New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	521820 =	21 (0.750)	6 (0.230)	5/222	2.7	23.3%	coding (1405/2415 nt)	ybbP	putative ABC transporter permease
	?	NC_000913	521868 =	20 (0.780)					coding (1453/2415 nt)	ybbP	putative ABC transporter permease

GCTGGATGCTGCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAAT  >  NC_000913/521680‑521967                                                                                                                                             |                                                                                                                                                    ttaatcgccgtcagccgcgcccgcaccaccggataaaacgattccgggactatctgatgttccgcgaggaacgcttttagcggtgctacctgttctgtggcgatgttaattaaaaagtagttcgggctttctggaggtagctgctgctg                                                                                                                                             <  4:39923‑M1/9‑1 (MQ=255)     gATGCTGCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGgtgt                                                                                                                                         >  2:89533/1‑149 (MQ=255)            ctgAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTg                                                                                                                                   <  1:89533/148‑1 (MQ=255)                      ttCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTc                                                                                                                        >  1:99787/1‑149 (MQ=255)                      ttCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCCGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTc                                                                                                                        >  2:75149/1‑149 (MQ=255)                        cgccgcATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCg                                                                                                                       <  2:99787/148‑1 (MQ=255)                                   gCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATc                                                                                                                             <  5:79401/131‑1 (MQ=255)                                   gCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATc                                                                                                                             >  6:79401/1‑131 (MQ=255)                                             cTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTAcc                                                                                                 >  3:49042/1‑149 (MQ=255)                                                           gttccgcgaggaacgcttttagcggtgctacctgttctgtggcgatgttaattaaaaagtagttcgggctttctggaggtagCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGcagcagcag                                                                                                      <  6:22175‑M1/48‑1 (MQ=255)                                                           gttccgcgaggaacgcttttagcggtgctacctgttctgtggcgatgttaattaaaaagtagttcgggctttctggaggtagCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGcagcagcag                                                                                                      >  5:22175‑M1/83‑130 (MQ=255)                                                            gCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCg                                                                                    <  4:49042/147‑1 (MQ=255)                                                             tccgcgaggaacgcttttagcggtgctacctgttctgtggcgatgttaattaaaaagtagttcgggctttctggaggtagCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGgcagcagca                                                                                                       >  8:119340‑M1/81‑127 (MQ=255)                                                             tccgcgaggaacgcttttagcggtgctacctgttctgtggcgatgttaattaaaaagtagttcgggctttctggaggtagCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGgcagcagca                                                                                                       <  7:119340‑M1/47‑1 (MQ=255)                                                                        cTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCCGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTttaat                                                                      <  1:75149/149‑1 (MQ=255)                                                                             aCGTCAGCCGTGGTCAACGTTAAGTCAGCTATCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAAc                                                                  <  2:16009/148‑1 (MQ=255)                                                                                         cctgttctgtggcgatgttaattaaaaagtagttcgggctttctggaggtagCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGgcagcagca                                                                                                       <  7:112921‑M1/47‑1 (MQ=255)                                                                                         cctgttctgtggcgatgttaattaaaaagtagttcgggctttctggaggtagCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGgcagcagca                                                                                                       >  8:112921‑M1/53‑99 (MQ=255)                                                                                           cAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAg                                                   >  2:57198/1‑149 (MQ=255)                                                                                           cAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAg                                                   >  2:54952/1‑149 (MQ=255)                                                                                            aaCGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAgg                                                  <  1:54952/149‑1 (MQ=255)                                                                                            aaCGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAgg                                                  <  1:57198/149‑1 (MQ=255)                                                                                                               gCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGt                                >  7:109023/1‑148 (MQ=255)                                                                                                               gCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGt                                <  8:109023/148‑1 (MQ=255)                                                                                                                 aTTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTcc                             >  1:1602/1‑149 (MQ=255)                                                                                                                             cTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATc                 <  2:1602/149‑1 (MQ=255)                                                                                                                                            aCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAAt  >  3:39923/1‑149 (MQ=255)                                                                                                                                            aCTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAAt  >  1:75331/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                    GCTGGATGCTGCTGAATGTACTTCGCCGCATGACGCTGAAATCGCTGCCTCTGCGCCTGGCGGTTAGCCGCCTGTTACGTCAGCCGTGGTCAACGTTAAGTCAGCTTTCGGCATTTTCGCTCTCCTTTATGCTGCTGGCACTGCTGCTGGTGTTGCGTGGCGATCTGCTCGACCGCTGGCAGCAGCAGCTACCTCCAGAAAGCCCGAACTACTTTTTAATTAACATCGCCACAGAACAGGTAGCACCGCTAAAAGCGTTCCTCGCGGAACATCAGATAGTCCCGGAAT  >  NC_000913/521680‑521967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.