breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence position mutation annotation gene description
RA 2,399,955 C→A E56* (GAA→TAA)  lrhA ← transcriptional repressor of flagellar, motility and chemotaxis genes

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 2208294 2209110 817 28 [27] [26] 28 mlrA mlrA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 19796 =NA (NA)34 (0.460) 30/270 2.3 41.0% noncoding (768/768 nt) IS1 repeat region
?CP009273 242829 = 49 (0.670)coding (161/261 nt) dinJ antitoxin of YafQ‑DinJ toxin‑antitoxin system
* ? CP009273 = 20563NA (NA)50 (0.680) 41/270 1.2 52.6% noncoding (1/768 nt) IS1 repeat region
?CP009273 = 242836 45 (0.610)coding (154/261 nt) dinJ antitoxin of YafQ‑DinJ toxin‑antitoxin system
* ? CP009273 360104 =74 (1.010)79 (1.080) 61/270 0.2 51.6% intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 NA (NA)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 = 120326127 (0.370)33 (0.510) 31/238 1.7 54.6% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 = 1205058 31 (0.480)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related