New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3920240 =	34 (0.950)	4 (0.120)	4/232	3.3	11.0%	coding (164/534 nt)	atpH	F1 sector of membrane‑bound ATP synthase, delta subunit
	?	NC_000913	3920260 =	33 (0.990)					coding (144/534 nt)	atpH	F1 sector of membrane‑bound ATP synthase, delta subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTAC  >  NC_000913/3920093‑3920385                                                                                                                                                    |                                                                                                                                                  tcactcacGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTc                                                                                                                                                  >  5:156735/1‑149 (MQ=255)                      aTAAACTGCTCCAGAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCagagag                                                                                                                             <  6:156735/149‑1 (MQ=255)                               ctcAGAACATCCGGGAGCGCGTTACGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGc                                                                                                                    <  7:82338/147‑1 (MQ=255)                                  aGAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGc                                                                                                                    >  8:82338/1‑146 (MQ=255)                                   gAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCAtt                                                                                                                >  3:57556/1‑149 (MQ=255)                                       aTCCGGGAGCGCGTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGtt                                                                                                            >  2:170162/1‑149 (MQ=255)                                                   gTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGtttt                                                                                                      >  2:72960/1‑143 (MQ=255)                                                   gTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACAACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGtttt                                                                                                      <  1:72960/143‑1 (MQ=255)                                                                ttttCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCa                                                                                                                                  <  2:176716/102‑1 (MQ=255)                                                                ttttCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCa                                                                                                                                  >  1:176716/1‑102 (MQ=255)                                                                   tCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGc                                                                                >  1:105443/1‑149 (MQ=255)                                                                     aGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCa                                                                              <  2:105443/149‑1 (MQ=255)                                                                                gAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGc                                                                   >  7:86103/1‑149 (MQ=255)                                                                                  aTCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCa                                                                 <  8:86103/149‑1 (MQ=255)                                                                                     aGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCAt                                                                          >  8:87421/1‑137 (MQ=255)                                                                                     aGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCAt                                                                          <  7:87421/137‑1 (MQ=255)                                                                                            gACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCagaaa                                                                                                                              >  2:24677/1‑76 (MQ=255)                                                                                            gACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCagaaa                                                                                                                              <  1:24677/78‑3 (MQ=255)                                                                                              ccGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACt                                                     >  3:88899/1‑149 (MQ=255)                                                                                               cGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACtt                                                    >  3:76866/1‑149 (MQ=255)                                                                                                 ttttCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTg                                                  <  1:170162/149‑1 (MQ=255)                                                                                                 ttttCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTg                                                  <  4:76866/149‑1 (MQ=255)                                                                                                                  accacAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACgg                                       >  4:27471/1‑143 (MQ=255)                                                                                                                  accacAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACgg                                       <  3:27471/143‑1 (MQ=255)                                                                                                                  accacAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAg                                  <  4:57556/148‑1 (MQ=255)                                                                                                                    cacaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCt                                                          <  7:107121/122‑1 (MQ=255)                                                                                                                    cacaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCt                                                          >  8:107121/1‑122 (MQ=255)                                                                                                                    cacaAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTc                                >  5:2109/1‑148 (MQ=255)                                                                                                                              gATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGGGGCAAACGCCAGc                                                                            <  6:110472/94‑1 (MQ=255)                                                                                                                              gATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGGGGCAAACGCCAGc                                                                            >  5:110472/1‑94 (MQ=255)                                                                                                                                   aCGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTa                                                         >  6:72895/1‑108 (MQ=255)                                                                                                                                        tCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAggg           >  2:108326/1‑149 (MQ=255)                                                                                                                                           gCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGTCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGc         >  6:89595/1‑148 (MQ=255)                                                                                                                                                 gTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTAc  >  5:131746/1‑149 (MQ=255)                                                                                                                                                    tCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTa              <  7:48116/134‑1 (MQ=255)                                                                                                                                                    tCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTa              >  8:48116/1‑134 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCATAACCCGAATCAGGTTCTGACCGTTTTCGTCCAGTTGCTCACCACAAACTGCGATAAACGACTCGGCGAGCGTTTCTGGCGCAAGCGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTAC  >  NC_000913/3920093‑3920385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.