mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 36,137 | C→A | 7.6% | R9L (CGC→CTC) | caiD ← | carnitinyl‑CoA dehydratase |
| RA | 39,484 | C→A | 8.1% | A301A (GCG→GCT) | caiA ← | crotonobetaine reductase subunit II, FAD‑binding |
| RA | 59,116 | C→T | 8.6% | pseudogene (65/228 nt) | yabP → | pseudogene, pentapeptide repeats‑containing |
| RA | 93,700 | G→A | 5.4% | G43S (GGC→AGC) | murD → | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase |
| RA | 140,252 | C→A | 7.7% | R22S (CGT→AGT) | yadH → | inner membrane putative ABC superfamily transporter permease |
| RA | 158,081 | C→A | 5.2% | S146S (TCG→TCT) | ligT ← | 2'‑5' RNA ligase |
| RA | 193,172 | C→A | 13.3% | A47E (GCG→GAG) | rseP → | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease |
| RA | 208,073 | G→A | 6.1% | A636A (GCG→GCA) | ldcC → | lysine decarboxylase 2, constitutive |
| RA | 221,163 | A→G | 5.3% | noncoding (906/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,373:1 | +G | 6.7% | noncoding (1116/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,380 | T→A | 7.0% | noncoding (1123/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,390 | Δ1 bp | 7.0% | noncoding (1133/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,391 | G→A | 7.0% | noncoding (1134/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,393 | C→T | 7.1% | noncoding (1136/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,395 | G→A | 7.2% | noncoding (1138/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,397 | C→T | 7.1% | noncoding (1140/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,398 | C→T | 7.1% | noncoding (1141/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,402 | A→C | 7.1% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,407 | A→T | 7.3% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,412 | A→T | 7.5% | noncoding (1155/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,420 | A→G | 7.7% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 12.6% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 12.9% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,455 | G→A | 12.5% | noncoding (1198/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 305,989 | G→T | 5.1% | L132M (CTG→ATG) | ecpA ← | ECP pilin |
| RA | 335,782 | A→G | 6.5% | intergenic (+328/‑94) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 335,796:1 | +T | 7.2% | intergenic (+342/‑80) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 345,512 | C→T | 5.4% | intergenic (+229/‑211) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| JC JC | 370,378 | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences (–) +8 bp :: +ATCTGC | 11.0% | intergenic (+41/‑530) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 372,807 | Δ1 bp | 16.4% | intergenic (+40/+184) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 372,808 | G→A | 16.1% | intergenic (+41/+183) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 470,547 | C→A | 7.7% | G24V (GGC→GTC) | tesB ← | acyl‑CoA thioesterase 2 |
| RA | 492,656 | C→A | 8.2% | P9Q (CCG→CAG) | adk → | adenylate kinase |
| RA | 573,721 | C→G | 17.0% | D53E (GAC→GAG) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 605,631 | Δ1 bp | 5.4% | intergenic (‑96/+79) | entD ← / ← fepA | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter |
| RA | 664,017 | A→T | 9.5% | I52K (ATA→AAA) | rlmH ← | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent |
| RA | 686,512 | C→A | 6.6% | V243V (GTG→GTT) | ybeX ← | putative ion transport |
| RA | 727,315 | T→C | 5.9% | H759H (CAT→CAC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,325 | A→G | 6.2% | N763D (AAT→GAT) ‡ | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,327 | T→A | 6.0% | N763K (AAT→AAA) ‡ | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,329 | A→C | 6.4% | E764A (GAA→GCA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,369 | A→G | 5.9% | A777A (GCA→GCG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,375 | A→G | 5.8% | G779G (GGA→GGG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 6.7% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 728,467 | T→C | 5.4% | I1143I (ATT→ATC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 730,083 | G→A | 12.2% | pseudogene (495/1521 nt) | rhsO → | pseudogene, Rhs family protein |
| RA | 733,602 | G→A | 6.1% | A19T (GCC→ACC) | ybfD → | H repeat‑associated putative transposase |
| RA | 736,248 | A→G | 5.2% | K429R (AAA→AGA) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 746,597 | G→A | 10.5% | R343R (CGC→CGT) | ybgQ ← | putative outer membrane protein |
| RA | 775,713 | G→A | 6.0% | M220I (ATG→ATA) | ybgF → | periplasmic TolA‑binding protein |
| RA | 777,208 | C→A | 11.3% | intergenic (+100/‑333) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 783,865 | G→A | 10.8% | G143G (GGC→GGT) | galM ← | aldose 1‑epimerase; type‑1 mutarotase |
| RA | 815,593 | C→A | 8.5% | T85K (ACG→AAG) | ybhL → | UPF0005 family inner membrane protein |
| RA | 821,705 | C→T | 8.8% | S335N (AGC→AAC) | ybhS ← | inner membrane putative ABC superfamily transporter permease |
| RA | 849,600 | G→T | 5.5% | L166L (CTG→CTT) | ybiR → | putative transporter |
| RA | 910,671 | T→G | 10.7% | intergenic (‑358/+137) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 973,498:1 | +C | 5.2% | coding (1717/4461 nt) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 975,954 | C→A | 8.0% | R1391R (CGC→CGA) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 985,161 | G→A | 6.6% | Q218* (CAG→TAG) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,013,783 | A→T | 8.7% | intergenic (‑28/‑158) | ycbZ ← / → matP | putative peptidase/Ter macrodomain organizer matS‑binding protein |
| RA | 1,040,738 | G→T | 6.2% | Y174* (TAC→TAA) | gfcE ← | putative O‑antigen capsule outer membrane auxillary protein export channel |
| RA | 1,084,555 | G→T | 18.1% | G253G (GGC→GGA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,095,551 | G→A | 6.1% | E152E (GAG→GAA) | ycdY → | redox enzyme maturation protein (REMP) chaperone for YcdX |
| RA | 1,145,508 | G→T | 7.8% | D109Y (GAT→TAT) | fabD → | malonyl‑CoA‑[acyl‑carrier‑protein] transacylase |
| RA | 1,169,957 | A→G | 11.3% | L222P (CTG→CCG) | ycfT ← | inner membrane protein |
| RA | 1,203,100 | C→T | 5.3% | C48C (TGC→TGT) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,242,981 | G→T | 9.5% | intergenic (‑149/+171) | treA ← / ← dhaM | periplasmic trehalase/putative dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
| RA | 1,250,094 | G→T | 5.2% | R439S (CGT→AGT) | ycgV ← | putative adhesin |
| RA | 1,264,818 | G→T | 9.8% | noncoding (40/67 nt) | rdlA → | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA |
| RA | 1,264,932 | T→G | 6.4% | intergenic (+87/+227) | rdlA → / ← ldrB | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA/toxic polypeptide, small |
| RA | 1,265,888 | T→G | 8.3% | noncoding (40/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,282,249 | A→G | 11.5% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,439 | A→G | 5.8% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,284,178 | G→T | 8.0% | P137P (CCC→CCA) | ychJ ← | UPF0225 family protein |
| RA | 1,306,817 | G→T | 11.4% | L111M (CTG→ATG) | yciB ← | IspA family inner membrane protein |
| RA | 1,330,520 | A→G | 7.7% | N145D (AAC→GAC) | acnA → | aconitate hydratase 1 |
| RA | 1,351,147 | G→A | 11.4% | P74L (CCC→CTC) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| RA | 1,353,843 | G→T | 9.6% | F441L (TTC→TTA) | puuA ← | glutamate‑‑putrescine ligase |
