New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4096861 =	35 (0.940)	8 (0.230)	5/248	4.0	18.4%	coding (588/1470 nt)	rhaB	rhamnulokinase
	?	NC_000913	4096886 =	38 (1.080)					coding (563/1470 nt)	rhaB	rhamnulokinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGATAACCGCGCTGGCGGTATCATGGCTGGCAACGGCGACCACTGGAATCTCATTACCCTGCGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAA  >  NC_000913/4096719‑4097000                                                                                                                                               |                                                                                                                                            cgaTAACCGCGCTGGCGGTATCATGGCTGGCAACGGCGACCACTGGAATCTCATTACCCTGCGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCACCGCTCCACGCCAGTAGCGAc                                                                                                                                       <  6:69682/149‑1 (MQ=255)                                                 tctcATTACCCTGCGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGCCTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCg                                                                                       >  3:36406/1‑149 (MQ=255)                                                  ctcATTCCCCTGCGGGCAAATCCAGTGACCTATGAGATTACCCGGATGCGTCGGGCGACCACACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCGCAGTCGTCGCTATTGATATTGACCAGtt                                                                                                     <  7:152542/134‑1 (MQ=255)                                                  ctcATTACCCTGCGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCACAGTCGTCGCTAATTAAATTGACCAGtt                                                                                                     >  8:152542/1‑134 (MQ=255)                                                      ttACCCTGCGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTgg                                                                                   >  7:149847/1‑148 (MQ=255)                                                              cGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTcc                                                                           <  4:36406/148‑1 (MQ=255)                                                                     aTCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCAt                                                                   >  3:35321/1‑149 (MQ=255)                                                                        cAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCTTTGGTATATTCCCAGTTCATCt                                                                 <  8:21715/148‑1 (MQ=255)                                                                                  tGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAgg                                                      <  8:149847/149‑1 (MQ=255)                                                                                    aCATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTgg                                                                                         <  6:113673/112‑1 (MQ=255)                                                                                    aCATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTgg                                                                                         >  5:113673/1‑112 (MQ=255)                                                                                      aTTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGa                                                   >  5:76888/1‑148 (MQ=255)                                                                                      aTTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGa                                                   >  5:21634/1‑148 (MQ=255)                                                                                           ccGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACt                                              >  6:63566/1‑148 (MQ=255)                                                                                             ggATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGaa                                           <  3:69474/149‑1 (MQ=255)                                                                                             ggATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGaa                                           <  6:21634/149‑1 (MQ=255)                                                                                                            ccAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATcag                            >  3:92428/1‑149 (MQ=255)                                                                                                               aaCCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGc                                                              >  6:92287/1‑112 (MQ=255)                                                                                                               aaCCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGc                                                              <  5:92287/112‑1 (MQ=255)                                                                                                                  cAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTatat                                                                              <  1:45186/93‑1 (MQ=255)                                                                                                                  cAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTatat                                                                              >  2:45186/1‑93 (MQ=255)                                                                                                                  cAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCa                                >  6:137626/1‑139 (MQ=255)                                                                                                                  cAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCa                                >  6:3717/1‑139 (MQ=255)                                                                                                                  cAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCa                                <  5:3717/139‑1 (MQ=255)                                                                                                                  cAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCa                                <  5:137626/139‑1 (MQ=255)                                                                                                                    ggCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGt                    <  5:63566/149‑1 (MQ=255)                                                                                                                           ttgGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATTAGCAGAGCGTGAGCAAt             <  6:76888/149‑1 (MQ=255)                                                                                                                             ggCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCaga                        <  6:169319/136‑1 (MQ=255)                                                                                                                             ggCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCaga                        >  5:169319/1‑136 (MQ=255)                                                                                                                              gCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAAtgtg          <  4:35321/149‑1 (MQ=255)                                                                                                                               ccccGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTaa                                       <  1:43579/119‑1 (MQ=255)                                                                                                                               ccccGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTaa                                       >  2:43579/1‑119 (MQ=255)                                                                                                                                   gCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCAt                               <  7:141070/123‑1 (MQ=255)                                                                                                                                   gCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCAt                               >  8:141070/1‑123 (MQ=255)                                                                                                                                       cACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATaa  <  4:92428/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            CGATAACCGCGCTGGCGGTATCATGGCTGGCAACGGCGACCACTGGAATCTCATTACCCTGCGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAA  >  NC_000913/4096719‑4097000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.