mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 710,218 | Δ411 bp | coding (19‑429/447 nt) | fur ← | DNA‑binding transcriptional dual regulator Fur |
| JC JC | 1,293,196 | IS5 (–) +4 bp | intergenic (‑274/‑328) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,580,932 | C→G | noncoding (85/90 nt) | ryhB ← | small regulatory RNA RyhB |
| MC JC | 3,815,859 | Δ82 bp | [rph] | [rph] | |
| RA | 4,188,953 | G→A | E1202K (GAA→AAA) | rpoC → | RNA polymerase subunit beta' |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 164493 | 164616 | 124 | 15 [11] | [8] 19 | [hrpB] | [hrpB] |
| * | * | ÷ | NC_000913 | 2074659 | 2074710 | 52 | 13 [11] | [10] 12 | flu/yeeR | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter/CP4‑44 prophage; inner membrane protein YeeR |
| * | * | ÷ | NC_000913 | 3423769–3424234 | 3424527–3424238 | 5–759 | 12 [10] | [10] 12 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 8 (0.170) | 43 (1.040) | 34/224 | 0.1 | 85.2% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 8 (0.190) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 8 (0.170) | 26 (0.630) | 21/224 | 0.7 | 77.6% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 8 (0.190) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||