mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 756,423 | 0 | C | T | 51.5% | ‑1.2 / 93.4 | 66 | Q173* (CAG→TAG) | sdhA | succinate dehydrogenase, flavoprotein subunit |
| * | NC_000913 | 756,054 | 0 | C | T | 43.1% | 32.4 / 85.1 | 73 | Q50* (CAA→TAA) | sdhA | succinate dehydrogenase, flavoprotein subunit |
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.3% | 114.0 / 82.6 | 96 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4171803 | 84 (1.040) | 10 (0.130) | 6/276 | 9.3 | 10.2% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | 94 (1.180) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 3946824 | 24 (0.300) | 6 (0.080) | 6/276 | 9.3 | 10.0% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4171801 | 84 (1.050) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 6 (0.080) | 6/276 | 9.3 | 6.8% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171803 | 84 (1.040) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 4542682 = | 124 (1.530) | 5 (0.070) | 5/262 | 9.5 | 4.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 112 (1.480) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4263211 = | 102 (1.260) | 5 (0.070) | 5/264 | 9.6 | 5.0% | intergenic (+129/+37) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent |
| ? | NC_000913 | 4263250 = | 92 (1.200) | coding (982/984 nt) | qorA | quinone oxidoreductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | = 2939095 | 101 (1.250) | 5 (0.070) | 5/264 | 9.6 | 5.0% | coding (208/423 nt) | fucU | L‑fucose mutarotase |
| ? | NC_000913 | = 2939106 | 95 (1.240) | coding (219/423 nt) | fucU | L‑fucose mutarotase | |||||
| * | ? | NC_000913 | = 864674 | 86 (1.060) | 6 (0.080) | 5/264 | 9.6 | 6.7% | coding (456/750 nt) | moeB | molybdopterin synthase sulfurylase |
| ? | NC_000913 | = 864694 | 85 (1.110) | coding (436/750 nt) | moeB | molybdopterin synthase sulfurylase | |||||
| * | ? | NC_000913 | = 4559488 | 96 (1.180) | 5 (0.060) | 5/278 | 9.9 | 4.9% | coding (39/1173 nt) | iadA | isoaspartyl dipeptidase |
| ? | NC_000913 | = 4559512 | 98 (1.220) | coding (15/1173 nt) | iadA | isoaspartyl dipeptidase | |||||
| * | ? | NC_000913 | = 3129262 | 79 (0.980) | 4 (0.050) | 4/264 | 10.2 | 5.4% | pseudogene (882/1101 nt) | yghO | pseudogene, IS‑interrupted |
| ? | NC_000913 | = 3129279 | 67 (0.880) | pseudogene (865/1101 nt) | yghO | pseudogene, IS‑interrupted | |||||
| * | ? | NC_000913 | = 4171761 | 96 (1.180) | 9 (0.110) +TAG |
4/274 | 10.4 | 8.5% | intergenic (+5/‑296) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213198 | 101 (1.250) | intergenic (+39/‑36) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||