mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,307,298 | 0 | G | A | 35.0% | 15.8 / 14.9 | 20 | P168S (CCC→TCC) | alsK | D‑allose kinase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.5% | 66.2 / 49.5 | 55 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,307,290 | 0 | T | C | 33.3% | 19.4 / 14.6 | 21 | G170G (GGA→GGG) | alsK | D‑allose kinase |
| * | NC_000913 | 4,307,294 | 0 | A | T | 33.3% | 22.2 / 13.1 | 21 | L169Q (CTG→CAG) | alsK | D‑allose kinase |
| * | NC_000913 | 1,865,682 | 0 | G | C | 29.6% | 38.3 / 21.5 | 28 | intergenic (‑46/+44) | yeaE/mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| * | NC_000913 | 2,750,078 | 0 | T | G | 20.7% | 65.6 / 10.8 | 29 | intergenic (+18/+37) | yfjD/grpE | UPF0053 family inner membrane protein/heat shock protein |
| * | NC_000913 | 1,868,859 | 0 | C | . | 20.6% | 92.8 / 21.7 | 34 | intergenic (+17/‑96) | yeaG/yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| * | NC_000913 | 2,750,073 | 0 | G | T | 20.0% | 67.8 / 11.5 | 30 | intergenic (+13/+42) | yfjD/grpE | UPF0053 family inner membrane protein/heat shock protein |
| Marginal new junction evidence (lowest skew 10 of 51 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2643100 | 39 (1.070) | 9 (0.280) | 9/230 | 2.3 | 18.8% | intergenic (‑256/+29) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 2643110 | 43 (1.320) | intergenic (‑266/+19) | rodZ/rlmN | MreB assembly cytoskeletal protein/dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4171896 | 35 (0.960) | 6 (0.180) | 6/242 | 3.3 | 15.6% | intergenic (+140/‑161) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4171901 | 32 (0.930) | intergenic (+145/‑156) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 4040789 | 19 (0.520) | 6 (0.180) | 6/242 | 3.3 | 19.7% | intergenic (+153/+117) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4171888 | 31 (0.910) | intergenic (+132/‑169) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 4040776 | 19 (0.520) | 6 (0.180) | 6/242 | 3.3 | 19.4% | intergenic (+140/+130) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4171901 | 32 (0.930) | intergenic (+145/‑156) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | = 4040776 | 19 (0.520) | 6 (0.180) | 6/242 | 3.3 | 26.2% | intergenic (+140/+130) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4040781 | 16 (0.470) | intergenic (+145/+125) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3423270 = | 37 (1.010) | 6 (0.180) | 6/242 | 3.3 | 15.4% | intergenic (+76/+153) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171888 | 31 (0.910) | intergenic (+132/‑169) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 3423270 = | 37 (1.010) | 6 (0.180) | 6/242 | 3.3 | 18.3% | intergenic (+76/+153) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040768 | 19 (0.550) | intergenic (+132/+138) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | = 4240739 | 49 (1.340) | 6 (0.160) | 6/258 | 3.5 | 11.1% | intergenic (+4/+40) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913 | = 4240769 | 47 (1.290) | intergenic (+34/+10) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||
| * | ? | NC_000913 | 303617 = | 51 (1.400) | 5 (0.150) | 5/232 | 3.5 | 9.4% | intergenic (+12/+236) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913 | 303650 = | 50 (1.520) | intergenic (+45/+203) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913 | 47266 = | 37 (1.010) | 5 (0.150) | 5/242 | 3.6 | 12.4% | coding (21/531 nt) | kefF | potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent |
| ? | NC_000913 | 47307 = | 36 (1.050) | coding (62/531 nt) | kefF | potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent | |||||