mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,457,895 | 0 | C | T | 21.4% | 54.0 / 10.4 | 28 | G133G (GGC→GGT) | paaF | 2,3‑dehydroadipyl‑CoA hydratase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.4% | 83.5 / 18.1 | 42 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,932,096 | 0 | C | G | 21.2% | 79.9 / 18.7 | 33 | intergenic (+37/+19) | purT/eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| * | NC_000913 | 1,932,094 | 0 | C | G | 20.0% | 89.0 / 18.0 | 35 | intergenic (+35/+21) | purT/eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| * | NC_000913 | 1,932,095 | 0 | T | A | 20.0% | 78.5 / 14.2 | 35 | intergenic (+36/+20) | purT/eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3587430 = | 40 (1.160) | 6 (0.190) | 6/228 | 3.0 | 13.1% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913 | 3587464 = | 43 (1.350) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | NC_000913 | = 3229847 | 39 (1.130) | 6 (0.180) | 6/236 | 3.1 | 14.6% | coding (960/2352 nt) | ygjK | alpha‑glucosidase |
| ? | NC_000913 | = 3229881 | 33 (1.000) | coding (994/2352 nt) | ygjK | alpha‑glucosidase | |||||
| * | ? | NC_000913 | = 1748833 | 37 (1.070) | 6 (0.190) | 6/230 | 3.1 | 15.7% | coding (727/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| ? | NC_000913 | = 1748842 | 30 (0.940) | coding (718/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.160) | 5/230 | 3.4 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 752877 | 59 (1.710) | 4 (0.130) | 4/226 | 3.7 | 7.8% | intergenic (‑82/+308) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| ? | NC_000913 | = 752904 | 41 (1.300) | intergenic (‑109/+281) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase | |||||
| * | ? | NC_000913 | = 3890165 | 46 (1.330) | 4 (0.130) | 4/228 | 3.8 | 9.2% | intergenic (+20/‑71) | tnaA/tnaB | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/tryptophan transporter of low affinity |
| ? | NC_000913 | = 3890174 | 37 (1.160) | intergenic (+29/‑62) | tnaA/tnaB | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/tryptophan transporter of low affinity | |||||
| * | ? | NC_000913 | = 2066832 | 8 (0.230) | 4 (0.120) | 4/230 | 3.8 | 35.0% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2102447 | NA (NA) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2066832 | 8 (0.230) | 4 (0.120) | 4/230 | 3.8 | 48.7% | noncoding (522/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066857 | 1 (0.030) | noncoding (497/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1967784 | 45 (1.300) | 4 (0.120) | 4/234 | 3.8 | 8.3% | coding (718/1050 nt) | cheB | fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA |
| ? | NC_000913 | = 1967815 | 46 (1.410) | coding (687/1050 nt) | cheB | fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA | |||||
| * | ? | NC_000913 | = 1457267 | 32 (0.930) | 4 (0.120) | 4/234 | 3.8 | 11.9% | coding (838/1071 nt) | paaE | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| ? | NC_000913 | = 1457288 | 29 (0.890) | coding (859/1071 nt) | paaE | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component | |||||