| RA | 1,354,630 | C→T | 10.5% | C179Y (TGC→TAC) | puuA ← | glutamate‑‑putrescine ligase |
| RA | 1,355,126 | G→T | 9.3% | Q14K (CAG→AAG) | puuA ← | glutamate‑‑putrescine ligase |
| RA | 1,393,328 | T→C | 7.7% | K152K (AAA→AAG) | fnr ← | oxygen‑sensing anaerobic growth regulon transcriptional regulator; autorepressor |
| RA | 1,422,040 | A→G | 9.1% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 12.1% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,627 | A→G | 7.3% | pseudogene (357/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,648 | G→C | 5.9% | pseudogene (336/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,798 | A→G | 5.5% | pseudogene (186/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,460,458 | T→C | 7.3% | pseudogene (810/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,467 | G→A | 9.3% | pseudogene (819/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,593 | C→G | 8.7% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,478,007 | G→T | 8.0% | A230A (GCG→GCT) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,579,178 | C→A | 8.7% | A522A (GCG→GCT) | ydeP ← | putative oxidoreductase |
| RA | 1,637,078 | C→A | 9.2% | E141* (GAA→TAA) | quuQ ← | Qin prophage; putative antitermination protein Q |
| RA | 1,673,251 | G→A | 10.0% | A190T (GCA→ACA) | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,679,434 | G→T | 16.7% | V307F (GTT→TTT) | tus → | inhibitor of replication at Ter, DNA‑binding protein |
| RA | 1,705,966 | G→T | 9.7% | A63S (GCG→TCG) | nth → | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| RA | 1,788,668 | C→A | 7.7% | A248S (GCG→TCG) | btuC ← | vitamin B12 transporter subunit: membrane component of ABC superfamily |
| RA | 1,807,926 | G→A | 14.8% | intergenic (‑6/‑198) | cedA ← / → katE | cell division modulator/catalase HPII, heme d‑containing |
| RA | 1,810,481 | T→A | 12.5% | intergenic (+96/+162) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
| RA | 1,862,280 | C→T | 7.3% | R372R (CGC→CGT) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,891,649 | Δ1 bp | 5.8% | coding (461/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,891,650 | Δ1 bp | 5.8% | coding (462/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,891,652 | Δ1 bp | 5.8% | coding (464/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,891,653 | Δ1 bp | 5.9% | coding (465/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,891,654 | Δ1 bp | 5.8% | coding (466/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,891,655 | Δ1 bp | 5.8% | coding (467/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,891,660 | Δ1 bp | 5.7% | coding (472/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,891,661 | Δ1 bp | 5.7% | coding (473/1365 nt) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,903,899 | G→T | 6.5% | A153E (GCA→GAA) | kdgR ← | KDG regulon transcriptional repressor |
| RA | 1,915,625 | G→T | 14.7% | R382R (CGG→CGT) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| RA | 1,922,095 | C→T | 6.0% | Q334Q (CAG→CAA) | ptrB ← | protease II |
| RA | 1,924,637 | C→A | 12.3% | R4I (AGA→ATA) | yebF ← | extracellular Colicin M immunity family protein |
| RA | 2,044,882 | C→A | 9.3% | T2155K (ACA→AAA) | yeeJ → | putative adhesin |
| RA | 2,061,641 | G→T | 6.0% | intergenic (‑268/+101) | yoeG ← / ← yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,110,046 | C→A | 12.0% | R188M (AGG→ATG) | wcaL ← | putative glycosyl transferase |
| RA | 2,112,103 | A→G | 7.6% | intergenic (‑218/+58) | wcaK ← / ← wzxC | colanic acid biosynthesis protein/putative colanic acid exporter |
| RA | 2,118,284:1 | +C | 11.8% | coding (944/1224 nt) | wcaI ← | putative glycosyl transferase |
| RA | 2,118,284:2 | +G | 11.8% | coding (944/1224 nt) | wcaI ← | putative glycosyl transferase |
| RA | 2,118,289:1 | +G | 12.1% | coding (939/1224 nt) | wcaI ← | putative glycosyl transferase |
| RA | 2,118,289:2 | +G | 12.1% | coding (939/1224 nt) | wcaI ← | putative glycosyl transferase |
| RA | 2,118,289:3 | +A | 12.1% | coding (939/1224 nt) | wcaI ← | putative glycosyl transferase |
| RA | 2,118,289:4 | +G | 12.1% | coding (939/1224 nt) | wcaI ← | putative glycosyl transferase |
| RA | 2,118,293 | T→A | 12.1% | Q312L (CAA→CTA) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,294 | G→T | 12.0% | Q312K (CAA→AAA) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,295 | C→T | 12.3% | V311V (GTG→GTA) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,296 | A→G | 12.1% | V311A (GTG→GCG) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,298 | C→G | 12.9% | V310V (GTG→GTC) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,299 | A→T | 12.9% | V310E (GTG→GAG) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,300 | C→A | 12.9% | V310L (GTG→TTG) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,301 | C→T | 12.9% | L309L (CTG→CTA) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,303 | G→C | 12.9% | L309V (CTG→GTG) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,304 | A→C | 12.9% | H308Q (CAT→CAG) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,118,305 | T→G | 12.9% | H308P (CAT→CCT) ‡ | wcaI ← | putative glycosyl transferase |
| RA | 2,120,184 | G→A | 6.1% | P163L (CCG→CTG) | wcaG ← | bifunctional GDP‑fucose synthetase: GDP‑4‑dehydro‑6‑deoxy‑D‑mannose epimerase/ GDP‑4‑dehydro‑6‑L‑deoxygalactose reductase |
| RA | 2,146,958 | A→G | 10.4% | intergenic (+26/‑167) | sibA → / → sibB | sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
| RA | 2,146,979 | C→A | 6.4% | intergenic (+47/‑146) | sibA → / → sibB | sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
| RA | 2,146,982 | A→C | 7.2% | intergenic (+50/‑143) | sibA → / → sibB | sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
| RA | 2,146,984 | T→A | 8.5% | intergenic (+52/‑141) | sibA → / → sibB | sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
| RA | 2,147,005 | G→A | 9.9% | intergenic (+73/‑120) | sibA → / → sibB | sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
| RA | 2,147,006 | A→G | 8.1% | intergenic (+74/‑119) | sibA → / → sibB | sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
| RA | 2,174,546 | G→T | 5.2% | A325S (GCG→TCG) | yegU → | ADP‑ribosylglycohydrolase family protein |
| RA | 2,202,609 | C→A | 5.1% | pseudogene (31/2001 nt) | yehQ → | pseudogene |
| RA | 2,202,686 | C→A | 5.8% | pseudogene (108/2001 nt) | yehQ → | pseudogene |
| RA | 2,233,446 | C→A | 10.1% | A128S (GCC→TCC) | mglB ← | methyl‑galactoside transporter subunit |
| RA | 2,234,573 | G→T | 8.6% | A192D (GCC→GAC) | galS ← | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
| RA | 2,298,241 | T→C | 11.0% | intergenic (+369/+346) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,298,492 | A→G | 8.5% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,298,498 | T→C | 6.5% | intergenic (+626/+89) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,313,175 | G→T | 8.0% | R61S (CGC→AGC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,317,760 | C→T | 9.3% | A58V (GCG→GTG) | atoA → | acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
| RA | 2,326,347 | C→A | 8.9% | pseudogene (1535/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| RA | 2,337,427 | G→T | 5.6% | A74A (GCC→GCA) | yfaL ← | adhesin |
| RA | 2,339,769 | G→T | 5.9% | D476Y (GAT→TAT) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| RA | 2,362,727 | C→A | 5.9% | R404S (CGC→AGC) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,368,831 | C→A | 5.1% | R204L (CGT→CTT) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,386,895 | A→C | 5.8% | L544R (CTG→CGG) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| RA | 2,399,955 | C→A | 84.3% | E56* (GAA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,447,549 | T→C | 5.7% | pseudogene (932/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| RA | 2,452,532 | G→T | 6.3% | A36D (GCC→GAC) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,594,224 | G→T | 5.4% | G130C (GGC→TGC) | bcp → | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent |
| RA | 2,615,831 | C→T | 7.5% | P80L (CCC→CTC) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,674,989 | C→T | 5.6% | L372L (CTG→CTA) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,677,535 | G→T | 11.5% | intergenic (+120/+78) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,701,429 | G→A | 6.9% | Q229* (CAG→TAG) | rseB ← | anti‑sigma E factor, binds RseA |
| RA | 2,711,646 | G→A | 10.3% | P81L (CCG→CTG) | yfiF ← | putative methyltransferase |
| RA | 2,719,365 | A→C | 12.7% | intergenic (‑260/+63) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,719,426 | T→C | 12.5% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,745,804 | G→T | 6.6% | L217L (CTG→CTT) | recN → | recombination and repair protein |
| RA | 2,769,317 | G→C | 7.3% | G14R (GGA→CGA) | yfjX → | CP4‑57 prophage; putative antirestriction protein |
| RA | 2,775,485 | G→T | 6.5% | Q201K (CAG→AAG) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,776,157 | A→G | 8.7% | intergenic (‑72/+267) | ypjA ← / ← pinH | adhesin‑like autotransporter/pseudogene, invertase resolvase family |
| RA | 2,794,395 | C→A | 10.8% | P24P (CCC→CCA) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,796,461 | G→T | 5.1% | A585A (GCG→GCT) | nrdE → | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| RA | 2,798,218 | C→A | 7.8% | G15G (GGC→GGA) | proV → | glycine betaine transporter subunit |
| RA | 2,813,783 | C→A | 5.9% | A530S (GCG→TCG) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,813,829 | G→T | 7.0% | G514G (GGC→GGA) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,823,524 | C→A | 11.8% | A118E (GCG→GAG) | srlQ → | D‑arabinose 5‑phosphate isomerase |
| RA | 2,884,981 | C→A | 15.9% | V93F (GTT→TTT) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,889,634 | G→A | 6.1% | A94V (GCG→GTG) | ygcR ← | putative flavoprotein |
| RA | 2,917,469 | T→C | 9.8% | T2A (ACC→GCC) | yqcC ← | DUF446 family protein |
| RA | 2,920,125 | C→A | 5.3% | C153* (TGC→TGA) | ygdH → | UPF0717 family protein |
| RA | 2,933,427 | G→A | 6.4% | R234H (CGC→CAC) | fucR → | l‑fucose operon activator |
| RA | 2,963,345 | G→T | 9.8% | E109* (GAA→TAA) | mutH → | methyl‑directed mismatch repair protein |
| RA | 3,000,647 | G→A | 8.7% | G343S (GGT→AGT) | ygeW → | putative carbamoyltransferase |
| RA | 3,015,327 | T→A | 6.2% | L218Q (CTG→CAG) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,143,950 | C→A | 13.1% | intergenic (+45/+227) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| RA | 3,152,391 | C→A | 6.6% | A705A (GCG→GCT) | ygiQ ← | Radical SAM superfamily protein |
| RA | 3,157,477 | T→A | 8.3% | K619M (AAG→ATG) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,173,939 | G→A | 6.8% | E54K (GAA→AAA) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,173,943 | T→G | 6.6% | L55R (CTG→CGG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,173,946 | Δ1 bp | 6.2% | coding (167/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,174,148 | A→G | 9.2% | S123S (TCA→TCG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,189,615 | C→T | 5.4% | L166L (CTG→CTA) | hldE ← | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
| RA | 3,216,152 | A→G | 7.6% | D54G (GAC→GGC) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
