| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,625,589 | Δ95,041 bp | yhhJ–[mokA] | 82 genes yhhJ, rbbA, yhiI, yhiJ, yhiL, yhiL, yhiM, yhiN, pitA, uspB, uspA, dtpB, rsmJ, prlC, rlmJ, gor, dinQ, agrA, agrB, arsR, arsB, arsC, yhiS, insH1, yhiS, slp, dctR, yhiD, hdeB, hdeA, hdeD, arrS, gadE, mdtE, mdtF, gadW, gadY, gadX, gadA, yhjA, treF, yhjB, yhjC, yhjD, yhjE, yhjG, yhjH, kdgK, yhjJ, dctA, yhjK, bcsC, bcsZ, bcsB, bcsA, bcsQ, yhjR, bcsE, bcsF, bcsG, ldrD, rdlD, yhjV, dppF, dppD, dppC, dppB, dppA, proK, eptB, yhjX, yhjY, tag, yiaC, bisC, yiaD, ghrB, yiaF, yiaG, cspA, hokA, [mokA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3625589 | 3720629 | 95041 | 28 [0] | [0] 29 | yhhJ–[mokA] | yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH1,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,mdtE,mdtF,gadW,gadY,gadX,gadA,yhjA,treF,yhjB,yhjC,yhjD,yhjE,yhjG,yhjH,kdgK,yhjJ,dctA,yhjK,bcsC,bcsZ,bcsB,bcsA,bcsQ,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB,yiaF,yiaG,cspA,hokA,[mokA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3625588 | 0 (0.000) | 27 (0.880) | 24/282 | 0.3 | 100% | intergenic (+74/+91) | yhhI/yhhJ | putative transposase/putative ABC transporter permease |
| ? | NC_000913 | 3720630 = | NA (NA) | pseudogene (3/185 nt) | mokA | pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS | |||||
AGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > NC_000913/3625470‑3625735 | aGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgat > 2:138852‑M1/1‑119 (MQ=255) aaCTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatga > 5:56877‑M1/1‑116 (MQ=255) aaCTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatga > 1:107106‑M1/1‑116 (MQ=255) gCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaat < 2:120932‑M1/147‑41 (MQ=255) cGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagc < 2:63932‑M1/149‑44 (MQ=255) aGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagc < 2:13790‑M1/149‑61 (MQ=255) gggCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaa < 2:122813‑M1/149‑64 (MQ=255) cccTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaag > 8:44135‑M1/1‑69 (MQ=255) cccTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagaccctaatatgtcaacgccaaaatacccttttgaaaag > 7:49820‑M1/1‑69 (MQ=255) gAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatgtcatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc > 8:57894‑M1/1‑65 (MQ=255) cAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaa < 6:56877‑M1/149‑90 (MQ=255) aGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaa < 8:49820‑M1/149‑98 (MQ=255) tATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatc < 2:107106‑M1/149‑100 (MQ=255) tATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaat > 5:21404‑M1/1‑50 (MQ=255) aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagc > 2:78217‑M1/1‑49 (MQ=255) aTCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagc < 1:78217‑M1/130‑82 (MQ=255) tCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcac > 7:105079‑M1/1‑48 (MQ=255) tCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttggaaaagcgccttgaagtcgtgaatcac > 5:124505‑M1/1‑48 (MQ=255) aaaGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactact > 3:111926‑M1/1‑44 (MQ=255) gAAACTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgat > 3:53190‑M1/1‑30 (MQ=255) cTGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggtt < 7:44135‑M1/149‑124 (MQ=255) tGTCCAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggtta > 2:88175‑M1/1‑25 (MQ=255) cAGGTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacag > 7:83662‑M1/1‑21 (MQ=255) ggTTTTGGGGGTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggat > 5:121160‑M1/1‑19 (MQ=255) gTCAGTTCAgtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggca > 5:10901‑M1/1‑9 (MQ=255) tcagttcagtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcac > 6:108770‑M1/1‑8 (MQ=255) gttcagtatgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt > 1:117936‑M1/1‑5 (MQ=255) agtatgtactgcacccattttgttggacgatgaaagggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatgggtacaggatcatctcggcacgttttg < 6:124505‑M1/148‑148 (MQ=255) | AGAAACTATCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAATCTTGCCCTGAATACAGGACTGAGTATCAAAAAGCCGGTTAACTGAAACTGTCCAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > NC_000913/3625470‑3625735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |