mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.7% | 49.8 / 32.1 | 41 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 40 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 9898 = | 29 (0.700) | 7 (0.180) | 7/252 | 3.9 | 20.6% | intergenic (+5/+30) | mog/satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| ? | NC_000913 | 9918 = | 27 (0.700) | intergenic (+25/+10) | mog/satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter | |||||
| * | ? | NC_000913 | = 4168341 | 19 (0.460) | 6 (0.160) | 6/250 | 4.3 | 29.6% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 11 (0.290) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 22 (0.530) | 6 (0.160) | 6/250 | 4.3 | 24.3% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168331 | 17 (0.440) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 4363384 = | 42 (1.010) | 5 (0.130) | 5/254 | 4.7 | 10.4% | coding (1659/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC |
| ? | NC_000913 | 4363422 = | 47 (1.200) | coding (1621/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC | |||||
| * | ? | NC_000913 | 752056 = | 56 (1.350) | 5 (0.130) | 5/252 | 4.7 | 8.9% | coding (114/2448 nt) | ybgQ | putative outer membrane protein |
| ? | NC_000913 | 752078 = | 50 (1.290) | coding (92/2448 nt) | ybgQ | putative outer membrane protein | |||||
| * | ? | NC_000913 | 1057495 = | 29 (0.700) | 5 (0.130) | 5/258 | 4.8 | 15.0% | coding (460/693 nt) | torR | response regulator in two‑component regulatory system with TorS |
| ? | NC_000913 | 1057520 = | 29 (0.730) | coding (435/693 nt) | torR | response regulator in two‑component regulatory system with TorS | |||||
| * | ? | NC_000913 | 745664 = | 27 (0.650) | 5 (0.130) | 5/260 | 4.8 | 14.7% | coding (500/735 nt) | ybgL | UPF0271 family protein |
| ? | NC_000913 | 745697 = | 32 (0.800) | coding (533/735 nt) | ybgL | UPF0271 family protein | |||||
| * | ? | NC_000913 | = 580809 | 41 (0.990) | 4 (0.110) | 4/238 | 4.9 | 10.4% | intergenic (‑364/‑25) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 1636449 = | 33 (0.900) | intergenic (‑82/‑307) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage | |||||
| * | ? | NC_000913 | = 2819845 | 49 (1.180) | 4 (0.100) | 4/250 | 5.1 | 9.8% | coding (2167/2631 nt) | alaS | alanyl‑tRNA synthetase |
| ? | NC_000913 | = 2819896 | 28 (0.730) | coding (2116/2631 nt) | alaS | alanyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | 2729475 = | 23 (0.550) | 5 (0.130) | 4/250 | 5.1 | 23.6% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 11 (0.290) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||