| RA | 3,225,833 | C→T | 5.7% | S270S (AGC→AGT) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,231,877 | C→A | 8.3% | intergenic (+221/‑62) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,242,439 | G→A | 7.3% | A38T (GCC→ACC) | yqjC → | DUF1090 family putative periplasmic protein |
| RA | 3,310,696 | Δ1 bp | 5.5% | coding (190/1488 nt) | nusA ← | transcription termination/antitermination L factor |
| RA | 3,310,697 | Δ1 bp | 5.5% | coding (189/1488 nt) | nusA ← | transcription termination/antitermination L factor |
| RA | 3,310,698 | Δ1 bp | 5.5% | coding (188/1488 nt) | nusA ← | transcription termination/antitermination L factor |
| RA | 3,310,699 | Δ1 bp | 5.5% | coding (187/1488 nt) | nusA ← | transcription termination/antitermination L factor |
| RA | 3,310,700 | Δ1 bp | 5.5% | coding (186/1488 nt) | nusA ← | transcription termination/antitermination L factor |
| RA | 3,330,960 | G→A | 6.6% | F97F (TTC→TTT) | mlaC ← | ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein |
| RA | 3,334,296 | C→A | 5.9% | S221R (AGC→AGA) | yrbG → | putative calcium/sodium:proton antiporter |
| RA | 3,338,859 | C→A | 6.7% | Q262K (CAG→AAG) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,356,501 | C→A | 6.7% | S112S (TCC→TCA) | yhcD → | putative outer membrane fimbrial subunit usher protein |
| RA | 3,390,542 | T→C | 5.8% | T205A (ACC→GCC) | rng ← | ribonuclease G |
| RA | 3,407,558 | G→T | 7.5% | A112A (GCG→GCT) | acrE → | cytoplasmic membrane lipoprotein |
| RA | 3,408,099 | C→T | 6.4% | R293C (CGT→TGT) | acrE → | cytoplasmic membrane lipoprotein |
| RA | 3,408,967 | G→A | 6.8% | L192L (CTG→CTA) | acrF → | multidrug efflux system protein |
| RA | 3,414,397 | A→G | 5.5% | N302S (AAC→AGC) | yhdX → | putative amino‑acid transporter subunit |
| RA | 3,416,890 | T→G | 8.6% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 11.3% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,421,849 | T→A | 5.8% | noncoding (273/1542 nt) | rrsD ← | 16S ribosomal RNA of rrnD operon |
| RA | 3,464,590 | G→A | 5.4% | T33T (ACC→ACT) | tufA ← | translation elongation factor EF‑Tu 1 |
| RA | 3,530,283 | G→T | 6.9% | S38I (AGT→ATT) | greB → | transcript cleavage factor |
| RA | 3,541,739 | C→G | 9.5% | G564A (GGC→GCC) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
| RA | 3,556,972 | T→C | 6.2% | intergenic (+94/+175) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,556,973 | G→A | 6.2% | intergenic (+95/+174) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,556,976 | T→A | 6.1% | intergenic (+98/+171) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,556,977 | T→C | 6.1% | intergenic (+99/+170) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,556,978 | A→C | 5.3% | intergenic (+100/+169) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,562,212 | T→C | 8.3% | K159K (AAA→AAG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,567,582 | G→T | 5.4% | G219G (GGC→GGA) | asd ← | aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
| RA | 3,576,465 | C→A | 18.1% | pseudogene (68/381 nt) | yrhA → | pseudogene, interrupted by IS1E |
| RA | 3,604,180 | C→A | 7.0% | W305L (TGG→TTG) | yhhS ← | putative arabinose efflux transporter |
| RA | 3,612,581 | T→C | 7.1% | G10G (GGT→GGC) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| RA | 3,616,121 | G→C | 6.8% | R1190R (CGG→CGC) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| RA | 3,632,564 | Δ1 bp | 8.6% | intergenic (+63/+181) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,643,118 | T→A | 14.3% | L275Q (CTG→CAG) | arsB → | arsenite/antimonite transporter |
| RA | 3,649,097 | C→A | 6.0% | V56L (GTG→TTG) | yhiD ← | putative Mg(2+) transport ATPase, inner membrane protein |
| RA | 3,655,168 | G→T | 5.3% | E465D (GAG→GAT) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,663,838 | G→A | 5.3% | W296* (TGG→TAG) | treF → | cytoplasmic trehalase |
| RA | 3,664,466 | C→T | 8.2% | H505H (CAC→CAT) | treF → | cytoplasmic trehalase |
| RA | 3,686,614 | C→T | 5.0% | P661P (CCG→CCA) | bcsA ← | cellulose synthase, catalytic subunit |
| RA | 3,734,745 | G→A | 9.3% | C66C (TGC→TGT) | ysaA ← | putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,750,722 | C→A | 8.1% | A156S (GCG→TCG) | yiaY ← | putative Fe‑containing alcohol dehydrogenase, Pfam00465 family |
| RA | 3,768,250 | C→A | 7.4% | A156D (GCC→GAC) | mtlD → | mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,768,608 | G→T | 5.7% | Q275H (CAG→CAT) | mtlD → | mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,886,383 | G→T | 5.5% | D87Y (GAT→TAT) | yidZ → | putative DNA‑binding transcriptional regulator |
| RA | 3,935,371 | G→T | 7.0% | noncoding (204/1542 nt) | rrsC → | 16S ribosomal RNA of rrnC operon |
| RA | 3,965,897 | A→G | 8.0% | I6V (ATA→GTA) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,972,523 | G→A | 5.4% | S188N (AGC→AAC) | wzyE → | putative ECA polysaccharide chain elongation protein |
| RA | 4,037,083 | C→A | 9.4% | G102G (GGC→GGA) | dsbA → | periplasmic protein disulfide isomerase I |
| RA | 4,041,921 | G→T | 6.2% | P532P (CCG→CCT) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
| RA | 4,047,523 | G→A | 7.4% | A372A (GCC→GCT) | glnG ← | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| RA | 4,049,683 | T→C | 6.6% | Q6R (CAG→CGG) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,073,367 | G→A | 5.0% | intergenic (+38/+292) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,368 | C→G | 5.3% | intergenic (+39/+291) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,371 | G→T | 6.5% | intergenic (+42/+288) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,417 | G→A | 15.0% | intergenic (+88/+242) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,418 | T→A | 6.8% | intergenic (+89/+241) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,420 | G→A | 12.1% | intergenic (+91/+239) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,422 | A→G | 18.6% | intergenic (+93/+237) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,423 | T→C | 18.6% | intergenic (+94/+236) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,433 | G→A | 14.1% | intergenic (+104/+226) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,073,434 | T→G | 9.6% | intergenic (+105/+225) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,082,032 | G→A | 10.5% | P395L (CCG→CTG) | frvR ← | putative frv operon regulator; contains a PTS EIIA domain |
| RA | 4,088,923 | G→A | 7.8% | R117H (CGC→CAC) | rhaR → | transcriptional activator of rhaSR |
| RA | 4,133,261 | C→A | 5.3% | A268A (GCC→GCA) | frwC → | putative enzyme IIC component of PTS |
| RA | 4,151,394 | G→A | 8.9% | G115S (GGC→AGC) ‡ | fabR → | transcriptional repressor of fabA and fabB |
| RA | 4,151,395 | G→C | 9.0% | G115A (GGC→GCC) ‡ | fabR → | transcriptional repressor of fabA and fabB |
| RA | 4,165,449 | C→T | 30.7% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 30.7% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,173,307 | C→T | 24.0% | S712F (TCC→TTC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,177,142 | A→G | 62.9% | D622G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,192,224 | T→C | 6.8% | L124S (TTA→TCA) | zraS → | sensory histidine kinase in two‑component regulatory system with ZraR |
