mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,992,052 | 0 | T | A | 68.9% | 160.2 / 110.1 | 132 | D300E (GAT→GAA) | cyaA | adenylate cyclase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.8% | 64.0 / 64.6 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 37 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 60 (0.620) | 29 (0.340) | 24/252 | 3.4 | 31.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 73 (0.850) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 52 (0.540) | 22 (0.260) | 17/252 | 4.9 | 27.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 72 (0.840) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4488423 | 112 (1.160) | 10 (0.110) | 9/260 | 7.5 | 9.4% | intergenic (+23/+138) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| ? | NC_000913 | = 4488427 | 90 (1.020) | intergenic (+27/+134) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold | |||||
| * | ? | NC_000913 | 361678 = | 108 (1.120) | 9 (0.100) | 8/276 | 8.3 | 7.8% | coding (183/612 nt) | lacA | thiogalactoside acetyltransferase |
| ? | NC_000913 | 361700 = | 108 (1.150) | coding (161/612 nt) | lacA | thiogalactoside acetyltransferase | |||||
| * | ? | NC_000913 | = 4168341 | 64 (0.660) | 9 (0.100) | 7/264 | 8.5 | 14.1% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 50 (0.560) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 3802387 = | 167 (1.720) | 5 (0.060) | 5/232 | 8.7 | 3.5% | coding (672/1020 nt) | waaO | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase |
| ? | NC_000913 | 3802413 = | 141 (1.780) | coding (646/1020 nt) | waaO | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase | |||||
| * | ? | NC_000913 | 3201050 = | 124 (1.280) | 9 (0.090) | 7/280 | 8.8 | 6.8% | intergenic (‑85/‑157) | ygiF/ygiM | inorganic triphosphatase/SH3 domain protein |
| ? | NC_000913 | 3201082 = | 124 (1.300) | intergenic (‑117/‑125) | ygiF/ygiM | inorganic triphosphatase/SH3 domain protein | |||||
| * | ? | NC_000913 | 303617 = | 214 (2.210) | 6 (0.070) | 6/258 | 8.8 | 3.0% | intergenic (+12/+236) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913 | 303650 = | 193 (2.190) | intergenic (+45/+203) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913 | = 3185980 | 150 (1.550) | 7 (0.080) | 6/268 | 9.1 | 4.6% | intergenic (+15/‑81) | ygiL/yqiG | putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | NC_000913 | = 3185984 | 148 (1.620) | intergenic (+19/‑77) | ygiL/yqiG | putative fimbrial‑like adhesin protein/pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein | |||||
| * | ? | NC_000913 | 3717215 = | 108 (1.120) | 5 (0.060) | 5/260 | 9.4 | 4.6% | intergenic (+9/‑95) | yiaD/ghrB | multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B |
| ? | NC_000913 | 3717245 = | 107 (1.210) | intergenic (+39/‑65) | yiaD/ghrB | multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B | |||||