Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 572,621 IS2 (+) +5 bp coding (156‑160/456 nt) ybcN → DLP12 prophage; uncharacterized protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)38 (1.030) 34/236 0.2 100% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 = 572625 0 (0.000)coding (160/456 nt) ybcN DLP12 prophage; uncharacterized protein
* ? NC_000913 = 382590NA (NA)37 (1.030) 30/230 0.3 100% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 572621 = 0 (0.000)coding (156/456 nt) ybcN DLP12 prophage; uncharacterized protein

GCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/382442‑382590
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaCATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAAACCAAAGACCTGGTTGATGTCGTAACCGGTGATATCACCA  >  NC_000913/572621‑572766
                                                                                                                                                                                                                                                                                                       
GCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA                                                                                                                                                    >  6:12335/1‑149
              AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCC                                                                                                                                                     <  5:106758/134‑1
              AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCC                                                                                                                                                     >  6:106758/1‑134
                     TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAG                                                                                                                               <  5:12335/149‑1
                          GCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAAT                                                                                                                          <  3:48167/149‑1
                             TTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACC                                                                                                                       >  3:129210/1‑149
                             TTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA                                                                                                                                                    <  8:48857/120‑1
                             TTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA                                                                                                                                                    >  7:48857/1‑120
                                TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGA                                                                                                                            <  6:151295/141‑1
                                TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGA                                                                                                                            >  5:151295/1‑141
                                  ACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATC                                                                                                                  <  3:99305/149‑1
                                            TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGT                                                                                                         >  4:90926/1‑148
                                               GCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGA                                                                                                                            <  3:152001/126‑1
                                               GCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGA                                                                                                                            >  4:152001/1‑126
                                                     TGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTC                                                                                                >  5:60071/1‑148
                                                     TGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTC                                                                                                <  6:60071/148‑1
                                                      GCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAC                                                                                                                                                   <  4:3307/96‑1
                                                      GCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAC                                                                                                                                                   >  3:3307/1‑96
                                                            GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACA                                                                                                                                                  <  8:158815/91‑1
                                                            GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACA                                                                                                                                                  >  7:158815/1‑91
                                                                             GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATG                                                                       <  3:90926/149‑1
                                                                                                      AATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGG                                                                                 <  4:145028/114‑1
                                                                                                      AATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGG                                                                                 >  3:145028/1‑114
                                                                                                       ATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATTCCTCATCAGCAGGGGTAAAACGTTCGCCACTC                                                                                         <  4:4920/105‑1
                                                                                                       ATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTAT                                             <  4:129210/149‑1
                                                                                                       ATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTC                                                                                         >  3:4920/1‑105
                                                                                                            TTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAA                                          >  1:144458/1‑147
                                                                                                            TTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAA                                          <  2:144458/147‑1
                                                                                                                 TGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAAACCA                                      >  4:15013/1‑146
                                                                                                                     AACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTC                                                                                                >  1:186010/1‑84
                                                                                                                     AACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTC                                                                                                <  2:186010/84‑1
                                                                                                                      ACAGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAAACCAAAGACCTG                              >  6:42732/1‑149
                                                                                                                        AGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAG                                                                                                                <  6:144795/65‑1
                                                                                                                        AGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCAT                                                                                                                   >  6:58387/1‑62
                                                                                                                        AGATGTCTGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCAT                                                                                                                   <  5:58387/62‑1
                                                                                                                               TGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCG                                                                                               <  2:48641/75‑1
                                                                                                                               TGGAAATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCG                                                                                               >  1:48641/1‑75
                                                                                                                                    ATATAGGGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAAACCAAAGACCTGGTTGATGTCGTAAC                <  3:15013/149‑1
                                                                                                                                          GGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATC                                                     <  2:73152/106‑1
                                                                                                                                          GGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATC                                                     >  1:73152/1‑106
                                                                                                                                          GGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAAC                                                                                                    >  6:110338/1‑59
                                                                                                                                          GGGCAAATCCACATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAAC                                                                                                    <  5:110338/59‑1
                                                                                                                                                   CACATGTGGTACAGCGAAATCAGGGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAAACCAAAGACCTGGTTGATGTCGTAACCGGTGATATCACCA  <  5:69913/148‑1
                                                                                                                                                                                                                                                                                                       
GCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/382442‑382590
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaCATGTGGTACAGCGAAATCAGTGAATACCTCATCAGCAGGGGTAAAACGTTCGCCACTCCAGCTTGGGTAAAAGATGCTCTCAAACACACATATCTCGGTTATGAAACCAAAGACCTGGTTGATGTCGTAACCGGTGATATCACCA  >  NC_000913/572621‑572766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.