| RA | 4,285,970 | C→T | 6.4% | intergenic (+248/+283) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,315,882 | A→G | 12.3% | intergenic (‑324/+334) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,908 | T→C | 11.1% | intergenic (‑350/+308) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,336,238 | A→G | 7.1% | R302R (CGT→CGC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,241 | G→A | 7.4% | I301I (ATC→ATT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,363,262 | G→T | 10.7% | L264I (CTA→ATA) | yjeJ ← | uncharacterized protein |
| RA | 4,370,239 | G→A | 10.0% | D32D (GAC→GAT) | frdB ← | fumarate reductase (anaerobic), Fe‑S subunit |
| RA | 4,381,709 | G→A | 6.7% | V97M (GTG→ATG) | orn → | oligoribonuclease |
| RA | 4,399,063 | C→A | 7.2% | intergenic (+151/‑29) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,436,100 | A→G | 6.1% | E724E (GAA→GAG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,436,934 | C→T | 6.2% | G1002G (GGC→GGT) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,467,913 | A→C | 10.0% | A72A (GCT→GCG) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,467,949 | T→A | 6.0% | R60R (CGA→CGT) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,473,074 | T→C | 10.0% | K194R (AAA→AGA) | valS ← | valyl‑tRNA synthetase |
| RA | 4,479,271 | G→T | 6.2% | L204M (CTG→ATG) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,508,444 | C→A | 8.2% | P34H (CCT→CAT) ‡ | insA → | IS1 repressor TnpA |
| RA | 4,508,445 | T→C | 7.0% | P34P (CCT→CCC) ‡ | insA → | IS1 repressor TnpA |
| RA | 4,508,466 | A→G | 5.3% | L41L (CTA→CTG) | insA → | IS1 repressor TnpA |
| RA | 4,599,731 | G→A | 9.3% | A167A (GCG→GCA) | prfC → | peptide chain release factor RF‑3 |
| RA | 4,604,320 | T→C | 10.8% | intergenic (+243/+177) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,604,362 | G→A | 13.0% | intergenic (+285/+135) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,604,365 | T→C | 13.2% | intergenic (+288/+132) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,623,497 | G→T | 9.8% | H22Q (CAC→CAA) | yjjX ← | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 959602 | 959612 | 11 | 6 [4] | [0] 18 | ihfB/ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| * | * | ÷ | CP009273 | 2050062 | 2050299 | 238 | 6 [1] | [3] 6 | amn/yeeN | AMP nucleosidase/UPF0082 family protein |
| * | * | ÷ | CP009273 | 2208333 | 2209059 | 727 | 9 [4] | [4] 7 | [mlrA] | [mlrA] |
| * | * | ÷ | CP009273 | 2462840 | 2463098 | 259 | 6 [3] | [5] 6 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | CP009273 | 2463615 | 2463821 | 207 | 9 [4] | [5] 6 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | CP009273 | 3406947 | 3406991 | 45 | 10 [1] | [4] 6 | acrS/acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
| * | * | ÷ | CP009273 | 3797707 | 3797781 | 75 | 8 [4] | [4] 7 | waaS | lipopolysaccharide core biosynthesis protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 335746 = | 100 (1.710) | 22 (0.380) | 8/246 | NT | 18.2% | noncoding (279/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | CP009273 | 372778 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 360104 = | 38 (0.650) | 46 (0.790) | 19/248 | NT | 54.8% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 370386 = | NA (NA) | 11 (0.290) | 5/162 | NT | 22.1% | noncoding (1/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 372978 = | 43 (1.010) | intergenic (+211/+13) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 1203246 = | 31 (0.530) | 10 (0.200) | 6/216 | NT | 32.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 15 (0.290) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 29 (0.500) | 23 (0.450) | 10/216 | NT | 53.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 15 (0.290) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1972762 = | 36 (0.620) | 8 (0.140) | 3/248 | NT | 18.2% | intergenic (‑308/‑472) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 2283592 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||