Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
19 4 8
21 2 4
23 4 8
4 11 22

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 42 223
Multiple Base Substitutions 0 0
Deletions 5 24
Insertions 5 25
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 52 272

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 30 0 406.8 14012426 98.2% 13760202 90.7
A0 F0 I1 R1 11 0 407.7 14064274 98.3% 13825181 90.8
A19 F18 I0 R1 285 0 135.8 3090856 94.0% 2905404 140.4
A19 F18 I1 R1 11 0 50.9 1137152 97.8% 1112134 141.0
A19 F42 I0 R1 16 0 20.9 472652 94.4% 446183 140.7
A19 F42 I1 R1 13 0 27.6 610674 98.5% 601513 141.0
A19 F57 I0 R1 18 0 37.5 860368 95.0% 817349 140.9
A19 F57 I1 R1 16 0 36.0 829726 94.0% 779942 141.0
A19 F74 I0 R1 21 0 36.7 824702 95.0% 783466 140.9
A19 F74 I1 R1 14 0 98.0 2279172 93.9% 2140142 133.7
A21 F17 I0 R1 15 0 34.0 794826 94.7% 752700 140.9
A21 F17 I1 R1 11 0 22.6 526280 94.3% 496282 139.9
A21 F42 I0 R1 24 0 30.6 687070 95.0% 652716 140.9
A21 F42 I1 R1 11 0 39.5 871456 98.2% 855769 141.0
A23 F18 I0 R1 31 0 91.8 2059714 95.2% 1960847 141.0
A23 F18 I1 R1 10 0 38.5 883940 94.6% 836207 141.0
A23 F43 I0 R1 23 0 38.0 846132 95.3% 806363 140.8
A23 F43 I1 R1 11 0 20.8 477872 94.5% 451589 140.9
A23 F58 I0 R1 19 0 25.6 590480 94.5% 558003 140.9
A23 F58 I1 R1 13 0 38.0 843732 98.2% 828544 141.0
A23 F74 I0 R1 29 0 68.9 1565664 94.4% 1477986 140.9
A23 F74 I1 R1 13 0 20.1 450294 97.3% 438136 141.0

Mutation Needle Plot

Mutation Targets

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