| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4008241 | 181 (2.300) | 3 (0.040) | 3/240 | NT | 1.7% | coding (485/621 nt) | rhtC | threonine efflux pump |
| ? | NC_000913 | = 4008257 | 183 (2.440) | coding (501/621 nt) | rhtC | threonine efflux pump | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008091‑4008241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAA < NC_000913/4008257‑4008110 GGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTG < 1:129990/149‑1GGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTG < 1:186074/149‑1GGCGCAGTTTACTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCGGGGGCATTTTTGCGCTGATCATTGTCGAAACGCT < 3:79010/148‑1 GCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTTATCATTGTCGAAACGCTGGC > 1:220646/1‑148 GCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGC > 8:386049/1‑148 GCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGC < 7:386049/148‑1 ACCAATCTCGCTACTCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCGCATTGTTTGTCCGTGATAACGTTGCCACTACCGCGCGCTGGGGCATTTTTGCGCTGAGCATTGTCGAAACGCTGGC > 1:324167/1‑125 ACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTGCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCGGGC < 2:324167/125‑1 GCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAA < 2:220646/148‑1 ACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCAACGACGGTAAACCACGCCAGCGTT > 1:220520/1‑119 ACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGCAACGACGGTAAACCACGCCAGCGTT < 2:220520/119‑1 GCTGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCA < 4:22662/149‑1 CTGGGAACGACGGTAAACGACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCA < 6:107010/148‑1 TGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTT > 5:354155/1‑127 TGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTT < 6:354155/127‑1 TGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAA > 7:86243/1‑112 TGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAA < 8:86243/112‑1 TGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAAT > 5:213825/1‑95 TGGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAAT < 6:213825/95‑1 GGCAACGACGGTAATCCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGA < 2:126054/137‑1 GGCAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGA > 1:126054/1‑137 GCAACGACGGTAAACCACACCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGC > 1:190702/1‑122 GCAACGACGGTAAACCACACCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGC < 2:190702/122‑1 CAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAA < 6:59825/149‑1 GGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTTGCGCTGATCATTGTCGAAACGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008091‑4008241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcAACGACGGTAAACCACGCCAGCGTTTCGACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAA < NC_000913/4008257‑4008110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |