mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,183,097 | A→T | Q618L (CAG→CTG) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423748–3424234 | 3424527–3424238 | 5–780 | 19 [18] | [16] 21 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 932612 | 2 (0.030) | 94 (1.310) | 63/256 | 0.0 | 98.4% | coding (18/495 nt) | lrp | DNA‑binding transcriptional dual regulator Lrp |
| ? | NC_000913 | 933072 = | 1 (0.010) | coding (478/495 nt) | lrp | DNA‑binding transcriptional dual regulator Lrp | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 68 (0.970) | 47/250 | 0.2 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 2999468 = | 72 (1.000) | 49 (0.680) | 41/256 | 0.4 | 39.0% | coding (424/756 nt) | ygeR | LysM domain‑containing putative peptidase lipoprotein YgeR |
| ? | NC_000913 | = 3819586 | 82 (1.150) | coding (1585/1683 nt) | ligB | DNA ligase B | |||||