New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4636324 =	23 (0.720)	7 (0.230)	6/244	2.6	23.8%	coding (318/690 nt)	creB	response regulator in two‑component regulatory system with CreC
	?	NC_000913	4636375 =	23 (0.760)					coding (369/690 nt)	creB	response regulator in two‑component regulatory system with CreC

CCGGATATTAGCGGCTTTGAATTGTGCCGCCAGTTACTGGCGCTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGC  >  NC_000913/4636178‑4636467                                                                                                                                                   |                                                                                                                                                   ccGGATATTAGCGGCTTTGAATTGTGCCGCCAGTTACTGGCGCTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTc                                                                                                                                                  >  2:93613/1‑149 (MQ=255)           gCGGCTTTGAATTGTGCCGCCAGTTACTGGCGCTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGaa                                                                                                                                        <  5:94941/149‑1 (MQ=255)                   gAATTGTGCCGCCAGTTACTGGCGCTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTgcgc                                                                                                                             >  3:52088/1‑149 (MQ=255)                        ttcaacaataaaaactcataccgagtcagcgctaatggcgtgtcaaaccagctgatctgcgccgcgggttcattcaattcaaaatgtccaatacggatgacgggagacggcgtcgagaacttcTTCACCCCGCGAAGT‑‑‑GTGCGCCAggg                                                                                                                        <  1:28636‑M1/26‑1 (MQ=255)                           ccgccAGTTACTGGCGCTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGt‑‑‑gtg                                                                                                                                <  4:60435/138‑1 (MQ=255)                           ccgccAGTTACTGGCGCTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGt‑‑‑gtg                                                                                                                                >  3:60435/1‑138 (MQ=255)                                        gcgcTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCg                                                                                                        >  2:59859/1‑149 (MQ=255)                                              cATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCgg                                                                                                    <  1:93613/147‑1 (MQ=255)                                              cATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCgg                                                                                                    <  4:52088/147‑1 (MQ=255)                                                   agcgctaatggcgtgtcaaaccagctgatctgcgccgcgggttcattcaattcaaaatgtccaatacggatgacgggagacggcgtcgagaacttcTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTgaag                                                                                              >  2:28636‑M1/97‑148 (MQ=255)                                                    gcgctaatggcgtgtcaaaccagctgatctgcgccgcgggttcattcaattcaaaatgtccaatacggatgacgggagacggcgtcgagaacttcTTCACCCGACGCAGTAAGGTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTgaa                                                                                               >  5:19720‑M1/96‑149 (MQ=255)                                                                   ttCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGt                                                                                          <  1:5202/136‑1 (MQ=255)                                                                   ttCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGt                                                                                          >  2:5202/1‑136 (MQ=255)                                                                     aaccagctgatctgcgccgcgggttcattcaattcaaaatgtccaatacggatgacgggagacggcgtcgagaacttcTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTgaaga                                                                                             <  4:135940‑M1/53‑1 (MQ=255)                                                                     aaccagctgatctgcgccgcgggttcattcaattcaaaatgtccaatacggatgacgggagacggcgtcgagaacttcTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTgaaga                                                                                             >  3:135940‑M1/79‑131 (MQ=255)                                                                     aaccagctgatctgcgccgcgggttcattcaattcaaaatgtccaatacggatgacgggagacggcgtcgagaacttcTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTtc                                                                                        >  1:1147‑M1/79‑136 (MQ=255)                                                                     aaccagctgatctgcgccgcgggttcattcaattcaaaatgtccaatacggatgacgggagacggcgtcgagaacttcTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTtc                                                                                        <  2:1147‑M1/58‑1 (MQ=255)                                                                      cttcaggCCCGTAGTCTATAGGTCGATGTCCTGCTTGGGGTGTAAATTTGTGATGACGTCTATGGTGATAAACCTTTTTCACCACTCGAAGT‑‑‑GTGCGCCTGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGtctc                                                                           <  8:61318/143‑1 (MQ=255)                                                                      cTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCgg                                                                                                    <  5:25295/123‑1 (MQ=255)                                                                      cTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCgg                                                                                                    >  6:25295/1‑123 (MQ=255)                                                                                              gATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCa                                                                     <  1:67402/130‑1 (MQ=255)                                                                                              gATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttg                                                   >  5:152723/1‑148 (MQ=255)                                                                                              gATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTAGACGCCGTCTCCCGTCa                                                                     >  2:67402/1‑130 (MQ=255)                                                                                                  gCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttgaatt                                               <  6:152723/148‑1 (MQ=255)                                                                                                    cTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTttgaattgaa                                            <  1:59859/149‑1 (MQ=255)                                                                                                              tGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCcgcg                                  >  8:14157/1‑149 (MQ=255)                                                                                                                       gTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGAt                          <  7:14157/148‑1 (MQ=255)                                                                                                                                  tACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGc                      <  5:91568/141‑1 (MQ=255)                                                                                                                                  tACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGc                      >  6:91568/1‑141 (MQ=255)                                                                                                                                              ccGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACTCCATTAgc  >  7:50788/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCGGATATTAGCGGCTTTGAATTGTGCCGCCAGTTACTGGCGCTCCATCCGGCGTTACCTGTACTGTTCCTGACGGCCCGAAGTGAAGAGGTCGATCGCCTGCTTGGGCTGGAAATTGGTGCTGACGACTACGTGGCTAAACCGTTTTCACCCCGCGAAGT‑‑‑GTGCGCCAGGGTGCGCACCTTACTGCGTCGGGTGAAGAAGTTCTCGACGCCGTCTCCCGTCATCCGTATTGGACATTTTGAATTGAATGAACCCGCGGCGCAGATCAGCTGGTTTGACACGCCATTAGC  >  NC_000913/4636178‑4636467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.