| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1237689 = | 73 (0.780) | 4 (0.040) | 4/256 | NT | 5.5% | coding (119/1299 nt) | dadA | D‑amino acid dehydrogenase |
| ? | NC_000913 | 1237731 = | 67 (0.740) | coding (161/1299 nt) | dadA | D‑amino acid dehydrogenase | |||||
CCACATCCATTTCAACTGGAACTGCGTACCGTCGAGACGAACCGCCAGCGGCGCATGGCGCTGGAACATCCATTTAATCGCTTTTAAAGGCACACCTGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1237840‑1237689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacCG‑‑‑T‑‑‑GGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGG > NC_000913/1237731‑1237877 CCACATCCATTTCAACTGGAACTGCGTACCGTCGAGACGAACCGCCAGCGGCGCATGGCGCTGGAACATCCATTTAATCGCTTTTAAAGGCACACCTGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGG < 2:337846/149‑1CCACATCCATTTCAACTGGAACTGCGTACCGTCGAGACGAACCGCCAGCGGCGCATGGCGCTGGAACATCCATTTAATCGCTTTTAAAGGCACACCTGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGG < 3:226554/149‑1CCACATCCATTTCAACTGGAACTGCGTACCGTCGAGACGAACCGCCAGCGGCGCATGGCGCTGGAACATCCATTTAATCGCTTTTAAAGGCACACCTGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGG < 8:309579/149‑1 ACATCCATTTCAACTGGAACTGCGTACCGTCGAGACGAACCGCCAGCGGCGCATGGCGCTGGAACATCCATTTAATCGCTTTTAAAGGCACCCCTGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATGTGCCCGGCATTCGCGGCA > 1:341658/1‑149 CTGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGGCACTGGTTTCCAGGGCGGCACCAGGTGTGCCTTTAAAAGCGTTTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACG > 7:337810/1‑149 TGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGATGAAATTGA > 1:163767/1‑149 ACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGGCACCG‑‑‑T‑‑‑GGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAG > 7:411853/1‑140 ACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGGCACCG‑‑‑T‑‑‑GGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAG < 8:411853/140‑1 CACCG‑‑‑T‑‑‑GGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATG < 2:287570/149‑1 ACCG‑‑‑T‑‑‑GGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAACGTTACGTAACTGCGACACCAGCCACTACATGG < 8:80670/149‑1 CCACATCCATTTCAACTGGAACTGCGTACCGTCGAGACGAACCGCCAGCGGCGCATGGCGCTGGAACATCCATTTAATCGCTTTTAAAGGCACACCTGGTGCCGCCCACGGTGCAGCATATCCGGGGGAGATTTGCCCGGCATTCGCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1237840‑1237689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacCG‑‑‑T‑‑‑GGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGG > NC_000913/1237731‑1237877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |