breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence	position	mutation	annotation	gene	description
RA	2,399,955	C→A	E56* (GAA→TAA)	lrhA ←	transcriptional repressor of flagellar, motility and chemotaxis genes

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	2208292	2209119	828	35 [33]	[34] 35	mlrA	mlrA

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	74 (0.850)	101 (1.160)	81/274	0.1	57.7%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
*	?	CP009273	1203246 =	6 (0.070)	63 (0.820)	54/242	0.5	92.4%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	1205075 =	5 (0.060)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	CP009273	= 1203261	6 (0.070)	70 (0.910)	61/242	0.3	93.2%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	5 (0.060)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
*	?	CP009273	2721617 =	NA (NA)	51 (0.610)	37/260	2.0	NA	noncoding (927/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
	?	CP009273	2721695 =	NA (NA)					noncoding (849/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon