New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1300693	NA (NA)	13 (0.520)	5/254	2.3	44.8%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 1311378	16 (0.640)					coding (290/720 nt)	tonB	membrane spanning protein in TonB‑ExbB‑ExbD transport complex

TGGTTACGCCTGCTGATCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTCGCGTCCGGCATCACCGTTTGAAAATACGGCACCGGCACGCCTGACATCAAGTACAGCAACGGCTGCAACCAGCAAGCCGG  >  NC_000913/1311234‑1311524                                                                                                                                                 |                                                                                                                                                   tGGTTACGCCTGCTGATCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGcc                                                                                                                                                 >  1:38690/1‑148 (MQ=255)       cGCCTGCTGATCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAAcc                                                                                                                                           <  2:38690/148‑1 (MQ=255)          ctgctgATCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGa                                                                                                                                         <  3:81639/147‑1 (MQ=255)          ctgctgATCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGa                                                                                                                                         >  4:81639/1‑147 (MQ=255)               gATCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGt                                                                                                                                  <  4:92586/149‑1 (MQ=255)                aTCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCgg                                                                                                                                   <  1:107828/147‑1 (MQ=255)                                  ccGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTG‑AAAAGGTACAGGagcagc                                                                                                              >  2:127225/1‑149 (MQ=255)                                                            gtAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTa                                                                                       >  3:103826/1‑147 (MQ=255)                                                            gtAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTa                                                                                       <  4:103826/147‑1 (MQ=255)                                                                                tGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTCGCGTCCgg                                                                          <  6:57357/140‑1 (MQ=255)                                                                                tGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTCGCGTCCgg                                                                          >  5:57357/1‑140 (MQ=255)                                                                                      gATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTa                                                                                       >  3:58257/1‑121 (MQ=255)                                                                                      gATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTa                                                                                       <  4:58257/121‑1 (MQ=255)                                                                                         atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTcgc                                                                                >  1:126552‑M2/54‑125 (MQ=255)                                                                                         atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTcgc                                                                                <  2:126552‑M2/72‑1 (MQ=255)                                                                                                   ccAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCg                                                                                                                                    <  4:14400/63‑1 (MQ=255)                                                                                                     aaaaGAAGCACCGGTGGTCATTGAACAGCCGCAGCCGAAACCTAAGCCAAAACCGCAGCCGGTGAAACAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTCGCGTCCGGCCTCACCGGTTGAAAATAcggcaccggcac                                            >  7:89131/1‑149 (MQ=255)                                                                                                                  gtggtCATTGAAAAGCCGAAGCCGAAACCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttc                               <  7:71699‑M2/149‑118 (MQ=255)                                                                                                                        aTTGAAAAGCCGAAGCCGAAACCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                       >  5:33048‑M2/1‑26 (MQ=255)                                                                                                                        aTTGAAAAGCCGAAGCCGAAACCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                       <  6:33048‑M2/103‑78 (MQ=255)                                                                                                                                    aagccgaaACCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtt             >  8:71699‑M2/1‑14 (MQ=255)                                                                                                                                    aagccgaaACCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgt              <  8:67661‑M2/148‑135 (MQ=255)                                                                                                                                               tAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTCGCGTCCGGCATCACCGTTTGAAAATACGGCACCGGCACGCCTGACATCAAGTACAGCAACGGCTGCAACCAGCAAGCCgg  >  3:88187/1‑149 (MQ=255)                                                                                                                                                aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcc                                                         >  6:72285‑M2/1‑2 (MQ=255)                                                                                                                                                aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcc                                                         <  5:72285‑M2/93‑92 (MQ=255)                                                                                                                                                aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt                                                                                              <  1:32867‑M2/56‑55 (MQ=255)                                                                                                                                                aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt                                                                                              >  2:32867‑M2/1‑2 (MQ=255)                                                                                                                                                 aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt                                         >  7:2848‑M2/1‑1 (MQ=255)                                                                                                                                                 aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt                                         <  8:2848‑M2/108‑108 (MQ=255)                                                                                                                                                 aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcct                                             >  7:25461‑M2/1‑1 (MQ=255)                                                                                                                                                 aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcct                                             <  8:25461‑M2/104‑104 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TGGTTACGCCTGCTGATCTCGAACCGCCACAAGCCGTTCAGCCGCCACCGGAGCCGGTGGTAGAGCCAGAACCGGAACCTGAGCCGATCCCCGAACCGCCAAAAGAAGCACCGGTGGTCATTGAAAAGCCGAAGCCGAAACCTAAGCCAAAACCGAAGCCGGTGAAAAAGGTACAGGAGCAGCCAAAACGCGATGTCAAACCCGTAGAGTCGCGTCCGGCATCACCGTTTGAAAATACGGCACCGGCACGCCTGACATCAAGTACAGCAACGGCTGCAACCAGCAAGCCGG  >  NC_000913/1311234‑1311524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.