| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1474033 = | 38 (1.030) | 5 (0.150) | 5/240 | 3.8 | 11.5% | intergenic (+20/‑188) | ydbA/ydbC | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase |
| ? | NC_000913 | 1474063 = | 42 (1.230) | intergenic (+50/‑158) | ydbA/ydbC | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCT > NC_000913/1473892‑1474177 | tGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTaaa < 6:21149/144‑1 (MQ=255)tGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTaaa > 5:21149/1‑144 (MQ=255) agTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGa > 2:55470/1‑149 (MQ=255) cTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTgg > 2:139917/1‑148 (MQ=255) aaCTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGCTCCCTAAACCGCAACGCTGAGACAGGTTGCGGTTTTGTTATTGCCGGATGTGGTACGTGACGCgttttgtgt > 7:114876/1‑147 (MQ=255) tGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTtttgttttgt > 1:87038/1‑149 (MQ=255) gAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTgtgt > 2:51173/1‑149 (MQ=255) aaGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGc > 4:70571/1‑114 (MQ=255) aaGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGc < 3:70571/114‑1 (MQ=255) agagGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCt > 8:68814/1‑87 (MQ=255) agagGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCgtt < 3:22329/135‑1 (MQ=255) agagGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCgtt > 4:22329/1‑135 (MQ=255) gagGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCttt < 1:139917/149‑1 (MQ=255) ggATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCttt > 3:42322/1‑147 (MQ=255) ggATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCa < 1:152191/149‑1 (MQ=255) tCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGtttttt < 5:53181/96‑1 (MQ=255) tCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGtttttt > 6:53181/1‑96 (MQ=255) aTAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGtttt < 2:98468/88‑1 (MQ=255) aTAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGtttt > 1:98468/1‑88 (MQ=255) aTAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCaa < 1:55470/149‑1 (MQ=255) gCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATc < 4:42322/149‑1 (MQ=255) cTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGt < 2:87038/148‑1 (MQ=255) cAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTac > 3:153371/1‑149 (MQ=255) aGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATc > 6:51876/1‑131 (MQ=255) aGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATc < 5:51876/131‑1 (MQ=255) gAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTACTCTTGTTTACAcc > 8:147491/1‑149 (MQ=255) gTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCa < 4:153371/149‑1 (MQ=255) ttCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCgttttgtt < 2:108010/91‑1 (MQ=255) ttCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCgttttgtt > 1:108010/1‑91 (MQ=255) tttttAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCgttttgtttt < 4:46326/87‑1 (MQ=255) tttttAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCgttttgtttt > 3:46326/1‑87 (MQ=255) gCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCtt > 2:41641/1‑132 (MQ=255) aTCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCttt < 2:166604/82‑1 (MQ=255) aTCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGAGGTGGTACGGGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTACTCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGttt < 8:114876/149‑1 (MQ=255) cccTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTc > 4:4414/1‑148 (MQ=255) ccTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCttt > 6:14210/1‑79 (MQ=255) ccTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCttt < 5:14210/79‑1 (MQ=255) ccTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCt < 1:51173/148‑1 (MQ=255) | TGACAAGCGTCGGCGTGAAGTACAGCAGCAAAGAAAGTTCGCTGAATCTGGATGCGTACAACTGGAAAGAGGATGGCATCAGCGATAAAGGCGTGATGCTGAACTTCAAGAAAACGTTCTAATTTTTAGCATGTGATCCCTAAACCGCAACGCTGATACAGGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCT > NC_000913/1473892‑1474177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |