                                                       gtaAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTgta                                                                                                                                    <  5:196696/104‑1 (MQ=255)                                                        taAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAAc                                                                                      <  4:141292/149‑1 (MQ=255)                                                         aaGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATc                                                                                                                           >  8:228712/1‑111 (MQ=255)                                                         aaGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATc                                                                                                                           <  7:228712/111‑1 (MQ=255)                                                           gCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGgt                                                                                                                  >  6:149287/1‑118 (MQ=255)                                                           gCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGgt                                                                                                                  <  5:149287/118‑1 (MQ=255)                                                             gTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATa                                                                                 <  8:196579/149‑1 (MQ=255)                                                                gcgcCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGt                                                                               <  4:284449/148‑1 (MQ=255)                                                                gcgcCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGt                                                                               <  3:116561/148‑1 (MQ=255)                                                                  gcctccCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCGGCGCCAGCGAACCATCATGGCTGTATTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGa                                                                             <  1:93153/148‑1 (MQ=255)                                                                    cgccCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTc                                                                          <  4:73193/149‑1 (MQ=255)                                                                           tAACTACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCAt                                                                   >  7:87124/1‑149 (MQ=255)                                                                                    gCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGc                                                          >  6:142985/1‑149 (MQ=255)                                                                                        gCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTaa                                                       >  7:333931/1‑148 (MQ=255)                                                                                                gtATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGa                                              >  6:196970/1‑149 (MQ=255)                                                                                                        cTTCATGGTAGTTCGCAGTGAGGTCAACCTGCGCCAGCGAACGATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctg                                      <  7:393097/149‑1 (MQ=255)                                                                                                        cTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctg                                      <  4:352091/149‑1 (MQ=255)                                                                                                         ttCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctgc                                     >  5:2588/1‑149 (MQ=255)                                                                                                         ttCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctgc                                     >  6:218071/1‑149 (MQ=255)                                                                                                          tCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGgctgct                                    >  6:219680/1‑149 (MQ=255)                                                                                                           cATGGTAGTTCGCACTGACGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGAGTCATCGACACGGCTAAAATAACCGACCTGGctgctg                                   >  2:238939/1‑149 (MQ=255)                                                                                                            aTGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgt                                  >  2:19320/1‑149 (MQ=255)                                                                                                            aTGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgt                                  >  6:87494/1‑149 (MQ=255)                                                                                                               gTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTgtcc                                <  4:158534/148‑1 (MQ=255)                                                                                                                      gCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACt                        <  8:87124/149‑1 (MQ=255)                                                                                                                        aCTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGc                      >  3:184594/1‑149 (MQ=255)                                                                                                                        aCTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGc                      >  6:98533/1‑149 (MQ=255)                                                                                                                          tGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCa                    >  3:336142/1‑149 (MQ=255)                                                                                                                          tGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCa                    >  7:79307/1‑149 (MQ=255)                                                                                                                             ggTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAg                 <  5:196970/149‑1 (MQ=255)                                                                                                                                cAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATa                  <  2:393939/145‑1 (MQ=255)                                                                                                                                cAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATa                  >  1:393939/1‑145 (MQ=255)                                                                                                                                     tGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAAcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccg         <  1:330843‑M2/149‑113 (MQ=255)                                                                                                                                      gcgcCAGCGAACCATCATGGCTGTAGTAGCCATCAAcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccg         <  1:354858‑M2/148‑113 (MQ=255)                                                                                                                                       cgcCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTta        <  6:2588/148‑1 (MQ=255)                                                                                                                                       cgcCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTta        <  5:98533/148‑1 (MQ=255)                                                                                                                                        gcCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTtata      <  5:219680/149‑1 (MQ=255)                                                                                                                                         ccAGCGttgatggctactacagccatgatggttcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccatacc     >  1:180296‑M1/1‑6 (MQ=255)                                                                                                                                         ccAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAg     <  1:398776/149‑1 (MQ=255)                                                                                                                                          cAGCGttgatggctactacagccatgatggttcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccgtacc     >  6:82238‑M1/1‑5 (MQ=255)                                                                                                                                          cAGCGttgatggctactacagccatgatggttcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccgtacc     >  8:178388‑M1/1‑5 (MQ=255)                                                                                                                                           aGCGttgatggctactacagccatgatggttcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccgtaccca   <  3:284449‑M1/149‑146 (MQ=255)                                                                                                                                           aGCGttgatggctactacagccatgatggttcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccgtacc     >  8:238958‑M1/1‑4 (MQ=255)                                                                                                                                             cGttgatggctactacagccatgatggttcgctggcgcaggttgacctcagtgcgaactaccatgaagggcaatacacctctgcgggcttgtcgttacagggcggcgcaacgcttactacccacggcggcgcacttcaccgtacccag  >  3:121535‑M1/1‑2 (MQ=255)                                                                                                                                              |                                                                                                                                                   AGCAGGCGTGTCCCGCCCATATTCTGGGTACGGTGAAGTGCGCCGCCGTGGGTAGTAAGCGTTGCGCCGCCCTGTAACGACAAGCCCGCAGAGGTGTATTGCCCTTCATGGTAGTTCGCACTGAGGTCAACCTGCGCCAGCGAACCATCATGGCTGTAGTAGCCATCAACGCTGGTGTGTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTA  >  NC_000913/2452939‑2453226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.