Notes

Publication:

10.3389/fmicb.2018.01793

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
17 1 3
18 1 3
19 1 3
4 4 10

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 27 57
Multiple Base Substitutions 0 0
Deletions 7 28
Insertions 1 1
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 35 86

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 22 0 54.8 1027041 97.5% 1001364 256.9
A17 F170 I0 R1 51 0 54.6 994242 97.2% 966403 254.6
A17 F170 I1 R1 9 0 78.0 2711298 95.1% 2578444 141.4
A17 F170 I2 R1 9 0 62.7 2187640 94.7% 2071695 141.8
A18 F169 I0 R1 38 0 105.4 1776210 98.5% 1749566 271.8
A18 F169 I1 R1 8 0 74.3 2592028 94.4% 2446874 142.5
A18 F169 I2 R1 11 0 67.8 2359402 94.4% 2227275 142.6
A19 F171 I0 R1 46 0 92.7 1618788 98.8% 1599362 260.2
A19 F171 I1 R1 12 0 41.9 1461196 94.2% 1376446 142.8
A19 F171 I2 R1 12 0 67.4 2333626 95.0% 2216944 142.6

Mutation Needle Plot

Mutation Targets

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