New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2805380	20 (0.560)	6 (0.180)	5/230	3.0	22.4%	coding (566/1203 nt)	proV	glycine betaine/proline ABC transporter periplasmic binding protein
	?	NC_000913	= 2805401	23 (0.700)					coding (587/1203 nt)	proV	glycine betaine/proline ABC transporter periplasmic binding protein

AACGCCGGGAAAAAGCCCTTGATGCACTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAATTGCCAT  >  NC_000913/2805233‑2805524                                                                                                                                                    |                                                                                                                                                 aaCGCCGGGAAAAAGCCCTTGATGCACTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGAc                                                                                                                                                 <  2:70393/149‑1 (MQ=255)    gCCGGGAAAAAGCCCTTGATGCACTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGAtc                                                                                                                                                >  1:17268‑M1/1‑145 (MQ=255)                          aCTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGAtcgagcgccgagaaggcttcgtccat                                                                                                                        >  7:104869‑M1/1‑123 (MQ=255)                          aCTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtccat                                                                                                                        <  6:58012‑M2/149‑6 (MQ=255)                                   ggTCGGGCTGGAAAATTATGCCCACAGCTATCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTtc                                                                                                                                        >  4:102808/1‑124 (MQ=255)                                   ggTCGGGCTGGAAAATTATGCCCACAGCTATCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTtc                                                                                                                                        <  3:102808/124‑1 (MQ=255)                                       gggCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGAtcgagcgccgagaaggcttcgtccattaataatatatc                                                                                                            <  8:104869‑M1/148‑39 (MQ=255)                                       gggCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGAtcgagcgccgagaaggcttcgtccattaataatatatc                                                                                                            <  2:17268‑M1/148‑39 (MQ=255)                                            ggAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGc                                                                                                      <  5:58012/149‑1 (MQ=255)                                             gAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGAtcgagcgccgagaaggcttcgtccattaat                                                                                                                    <  6:36477‑M1/134‑31 (MQ=255)                                             gAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGAtcgagcgccgagaaggcttcgtccattaat                                                                                                                    >  5:36477‑M1/1‑104 (MQ=255)                                                        ccACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTgg                                                                                          >  3:101434/1‑149 (MQ=255)                                                                            tctctGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACa                                                                                >  1:65252/1‑139 (MQ=255)                                                                            tctctGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACa                                                                                <  2:65252/139‑1 (MQ=255)                                                                                 ggCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAgcg                                                                 >  8:75274/1‑149 (MQ=255)                                                                                                cGTGTGGGATTACCCCGCGCGGTAGCGATTAAACCGGATATATTATTAATGGCCCAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATAGTCTTTAt                                                  <  4:101434/149‑1 (MQ=255)                                                                                                         ttAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGc                                                                             >  1:133028/1‑113 (MQ=255)                                                                                                         ttAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGc                                                                             <  2:133028/113‑1 (MQ=255)                                                                                                              ccGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtc                                                                                                                           >  2:135589‑M2/1‑60 (MQ=255)                                                                                                              ccGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCtt                                     >  6:20079/1‑148 (MQ=255)                                                                                                              ccGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCATTCTCGGCGCTCGATACATTAATTCGCACCGAGATTCAGGATGAGCTGGTAAAATTACATGCGAAACATCAGCGAACCATTGTCTTTATTTCCCACTATCtt                                     >  8:132295/1‑148 (MQ=255)                                                                                                                        gCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCAt                          <  5:20079/149‑1 (MQ=255)                                                                                                                           aTTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCg                       >  1:91843/1‑149 (MQ=255)                                                                                                                                tCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTg                  >  4:83112/1‑149 (MQ=255)                                                                                                                                tCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTg                  >  1:24554/1‑149 (MQ=255)                                                                                                                                    gATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagccc               <  2:17268‑M2/148‑111 (MQ=255)                                                                                                                                    gATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagccc               <  8:104869‑M2/148‑111 (MQ=255)                                                                                                                                         attattAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGAt                                                                                                 >  8:152569/1‑61 (MQ=255)                                                                                                                                         attattAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGAt                                                                                                 <  7:152569/61‑1 (MQ=255)                                                                                                                                          ttattaATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAAt        <  2:24554/149‑1 (MQ=255)                                                                                                                                            attaATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttc                     <  6:36477‑M2/134‑105 (MQ=255)                                                                                                                                            attaATGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttc                     >  5:36477‑M2/1‑30 (MQ=255)                                                                                                                                                aTGGAtcgagcgccgagaaggcttcgtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagcccgacctgacgcagt  <  6:58012‑M1/149‑145 (MQ=255)                                                                                                                                                aTGGACGAAGCCTTCTCGGCGCTCGAtccattaataatatatccggattaatcgctaacgcgcgggctaatcccacacgttgacgcatcccgccagagagttcatccgggtagctgtgggcataattttccagcccgacctgacgcagt  >  7:104869‑M2/1‑26 (MQ=255)                                                                                                                                                   gAtcgagcgccgagaaggcttcgtccattaataatatatccggattaatcgctaacgcgcgg                                                                                      >  2:135589‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                 AACGCCGGGAAAAAGCCCTTGATGCACTGCGTCAGGTCGGGCTGGAAAATTATGCCCACAGCTACCCGGATGAACTCTCTGGCGGGATGCGTCAACGTGTGGGATTAGCCCGCGCGTTAGCGATTAATCCGGATATATTATTAATGGACGAAGCCTTCTCGGCGCTCGATCCATTAATTCGCACCGAGATGCAGGATGAGCTGGTAAAATTACAGGCGAAACATCAGCGCACCATTGTCTTTATTTCCCACGATCTTGATGAAGCCATGCGTATTGGCGACCGAATTGCCAT  >  NC_000913/2805233‑2805524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.