New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	756106 =	9 (0.250)	25 (0.720)	21/240	0.7	82.4%	coding (200/1767 nt)	sdhA	succinate dehydrogenase, flavoprotein subunit
	?	NC_000913	756221 =	2 (0.060)					coding (315/1767 nt)	sdhA	succinate dehydrogenase, flavoprotein subunit

GTAATACCCATGAAGATAACTGGGAATGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAAC  >  NC_000913/756079‑756365                                                                                                                                               |                                                                                                                                                 atacgaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCAttcc                                                                                                                                              <  5:58747‑M1/120‑2 (MQ=255)  tacgaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGccattcccag                                                                                                                                           >  6:58747‑M1/27‑145 (MQ=255)     gaccatcatcgagacgcgagaacGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCctgccattcccagtta                                                                                                                                        >  7:109510‑M1/24‑142 (MQ=255)                 taactgggaatggcaggcccatgtgttcgagttccagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTc                                                                                                                            >  7:109510‑M2/127‑149 (MQ=255)                    ctgggaatggcaggcccatgtgttcgagttccagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGta                                                                                                                         >  6:58747‑M2/124‑149 (MQ=255)                       ggaatggcaggcccatgtgttcgagttccagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGtat                                                                                                                        <  5:58747‑M2/27‑1 (MQ=255)                         aatggcaggcccatgtgttcgagttccagaatcgcttccggcccggtttttcacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGtatctat                                                                                                                    >  6:24419‑M2/119‑149 (MQ=255)                             gcaggcccatgtgttcgagttccagaatcgcttccggcccggttttacacagatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAAc                                                                                                                >  4:44827‑M2/115‑149 (MQ=255)                                      tgtgttcgagttccagaatcgcttccggcccggtttttcacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTg                                                                                                       <  5:24419‑M2/44‑1 (MQ=255)                                         gttcgagttccagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGtat                                                                                                                        >  3:123695‑M2/103‑129 (MQ=255)                                          ttcgagttccagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCg                                                                                                    <  5:172887‑M2/47‑1 (MQ=255)                                                ttccagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTc                                                                                             <  8:109510‑M2/54‑1 (MQ=255)                                                   cagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTtct                                                                                                                                              <  8:152572‑M2/5‑1 (MQ=255)                                                   cagaatcgcttccggcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTtct                                                                                                                                              >  7:152572‑M2/93‑97 (MQ=255)                                                              tatCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCg                                                                                                           <  6:167957/121‑1 (MQ=255)                                                              tatCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCg                                                                                                           >  5:167957/1‑121 (MQ=255)                                                                 gcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccg                                                                                                                                                  <  2:178041‑M2/1‑1 (MQ=255)                                                                 gcccggttttacacatatattcaatcgcgtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccg                                                                                                                                                  >  1:178041‑M2/79‑79 (MQ=255)                                                                                             gtcctggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCagcagc                                                >  5:159154‑M2/51‑149 (MQ=255)                                                                                                 tggtcaccgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGAc                                            >  5:79123‑M2/47‑149 (MQ=255)                                                                                                        cgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTcgg                                                                                 <  2:84043‑M2/66‑1 (MQ=255)                                                                                                        cgatatagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTcgg                                                                                 >  1:84043‑M2/40‑105 (MQ=255)                                                                                                             tagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCa                                 <  3:44827‑M2/114‑1 (MQ=255)                                                                                                             tagtccgaccctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCAc                                <  6:79123‑M2/115‑1 (MQ=255)                                                                                                                      cctttcacggtgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTg                       <  6:159154‑M2/124‑1 (MQ=255)                                                                                                                                tgtcgtacatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCtt              >  1:154004‑M2/16‑148 (MQ=255)                                                                                                                                      acatatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCg                                     >  6:31656‑M2/10‑119 (MQ=255)                                                                                                                                      acatatgccGTTCTCGCGTCTCGATGATGGTAGTATCTATCACAGTCAGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCTGCACGCACTTCGTCAGCAGCTGACCCTACCGGGCACTCACTGTTGCACACGCTTTATcag        >  8:28586‑M2/10‑148 (MQ=255)                                                                                                                                        atatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGa                                             >  6:123257‑M2/8‑109 (MQ=255)                                                                                                                                        atatgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGa                                             <  5:123257‑M2/102‑1 (MQ=255)                                                                                                                                           tgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGa                                             >  6:13677‑M2/5‑106 (MQ=255)                                                                                                                                           tgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGa                                             <  5:13677‑M2/102‑1 (MQ=255)                                                                                                                                           tgccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAAc  >  3:72182‑M2/5‑149 (MQ=255)                                                                                                                                            gccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATca         >  7:13110‑M2/4‑141 (MQ=255)                                                                                                                                            gccGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATca         <  8:13110‑M2/138‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 GTAATACCCATGAAGATAACTGGGAATGGCATATGTACGACACCGTGAAAGGGTCGGACTATATCGGTGACCAGGACGCGATTGAATATATGTGTAAAACCGGGCCGGAAGCGATTCTGGAACTCGAACACATGGGCCTGCCGTTCTCGCGTCTCGATGATGGTCGTATCTATCAACGTCCGTTTGGCGGTCAGTCGAAAAACTTCGGCGGCGAGCAGGCGGCACGCACTGCGGCAGCAGCTGACCGTACCGGTCACGCACTGTTGCACACGCTTTATCAGCAGAAC  >  NC_000913/756079‑756365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.