| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,559,357 | Δ1,629 bp | [rtcR]–[glpG] | [rtcR], glpR, glpR, [glpG] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3559357 | 3560985 | 1629 | 42 [0] | [0] 42 | [rtcR]–[glpG] | [rtcR],glpR,glpR,[glpG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3559356 | 0 (0.000) | 42 (1.260) | 39/238 | 0.1 | 100% | coding (1089/1599 nt) | rtcR | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 | 3560986 = | 0 (0.000) | coding (467/831 nt) | glpG | rhomboid intramembrane serine protease | |||||
AAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCAT > NC_000913/3560852‑3561122 | aggtgagcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAgg < 1:71911‑M2/15‑1 (MQ=255) tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAg > 8:93757‑M2/125‑129 (MQ=255) tgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAg < 7:93757‑M2/5‑1 (MQ=255) attttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat < 7:89127‑M2/19‑1 (MQ=255) attttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGatat > 8:89127‑M2/123‑141 (MQ=255) attttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGc > 5:111028‑M2/123‑149 (MQ=255) tcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCgag > 8:24847‑M2/119‑148 (MQ=255) gcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGt < 6:111028‑M2/34‑1 (MQ=255) ttatcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTg > 4:73280‑M2/114‑148 (MQ=255) tcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAgg < 8:24962‑M2/6‑1 (MQ=255) tcgccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAgg > 7:24962‑M2/111‑116 (MQ=255) ccggaacggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAAc > 3:113821‑M2/108‑149 (MQ=255) acggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTg < 8:102840‑M2/47‑1 (MQ=255) cggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTgg < 2:172794‑M2/48‑1 (MQ=255) ggtgcgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTggg > 5:40780‑M2/101‑149 (MQ=255) cgcgatttgcgccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGaa < 7:24847‑M2/53‑1 (MQ=255) ccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGtt > 5:147939‑M2/86‑93 (MQ=255) ccagctggttgccgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGtt < 6:147939‑M2/8‑1 (MQ=255) cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAg > 2:165515‑M2/74‑127 (MQ=255) cgaaggcaaatttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAg < 1:165515‑M2/54‑1 (MQ=255) tttcgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATc < 5:65584‑M2/86‑1 (MQ=255) gcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGc > 5:170246‑M2/60‑119 (MQ=255) gcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGc < 6:170246‑M2/60‑1 (MQ=255) cgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAAt < 4:585‑M2/90‑1 (MQ=255) cgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAAt > 3:585‑M2/59‑148 (MQ=255) gaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATgg < 6:40780‑M2/92‑1 (MQ=255) aagatctgtacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATggc < 3:73280‑M2/93‑1 (MQ=255) tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGaa < 1:40936‑M2/53‑1 (MQ=255) tacgcgcggatcaatctctggaccttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGaa > 2:40936‑M2/49‑101 (MQ=255) cttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGc > 8:148740‑M2/26‑149 (MQ=255) ttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa < 4:108975‑M2/76‑1 (MQ=255) ttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCa > 3:108975‑M2/25‑100 (MQ=255) ttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGtt < 7:142988‑M2/81‑1 (MQ=255) ttcaccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGtt > 8:142988‑M2/25‑105 (MQ=255) caccctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGcc < 4:113821‑M2/125‑1 (MQ=255) cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGaa > 3:71686‑M2/20‑84 (MQ=255) cctgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGaa < 4:71686‑M2/65‑1 (MQ=255) tgccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAAtt > 2:16583‑M2/18‑149 (MQ=255) ccgggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAAtt < 1:16583‑M2/132‑1 (MQ=255) ggtctacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCAt > 7:147307‑M2/13‑149 (MQ=255) tacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGAt < 1:69329‑M2/121‑1 (MQ=255) tacgccagAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGAt > 2:69329‑M2/9‑129 (MQ=255) | AAAGCCCGCCAAACCACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTGATAAGCGTAATGACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCACCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGCGAGAAGTGCATTAACGCGTGGGTGAAGTAACGCCAGAACTCAAATTTCAGTGTTGGATCGAATGGCCAGGCCAGCCATAACATCACTTCCTGATCGCCGAGAATTTGCAT > NC_000913/3560852‑3561122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |