mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 177,709 | G→T | 7.4% | L113L (CTG→CTT) | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 264,750 | Δ1 bp | 18.7% | intergenic (‑79/+250) | ykfA ← / ← perR | CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 264,754 | T→A | 17.1% | intergenic (‑83/+246) | ykfA ← / ← perR | CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 264,755 | A→T | 17.1% | intergenic (‑84/+245) | ykfA ← / ← perR | CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 370,475 | Δ1 bp | 16.7% | intergenic (+138/‑440) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,476 | T→G | 16.7% | intergenic (+139/‑439) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 1,076,947 | C→T | 9.5% | pseudogene (32/726 nt) | efeU → | ferrous iron permease (pseudogene) |
| RA | 1,514,291 | A→G | 18.2% | K336K (AAA→AAG) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| MC JC | 1,613,631 | Δ28 bp | 100% | coding (255‑282/435 nt) | marR → | transcriptional repressor of multiple antibiotic resistance |
| RA | 1,657,965 | G→A | 12.9% | A34T (GCC→ACC) | ynfH → | oxidoreductase, membrane subunit |
| RA | 2,209,283 | Δ1 bp | 7.7% | coding (673/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,288 | G→A | 11.8% | A223V (GCG→GTG) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,292 | G→A | 11.8% | L222L (CTG→TTG) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,294 | G→T | 12.0% | A221E (GCA→GAA) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,297 | A→G | 12.1% | V220A (GTG→GCG) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,300 | Δ1 bp | 12.0% | coding (656/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,300:1 | +A | 10.0% | coding (656/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,300:2 | +T | 10.0% | coding (656/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,300:3 | +T | 10.0% | coding (656/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,300:4 | +C | 10.0% | coding (656/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,300:5 | +C | 10.0% | coding (656/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,301 | Δ1 bp | 12.0% | coding (655/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,301,211 | G→C | 18.3% | A295G (GCG→GGG) | yojI ← | microcin J25 efflux pump, TolC‑dependent; fused ABC transporter permease and ATP‑binding components |
| RA | 2,306,318 | T→A | 100% | intergenic (‑90/‑245) | ompC ← / → micF | outer membrane porin protein C/sRNA antisense regulator affecting ompF expression, Hfq‑dependent |
| RA | 2,532,103 | G→C | 11.5% | C280W (TGC→TGG) | cysM ← | cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,655,675 | G→A | 7.1% | intergenic (‑185/+267) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,655,676 | C→A | 7.1% | intergenic (‑186/+266) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,655,682 | G→T | 13.1% | intergenic (‑192/+260) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,655,683 | A→C | 10.2% | intergenic (‑193/+259) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,660,211 | G→A | 10.6% | A332V (GCC→GTC) | hcaT ← | putative 3‑phenylpropionic transporter |
| RA | 2,938,895 | Δ1 bp | 10.0% | coding (307/807 nt) | tcdA ← | tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
| RA | 3,043,037 | C→T | 8.4% | V330V (GTG→GTA) | gcvT ← | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex |
| RA | 3,123,519 | A→C | 8.1% | intergenic (‑17/‑18) | yghO ← / → insH1 | pseudogene, DNA‑binding transcriptional regulator homology/IS5 transposase and trans‑activator |
| RA | 3,207,739 | A→C | 100% | D445A (GAT→GCT) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,459,849 | A→C | 10.8% | I79S (ATT→AGT) | bfr ← | bacterioferritin, iron storage and detoxification protein |
| RA | 3,528,794 | A→C | 100% | V145G (GTA→GGA) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
| RA | 4,228,094 | Δ1 bp | 5.9% | coding (533/2097 nt) | yjbH → | DUF940 family extracellular polysaccharide protein |
| RA | 4,288,761 | G→A | 16.6% | H141H (CAC→CAT) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,363,021 | G→T | 5.6% | intergenic (+42/+161) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,364,401 | T→A | 13.1% | intergenic (‑350/+45) | yjeJ ← / ← epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| RA | 4,364,406 | A→C | 9.5% | intergenic (‑355/+40) | yjeJ ← / ← epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| RA | 4,368,798 | C→A | 100% | intergenic (‑37/+26) | ampC ← / ← frdD | penicillin‑binding protein; beta‑lactamase, intrinsically weak/fumarate reductase (anaerobic), membrane anchor subunit |
| RA | 4,427,843 | A→T | 6.1% | E107V (GAA→GTA) | ytfI → | uncharacterized protein |
| RA | 4,609,235 | G→A | 7.9% | R397H (CGT→CAT) | deoA → | thymidine phosphorylase |
| RA | 4,618,844 | T→A | 32.6% | H499L (CAC→CTC) | yjjK ← | putative transporter subunit of ABC superfamily: ATP‑binding component |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 716402 | 716445 | 44 | 3 [0] | [2] 3 | ybfK/kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | CP009273 | 748308 | 748350 | 43 | 3 [2] | [2] 3 | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1899 = | 81 (2.110) | 8 (0.220) | 6/298 | NT | 11.1% | coding (1563/2463 nt) | thrA | Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| ? | CP009273 | 2042 = | 51 (1.400) | coding (1706/2463 nt) | thrA | Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
| * | ? | CP009273 | 6433 = | 73 (1.900) | 8 (0.220) | 5/296 | NT | 10.7% | coding (27/777 nt) | yaaA | peroxide resistance protein, lowers intracellular iron |
| ? | CP009273 | 6543 = | 65 (1.790) | coding (1417/1431 nt) | yaaJ | putative transporter | |||||
| * | ? | CP009273 | 18493 = | 61 (1.590) | 8 (0.210) | 6/304 | NT | 12.5% | coding (1005/1167 nt) | nhaA | sodium‑proton antiporter |
| ? | CP009273 | 18830 = | 53 (1.420) | coding (116/906 nt) | nhaR | transcriptional activator of nhaA | |||||
| * | ? | CP009273 | 65180 = | 55 (1.430) | 6 (0.170) | 5/292 | NT | 11.3% | coding (601/2352 nt) | polB | DNA polymerase II |
| ? | CP009273 | 65711 = | 43 (1.200) | coding (70/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | CP009273 | = 71557 | 43 (1.120) | 4 (0.110) | 4/302 | NT | 10.0% | coding (411/984 nt) | thiB | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer |
| ? | CP009273 | = 71662 | 31 (0.840) | coding (306/984 nt) | thiB | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer | |||||
| * | ? | CP009273 | 71874 = | 57 (1.480) | 6 (0.170) | 6/296 | NT | 10.1% | coding (94/984 nt) | thiB | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer |
| ? | CP009273 | 72027 = | 53 (1.460) | intergenic (‑60/+104) | thiB/sgrR | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer/transcriptional DNA‑binding transcriptional activator of sgrS sRNA | |||||
| * | ? | CP009273 | = 71882 | 43 (1.120) | 11 (0.300) | 7/296 | NT | 19.0% | coding (86/984 nt) | thiB | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer |
| ? | CP009273 | = 72017 | 53 (1.460) | intergenic (‑50/+114) | thiB/sgrR | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer/transcriptional DNA‑binding transcriptional activator of sgrS sRNA | |||||
| * | ? | CP009273 | 73084 = | 52 (1.350) | 5 (0.140) | 4/300 | NT | 9.2% | coding (703/1656 nt) | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| ? | CP009273 | 73401 = | 49 (1.330) | coding (386/1656 nt) | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA | |||||
| * | ? | CP009273 | 77122 = | 72 (1.870) | 8 (0.220) | 7/292 | NT | 11.3% | coding (230/1401 nt) | leuC | 3‑isopropylmalate dehydratase large subunit |
| ? | CP009273 | 77244 = | 59 (1.650) | coding (108/1401 nt) | leuC | 3‑isopropylmalate dehydratase large subunit | |||||
| * | ? | CP009273 | = 77191 | 63 (1.640) | 4 (0.110) | 4/300 | NT | 6.2% | coding (161/1401 nt) | leuC | 3‑isopropylmalate dehydratase large subunit |
| ? | CP009273 | = 77375 | 61 (1.660) | coding (1071/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent | |||||
| * | ? | CP009273 | = 96790 | 52 (1.350) | 11 (0.310) | 6/294 | NT | 17.9% | coding (660/1068 nt) | murG | N‑acetylglucosaminyl transferase |
| ? | CP009273 | = 96902 | 52 (1.440) | coding (772/1068 nt) | murG | N‑acetylglucosaminyl transferase | |||||
| * | ? | CP009273 | = 112279 | 38 (0.990) | 5 (0.130) | 4/308 | NT | 12.8% | coding (1308/1386 nt) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein |
| ? | CP009273 | = 112436 | 31 (0.820) | coding (1151/1386 nt) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein | |||||
| * | ? | CP009273 | = 113555 | 57 (1.480) | 6 (0.170) | 5/296 | NT | 10.3% | coding (32/1386 nt) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein |
| ? | CP009273 | = 113694 | 51 (1.410) | coding (343/441 nt) | ppdD | putative prepilin peptidase‑dependent pilin | |||||
| * | ? | CP009273 | 127834 = | 61 (1.590) | 4 (0.110) | 4/298 | NT | 7.6% | intergenic (‑87/‑268) | yacH/acnB | uncharacterized protein/bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| ? | CP009273 | 127989 = | 40 (1.100) | intergenic (‑242/‑113) | yacH/acnB | uncharacterized protein/bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase | |||||
| * | ? | CP009273 | 128164 = | 59 (1.530) | 4 (0.110) | 4/306 | NT | 6.5% | coding (63/2598 nt) | acnB | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| ? | CP009273 | 128299 = | 58 (1.550) | coding (198/2598 nt) | acnB | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase | |||||
| * | ? | CP009273 | 133621 = | 61 (1.590) | 4 (0.110) | 4/294 | NT | 7.7% | coding (52/1551 nt) | cueO | multicopper oxidase (laccase) |
| ? | CP009273 | 133824 = | 39 (1.080) | coding (255/1551 nt) | cueO | multicopper oxidase (laccase) | |||||
| * | ? | CP009273 | 147575 = | 73 (1.900) | 4 (0.110) | 4/296 | NT | 6.2% | coding (512/597 nt) | yadK | putative fimbrial‑like adhesin protein |
| ? | CP009273 | 147808 = | 52 (1.440) | coding (279/597 nt) | yadK | putative fimbrial‑like adhesin protein | |||||
| * | ? | CP009273 | = 154238 | 59 (1.530) | 4 (0.110) | 4/298 | NT | 6.6% | coding (1376/1398 nt) | pcnB | poly(A) polymerase |
| ? | CP009273 | = 154557 | 57 (1.560) | coding (1057/1398 nt) | pcnB | poly(A) polymerase | |||||
| * | ? | CP009273 | = 156954 | 67 (1.740) | 8 (0.220) | 6/302 | NT | 11.6% | coding (138/456 nt) | dksA | transcriptional regulator of rRNA transcription, DnaK suppressor protein |
| ? | CP009273 | = 157041 | 58 (1.570) | coding (51/456 nt) | dksA | transcriptional regulator of rRNA transcription, DnaK suppressor protein | |||||
| * | ? | CP009273 | 158933 = | 49 (1.270) | 13 (0.350) | 7/304 | NT | 17.1% | coding (342/2430 nt) | hrpB | putative ATP‑dependent helicase |
| ? | CP009273 | 159131 = | 79 (2.120) | coding (540/2430 nt) | hrpB | putative ATP‑dependent helicase | |||||
| * | ? | CP009273 | = 159805 | 43 (1.120) | 4 (0.110) | 4/298 | NT | 7.5% | coding (1214/2430 nt) | hrpB | putative ATP‑dependent helicase |
| ? | CP009273 | = 160166 | 58 (1.590) | coding (1575/2430 nt) | hrpB | putative ATP‑dependent helicase | |||||
| * | ? | CP009273 | 162050 = | 76 (1.980) | 25 (0.690) | 9/298 | NT | 24.6% | coding (834/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase |
| ? | CP009273 | 162330 = | 81 (2.220) | coding (1114/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase | |||||
| * | ? | CP009273 | 220899 = | NA (NA) | 10 (0.270) | 10/300 | NT | NA | noncoding (642/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 221423 = | NA (NA) | noncoding (1166/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 221066 = | 1 (0.030) | 13 (0.350) | 7/302 | NT | 93.1% | noncoding (809/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 2723620 | NA (NA) | noncoding (897/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 221397 = | NA (NA) | 7 (0.190) | 7/298 | NT | NA | noncoding (1140/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 221644 = | NA (NA) | noncoding (1387/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 239496 | 33 (0.860) | 20 (0.540) | 10/300 | NT | 31.1% | coding (295/2445 nt) | fadE | acyl coenzyme A dehydrogenase |
| ? | CP009273 | = 239679 | 57 (1.550) | coding (112/2445 nt) | fadE | acyl coenzyme A dehydrogenase | |||||
| * | ? | CP009273 | 256752 = | 29 (0.750) | 8 (0.220) | 4/292 | NT | 24.6% | coding (654/1104 nt) | proB | gamma‑glutamate kinase |
| ? | CP009273 | 257524 = | 22 (0.620) | coding (311/1254 nt) | proA | gamma‑glutamylphosphate reductase | |||||
| * | ? | CP009273 | = 270098 | NA (NA) | 20 (0.540) | 13/302 | NT | NA | noncoding (763/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 270197 | NA (NA) | noncoding (664/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 275525 = | 25 (0.650) | 5 (0.130) | 5/308 | NT | 23.5% | noncoding (117/768 nt) | IS1 | repeat region |
| ? | CP009273 | = 3576990 | 8 (0.210) | coding (148/276 nt) | insA | IS1 repressor TnpA | |||||
| * | ? | CP009273 | 311112 = | NA (NA) | 12 (0.340) | 8/288 | NT | NA | coding (111/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311338 = | NA (NA) | coding (41/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 311355 = | NA (NA) | 7 (0.190) | 5/298 | NT | NA | coding (58/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | 311423 = | NA (NA) | coding (126/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | = 354947 | 38 (0.990) | 14 (0.400) | 7/284 | NT | 29.7% | coding (438/660 nt) | cynT | carbonic anhydrase |
| ? | CP009273 | = 355075 | 32 (0.920) | coding (566/660 nt) | cynT | carbonic anhydrase | |||||
| * | ? | CP009273 | 356557 = | 29 (0.750) | 6 (0.160) | 4/302 | NT | 16.9% | coding (855/1155 nt) | cynX | putative cyanate transporter |
| ? | CP009273 | 356650 = | 31 (0.840) | coding (948/1155 nt) | cynX | putative cyanate transporter | |||||
| * | ? | CP009273 | = 359542 | 30 (0.780) | 7 (0.190) | 7/298 | NT | 17.0% | pseudogene (525/1125 nt) | lacZ | pseudogene, truncated |
| ? | CP009273 | = 359651 | 40 (1.100) | pseudogene (416/1125 nt) | lacZ | pseudogene, truncated | |||||
| * | ? | CP009273 | 360104 = | 9 (0.230) | 48 (1.250) | 36/314 | NT | 75.6% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | 22 (0.570) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 377054 = | NA (NA) | 10 (0.270) | 9/298 | NT | NA | coding (248/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | 377582 = | NA (NA) | coding (453/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | 394704 = | 35 (0.910) | 11 (0.300) | 6/296 | NT | 25.9% | coding (86/309 nt) | yaiY | DUF2755 family inner membrane protein |
| ? | CP009273 | 395096 = | 30 (0.830) | coding (48/213 nt) | yaiZ | DUF2754 family putative inner membrane protein | |||||
| * | ? | CP009273 | 424713 = | 29 (0.750) | 12 (0.330) | 9/294 | NT | 33.3% | coding (1611/1848 nt) | secD | SecYEG protein translocase auxillary subunit |
| ? | CP009273 | 424987 = | 21 (0.580) | coding (27/972 nt) | secF | SecYEG protein translocase auxillary subunit | |||||
| * | ? | CP009273 | = 472791 | 39 (1.010) | 5 (0.140) | 5/300 | NT | 12.9% | coding (1283/1551 nt) | ylaB | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | CP009273 | = 472983 | 30 (0.820) | coding (1091/1551 nt) | ylaB | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | CP009273 | = 486367 | 27 (0.700) | 5 (0.140) | 4/298 | NT | 15.0% | coding (30/378 nt) | ybaN | DUF454 family inner membrane protein |
| ? | CP009273 | = 487543 | 31 (0.850) | intergenic (+124/‑5) | apt/dnaX | adenine phosphoribosyltransferase/DNA polymerase III/DNA elongation factor III, tau and gamma subunits | |||||
| * | ? | CP009273 | = 665422 | 23 (0.600) | 4 (0.110) | 4/298 | NT | 11.5% | coding (607/642 nt) | nadD | nicotinic acid mononucleotide adenylyltransferase, NAD(P)‑dependent |
| ? | CP009273 | = 666176 | 40 (1.100) | coding (886/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| * | ? | CP009273 | = 740668 | 41 (1.070) | 4 (0.110) | 4/304 | NT | 10.3% | coding (48/735 nt) | ybgL | UPF0271 family protein |
| ? | CP009273 | = 740773 | 30 (0.810) | coding (153/735 nt) | ybgL | UPF0271 family protein | |||||
| * | ? | CP009273 | = 762237 | 32 (0.830) | 5 (0.140) | 5/292 | NT | 19.7% | coding (798/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| ? | CP009273 | = 762358 | 11 (0.310) | coding (919/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component | |||||
| * | ? | CP009273 | 771848 = | 32 (0.830) | 9 (0.250) | 6/298 | NT | 29.3% | coding (51/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| ? | CP009273 | 772068 = | 13 (0.360) | coding (271/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex | |||||
| * | ? | CP009273 | 814227 = | 33 (0.860) | 4 (0.110) | 4/294 | NT | 16.7% | coding (202/486 nt) | moaC | molybdopterin biosynthesis, protein C |
| ? | CP009273 | 814536 = | 9 (0.250) | coding (33/246 nt) | moaD | molybdopterin synthase, small subunit | |||||
| * | ? | CP009273 | 827767 = | NA (NA) | 5 (0.140) | 4/300 | NT | 25.0% | noncoding (23/98 nt) | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 827816 = | 15 (0.410) | noncoding (72/98 nt) | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 850003 | 39 (1.010) | 4 (0.110) | 4/292 | NT | 13.3% | coding (901/1119 nt) | ybiR | putative transporter |
| ? | CP009273 | = 851018 | 16 (0.450) | coding (183/921 nt) | ldtB | L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | CP009273 | 895130 = | NA (NA) | 12 (0.330) | 8/298 | NT | 25.5% | intergenic (+29/+170) | rlmC/artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine binding protein, periplasmic |
| ? | CP009273 | 895266 = | 35 (0.960) | intergenic (+165/+34) | rlmC/artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine binding protein, periplasmic | |||||
| * | ? | CP009273 | = 1098333 | 33 (0.860) | 8 (0.220) | 5/296 | NT | 20.0% | coding (320/651 nt) | csgD | csgBAC operon transcriptional regulator |
| ? | CP009273 | = 1098666 | 33 (0.910) | intergenic (‑14/‑741) | csgD/csgB | csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex | |||||
| * | ? | CP009273 | = 1120722 | 23 (0.600) | 9 (0.250) | 8/294 | NT | 26.7% | coding (61/1209 nt) | mdtH | multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| ? | CP009273 | = 1121068 | 28 (0.780) | coding (51/585 nt) | rimJ | ribosomal‑protein‑S5‑alanine N‑acetyltransferase | |||||
| * | ? | CP009273 | 1158375 = | 9 (0.230) | 5 (0.140) | 5/300 | NT | 28.9% | coding (282/642 nt) | lpoB | OM lipoprotein stimulator of MrcB transpeptidase |
| ? | CP009273 | 1158792 = | 16 (0.440) | coding (77/825 nt) | thiK | thiamine kinase | |||||
| * | ? | CP009273 | = 1203054 | 32 (0.830) | 7 (0.190) | 6/304 | NT | 14.1% | coding (98/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1204898 = | 54 (1.450) | pseudogene (178/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1203246 = | 6 (0.160) | 34 (0.980) | 29/282 | NT | 84.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 7 (0.200) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 6 (0.160) | 39 (1.130) | 31/282 | NT | 86.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 7 (0.200) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1235328 = | 38 (0.990) | 4 (0.110) | 4/294 | NT | 12.4% | coding (994/1071 nt) | dadX | alanine racemase, catabolic, PLP‑binding |
| ? | CP009273 | 1236074 = | 21 (0.580) | coding (1454/1737 nt) | cvrA | putative cation/proton antiporter | |||||
| * | ? | CP009273 | = 1280805 | 21 (0.550) | 6 (0.160) | 5/298 | NT | 20.0% | coding (211/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| ? | CP009273 | = 1280852 | 28 (0.770) | coding (258/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 | |||||
| * | ? | CP009273 | 1282930 = | 37 (0.960) | 6 (0.160) | 6/298 | NT | 17.9% | intergenic (‑146/+64) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr |
| ? | CP009273 | 1283010 = | 20 (0.550) | noncoding (69/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | CP009273 | = 1336344 | 31 (0.810) | 4 (0.110) | 4/300 | NT | 13.4% | coding (167/738 nt) | pyrF | orotidine‑5'‑phosphate decarboxylase |
| ? | CP009273 | = 1336657 | 22 (0.600) | coding (480/738 nt) | pyrF | orotidine‑5'‑phosphate decarboxylase | |||||
| * | ? | CP009273 | = 1381355 | 22 (0.570) | 25 (0.680) | 10/302 | NT | 61.6% | coding (379/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | CP009273 | = 1381505 | 10 (0.270) | coding (529/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
| * | ? | CP009273 | 1413126 = | 35 (0.910) | 43 (1.160) | 12/302 | NT | 56.0% | coding (199/489 nt) | sieB | Rac prophage; phage superinfection exclusion protein |
| ? | CP009273 | 1413206 = | 34 (0.920) | coding (279/489 nt) | sieB | Rac prophage; phage superinfection exclusion protein | |||||
| * | ? | CP009273 | 1444185 = | 29 (0.750) | 7 (0.190) | 7/298 | NT | 22.4% | coding (1422/2274 nt) | tynA | tyramine oxidase, copper‑requiring |
| ? | CP009273 | 1444646 = | 21 (0.580) | coding (961/2274 nt) | tynA | tyramine oxidase, copper‑requiring | |||||
| * | ? | CP009273 | 1444917 = | 13 (0.340) | 4 (0.110) | 4/294 | NT | 22.7% | coding (690/2274 nt) | tynA | tyramine oxidase, copper‑requiring |
| ? | CP009273 | 1445614 = | 15 (0.420) | intergenic (‑8/+240) | tynA/paaZ | tyramine oxidase, copper‑requiring/fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | = 1450888 | 20 (0.520) | 5 (0.140) | 5/290 | NT | 21.5% | coding (202/1071 nt) | paaE | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| ? | CP009273 | = 1451154 | 18 (0.510) | coding (468/1071 nt) | paaE | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component | |||||
| * | ? | CP009273 | 1456346 = | 40 (1.040) | 14 (0.390) | 10/290 | NT | 28.0% | coding (1197/1206 nt) | paaJ | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| ? | CP009273 | 1456480 = | 35 (0.990) | coding (99/1314 nt) | paaK | phenylacetyl‑CoA ligase | |||||
| * | ? | CP009273 | = 1519884 | 31 (0.810) | 4 (0.110) | 4/298 | NT | 8.8% | coding (354/1500 nt) | ansP | L‑asparagine transporter |
| ? | CP009273 | = 1520302 | 53 (1.450) | intergenic (‑65/‑202) | ansP/yncG | L‑asparagine transporter/glutathione S‑transferase homolog | |||||
| * | ? | CP009273 | 1577603 = | 25 (0.650) | 4 (0.100) | 4/312 | NT | 13.6% | coding (342/762 nt) | ydeO | UV‑inducible global regulator, EvgA‑, GadE‑dependent |
| ? | CP009273 | 1578335 = | 26 (0.680) | intergenic (‑119/+129) | safA/ydeP | two‑component system connector membrane protein, EvgSA to PhoQP/putative oxidoreductase | |||||
| * | ? | CP009273 | 1623330 = | 28 (0.730) | 4 (0.110) | 4/306 | NT | 15.6% | intergenic (+35/‑142) | rspR/ydfZ | transcriptional repressor for rspAB/selenoprotein, function unknown |
| ? | CP009273 | 1623608 = | 16 (0.430) | coding (137/204 nt) | ydfZ | selenoprotein, function unknown | |||||
| * | ? | CP009273 | 1635771 = | 68 (1.770) | 4 (0.110) | 4/300 | NT | 6.7% | coding (41/216 nt) | cspB | Qin prophage; cold shock protein |
| ? | CP009273 | 1635987 = | 47 (1.280) | intergenic (‑176/‑125) | cspB/cspF | Qin prophage; cold shock protein/Qin prophage; cold shock protein | |||||
| * | ? | CP009273 | = 1726230 | 24 (0.620) | 7 (0.190) | 6/294 | NT | 26.7% | coding (2887/4617 nt) | lhr | putative ATP‑dependent helicase |
| ? | CP009273 | = 1726315 | 16 (0.440) | coding (2972/4617 nt) | lhr | putative ATP‑dependent helicase | |||||
| * | ? | CP009273 | = 1730074 | 14 (0.360) | 4 (0.110) | 4/302 | NT | 22.9% | coding (440/582 nt) | sodB | superoxide dismutase, Fe |
| ? | CP009273 | = 1730330 | NA (NA) | intergenic (+114/+48) | sodB/ydhP | superoxide dismutase, Fe/putative transporter | |||||
| * | ? | CP009273 | = 1769591 | 16 (0.420) | 4 (0.110) | 4/302 | NT | 25.5% | coding (649/759 nt) | aroD | 3‑dehydroquinate dehydratase |
| ? | CP009273 | = 1769689 | 8 (0.220) | coding (747/759 nt) | aroD | 3‑dehydroquinate dehydratase | |||||
| * | ? | CP009273 | = 1775174 | 16 (0.420) | 6 (0.160) | 5/308 | NT | 26.8% | coding (517/939 nt) | ydiR | putative electron transfer flavoprotein, FAD‑binding subunit |
| ? | CP009273 | = 1775370 | 17 (0.450) | coding (713/939 nt) | ydiR | putative electron transfer flavoprotein, FAD‑binding subunit | |||||
| * | ? | CP009273 | = 1798348 | 29 (0.750) | 13 (0.360) | 6/294 | NT | 19.1% | pseudogene (574/1476 nt) | arpB | pseudogene, ankyrin repeats |
| ? | CP009273 | = 1798532 | 83 (2.310) | pseudogene (758/1476 nt) | arpB | pseudogene, ankyrin repeats | |||||
| * | ? | CP009273 | 1813583 = | 25 (0.650) | 5 (0.140) | 5/298 | NT | 19.7% | coding (122/843 nt) | chbR | repressor of chb operon for N,N'‑diacetylchitobiose utilization |
| ? | CP009273 | 1813704 = | 17 (0.470) | coding (1/843 nt) | chbR | repressor of chb operon for N,N'‑diacetylchitobiose utilization | |||||
| * | ? | CP009273 | = 1892761 | 30 (0.780) | 4 (0.110) | 4/304 | NT | 13.1% | coding (78/1599 nt) | yoaD | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production |
| ? | CP009273 | = 1892941 | 24 (0.640) | coding (258/1599 nt) | yoaD | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production | |||||
| * | ? | CP009273 | 1911910 = | 32 (0.830) | 4 (0.110) | 4/298 | NT | 13.9% | coding (144/2634 nt) | yebT | MCE domain protein |
| ? | CP009273 | 1912103 = | 19 (0.520) | coding (337/2634 nt) | yebT | MCE domain protein | |||||
| * | ? | CP009273 | 1912818 = | 29 (0.750) | 10 (0.270) | 6/298 | NT | 26.5% | coding (1052/2634 nt) | yebT | MCE domain protein |
| ? | CP009273 | 1913093 = | 28 (0.770) | coding (1327/2634 nt) | yebT | MCE domain protein | |||||
| * | ? | CP009273 | = 1940961 | 28 (0.730) | 4 (0.110) | 4/300 | NT | 11.5% | coding (454/603 nt) | yebB | DUF830 family protein |
| ? | CP009273 | = 1941644 | 35 (0.950) | intergenic (‑11/+24) | ruvC/yebC | component of RuvABC resolvasome, endonuclease/UPF0082 family protein | |||||
| * | ? | CP009273 | 1965850 = | 20 (0.520) | 12 (0.330) | 4/296 | NT | 40.8% | coding (1099/1662 nt) | tar | methyl‑accepting chemotaxis protein II |
| ? | CP009273 | 1965996 = | 16 (0.440) | coding (953/1662 nt) | tar | methyl‑accepting chemotaxis protein II | |||||
| * | ? | CP009273 | 1975789 = | 26 (0.680) | 6 (0.160) | 5/302 | NT | 21.4% | coding (80/801 nt) | otsB | trehalose‑6‑phosphate phosphatase, biosynthetic |
| ? | CP009273 | 1976245 = | 19 (0.510) | coding (777/987 nt) | araH | fused L‑arabinose transporter subunits of ABC superfamily: membrane components | |||||
| * | ? | CP009273 | = 1999222 | 27 (0.700) | 4 (0.110) | 4/300 | NT | 13.2% | coding (29/366 nt) | fliT | putative flagellar synthesis and assembly chaperone |
| ? | CP009273 | = 1999299 | 27 (0.740) | coding (106/366 nt) | fliT | putative flagellar synthesis and assembly chaperone | |||||
| * | ? | CP009273 | 2038723 = | 15 (0.390) | 8 (0.230) | 7/290 | NT | 37.3% | coding (305/7077 nt) | yeeJ | putative adhesin |
| ? | CP009273 | 2038836 = | 13 (0.370) | coding (418/7077 nt) | yeeJ | putative adhesin | |||||
| * | ? | CP009273 | 2072192 = | 32 (0.830) | 6 (0.160) | 4/300 | NT | 17.8% | intergenic (‑34/‑35) | yoeD/yoeF | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | CP009273 | 2072670 = | 25 (0.680) | coding (173/330 nt) | yeeX | UPF0265 family protein | |||||
| * | ? | CP009273 | = 2072973 | 27 (0.700) | 4 (0.110) | 4/306 | NT | 11.5% | intergenic (‑131/+41) | yeeX/yeeA | UPF0265 family protein/putative transporter, FUSC family inner membrane protein |
| ? | CP009273 | = 2073330 | 35 (0.930) | coding (743/1059 nt) | yeeA | putative transporter, FUSC family inner membrane protein | |||||
| * | ? | CP009273 | 2193886 = | 19 (0.490) | 14 (0.380) | 6/300 | NT | 42.3% | coding (129/3633 nt) | yehI | DUF4132 domain‑containing protein |
| ? | CP009273 | 2193944 = | 20 (0.540) | coding (187/3633 nt) | yehI | DUF4132 domain‑containing protein | |||||
| * | ? | CP009273 | 2204247 = | 30 (0.780) | 6 (0.170) | 4/294 | NT | 17.1% | pseudogene (1669/2001 nt) | yehQ | pseudogene |
| ? | CP009273 | 2204513 = | 30 (0.830) | pseudogene (1935/2001 nt) | yehQ | pseudogene | |||||
| * | ? | CP009273 | = 2209186 | 40 (1.040) | 16 (0.440) | 6/300 | NT | 33.3% | coding (51/108 nt) | yohO | putative membrane protein |
| ? | CP009273 | = 2209301 | 26 (0.710) | coding (655/732 nt) | yehW | inner membrane putative ABC superfamily transporter permease | |||||
| * | ? | CP009273 | = 2217990 | 30 (0.780) | 4 (0.110) | 4/302 | NT | 10.1% | coding (360/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase |
| ? | CP009273 | = 2218142 | 42 (1.140) | coding (208/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase | |||||
| * | ? | CP009273 | 2307152 = | 18 (0.470) | 4 (0.110) | 4/300 | NT | 16.3% | coding (186/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| ? | CP009273 | 2307249 = | 24 (0.650) | coding (283/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC | |||||
| * | ? | CP009273 | = 2310782 | 22 (0.570) | 4 (0.110) | 4/308 | NT | 18.8% | coding (2574/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| ? | CP009273 | = 2311055 | 13 (0.340) | coding (2301/2850 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
| * | ? | CP009273 | = 2416673 | 30 (0.780) | 6 (0.170) | 6/296 | NT | 16.2% | coding (346/891 nt) | yfcI | transposase_31 family protein |
| ? | CP009273 | = 2416766 | 34 (0.940) | coding (253/891 nt) | yfcI | transposase_31 family protein | |||||
| * | ? | CP009273 | = 2471834 | 30 (0.780) | 5 (0.140) | 5/292 | NT | 16.2% | coding (509/1338 nt) | dsdX | D‑serine transporter |
| ? | CP009273 | = 2472115 | 24 (0.670) | coding (790/1338 nt) | dsdX | D‑serine transporter | |||||
| * | ? | CP009273 | 2489882 = | 39 (1.010) | 6 (0.170) | 5/290 | NT | 16.7% | coding (759/921 nt) | lpxP | palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 2490290 = | 24 (0.680) | intergenic (+246/‑110) | lpxP/ypdK | palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase/inner membrane protein | |||||
| * | ? | CP009273 | = 2491587 | 23 (0.600) | 8 (0.220) | 5/292 | NT | 27.4% | coding (188/1239 nt) | alaC | valine‑pyruvate aminotransferase 3 |
| ? | CP009273 | = 2491794 | 21 (0.590) | intergenic (‑20/‑356) | alaC/ypdA | valine‑pyruvate aminotransferase 3/sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system | |||||
| * | ? | CP009273 | 2512596 = | 21 (0.550) | 7 (0.200) | 5/282 | NT | 28.7% | coding (305/393 nt) | yfeD | DUF1323 family putative DNA‑binding protein |
| ? | CP009273 | 2513176 = | 16 (0.460) | coding (976/1416 nt) | gltX | glutamyl‑tRNA synthetase | |||||
| * | ? | CP009273 | 2534351 = | 38 (0.990) | 4 (0.110) | 4/302 | NT | 11.5% | coding (688/876 nt) | cysW | sulfate/thiosulfate ABC transporter subunit |
| ? | CP009273 | 2534553 = | 25 (0.680) | coding (486/876 nt) | cysW | sulfate/thiosulfate ABC transporter subunit | |||||
| * | ? | CP009273 | = 2607496 | 32 (0.830) | 4 (0.110) | 4/310 | NT | 10.4% | coding (204/849 nt) | focB | putative formate transporter |
| ? | CP009273 | = 2608508 | 37 (0.980) | coding (733/1062 nt) | yfgO | putative UPF0118 family inner membrane permease | |||||
| * | ? | CP009273 | 2607606 = | 26 (0.680) | 4 (0.110) | 4/298 | NT | 15.8% | coding (314/849 nt) | focB | putative formate transporter |
| ? | CP009273 | 2608243 = | 18 (0.490) | coding (998/1062 nt) | yfgO | putative UPF0118 family inner membrane permease | |||||
| * | ? | CP009273 | = 2638679 | 13 (0.340) | 6 (0.160) | 5/298 | NT | 26.5% | coding (2006/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2638736 | 21 (0.580) | coding (1949/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
| * | ? | CP009273 | 2650540 = | 20 (0.520) | 4 (0.110) | 4/298 | NT | 12.3% | coding (1755/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU |
| ? | CP009273 | 2650772 = | 38 (1.040) | coding (1523/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU | |||||
| * | ? | CP009273 | 2676188 = | 43 (1.120) | 5 (0.140) | 4/296 | NT | 13.8% | intergenic (‑84/‑34) | yphG/yphH | DUF4380 domain‑containing TPR repeat protein/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 2676276 = | 22 (0.610) | coding (55/1194 nt) | yphH | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 2676758 = | 46 (1.200) | 4 (0.110) | 4/302 | NT | 9.4% | coding (537/1194 nt) | yphH | putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 2677317 = | 33 (0.890) | coding (1096/1194 nt) | yphH | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 2677543 = | 33 (0.860) | 4 (0.110) | 4/308 | NT | 14.7% | noncoding (68/98 nt) | RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 2677718 = | 14 (0.370) | coding (1149/1254 nt) | glyA | serine hydroxymethyltransferase | |||||
| * | ? | CP009273 | 2697456 = | 11 (0.290) | 7 (0.200) | 5/288 | NT | 31.0% | intergenic (‑34/+238) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) |
| ? | CP009273 | 2697550 = | 21 (0.600) | intergenic (‑128/+144) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) | |||||
| * | ? | CP009273 | = 2697468 | 8 (0.210) | 8 (0.230) | 4/288 | NT | 36.1% | intergenic (‑46/+226) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) |
| ? | CP009273 | = 2697536 | 21 (0.600) | intergenic (‑114/+158) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) | |||||
| * | ? | CP009273 | 2697552 = | 22 (0.570) | 9 (0.250) | 7/290 | NT | 26.3% | intergenic (‑130/+142) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) |
| ? | CP009273 | 2697894 = | 30 (0.850) | coding (775/975 nt) | lepB | leader peptidase (signal peptidase I) | |||||
| * | ? | CP009273 | = 2723534 | NA (NA) | 5 (0.140) | 5/302 | NT | NA | noncoding (983/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | = 2723832 | NA (NA) | noncoding (685/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 2821800 | 47 (1.220) | 10 (0.270) | 8/300 | NT | 22.8% | coding (705/780 nt) | srlD | sorbitol‑6‑phosphate dehydrogenase |
| ? | CP009273 | = 2822162 | 23 (0.630) | coding (183/360 nt) | srlM | sorbitol‑responsive srl operon transcriptional activator | |||||
| * | ? | CP009273 | = 2844390 | 30 (0.780) | 10 (0.260) | 5/310 | NT | 28.7% | coding (31/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases |
| ? | CP009273 | = 2844630 | 20 (0.530) | coding (271/873 nt) | hypB | GTP hydrolase involved in nickel liganding into hydrogenases | |||||
| * | ? | CP009273 | = 2877132 | 42 (1.090) | 6 (0.160) | 4/298 | NT | 14.1% | coding (366/1509 nt) | casA | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| ? | CP009273 | = 2877239 | 33 (0.900) | coding (259/1509 nt) | casA | CRISP RNA (crRNA) containing Cascade antiviral complex protein | |||||
| * | ? | CP009273 | = 2893788 | 37 (0.960) | 5 (0.140) | 4/300 | NT | 14.6% | intergenic (‑156/‑163) | ygcW/yqcE | putative dehydrogenase/MFS transporter family protein |
| ? | CP009273 | = 2893942 | 23 (0.630) | intergenic (‑310/‑9) | ygcW/yqcE | putative dehydrogenase/MFS transporter family protein | |||||
| * | ? | CP009273 | = 2895803 | 27 (0.700) | 5 (0.140) | 5/298 | NT | 16.5% | coding (549/1479 nt) | ygcE | putative kinase |
| ? | CP009273 | = 2896198 | 25 (0.690) | coding (944/1479 nt) | ygcE | putative kinase | |||||
| * | ? | CP009273 | = 2919455 | 51 (1.330) | 9 (0.250) | 5/296 | NT | 15.6% | coding (749/849 nt) | queF | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| ? | CP009273 | = 2919562 | 49 (1.350) | intergenic (+7/‑105) | queF/ygdH | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent)/UPF0717 family protein | |||||
| * | ? | CP009273 | = 2934061 | 54 (1.400) | 7 (0.190) | 6/300 | NT | 13.8% | coding (542/1101 nt) | rlmM | 23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | CP009273 | = 2934240 | 36 (0.980) | coding (363/1101 nt) | rlmM | 23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | = 2936456 | 37 (0.960) | 4 (0.110) | 4/296 | NT | 9.9% | coding (49/228 nt) | ygdI | DUF903 family verified lipoprotein |
| ? | CP009273 | = 2936827 | 38 (1.050) | coding (132/1206 nt) | csdA | cysteine sulfinate desulfinase | |||||
| * | ? | CP009273 | = 2946067 | 42 (1.090) | 4 (0.110) | 4/300 | NT | 10.4% | coding (3296/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit |
| ? | CP009273 | = 2946203 | 29 (0.790) | coding (3160/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit | |||||
| * | ? | CP009273 | 2966073 = | 36 (0.940) | 11 (0.300) | 7/296 | NT | 25.3% | coding (1149/1194 nt) | lplT | lysophospholipid transporter |
| ? | CP009273 | 2966170 = | 31 (0.860) | coding (1052/1194 nt) | lplT | lysophospholipid transporter | |||||
| * | ? | CP009273 | 2985582 = | 39 (1.010) | 4 (0.110) | 4/298 | NT | 6.2% | coding (130/1377 nt) | ygeH | putative transcriptional regulator |
| ? | CP009273 | 2985987 = | 83 (2.280) | coding (535/1377 nt) | ygeH | putative transcriptional regulator | |||||
| * | ? | CP009273 | = 3038465 | NA (NA) | 4 (0.110) | 4/296 | NT | 10.8% | intergenic (+5/+52) | bglA/ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| ? | CP009273 | = 3038635 | 33 (0.910) | coding (626/744 nt) | ygfF | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain | |||||
| * | ? | CP009273 | = 3098695 | 25 (0.650) | 4 (0.110) | 4/296 | NT | 14.4% | coding (904/1080 nt) | mltC | membrane‑bound lytic murein transglycosylase C |
| ? | CP009273 | = 3098817 | 24 (0.660) | coding (1026/1080 nt) | mltC | membrane‑bound lytic murein transglycosylase C | |||||
| * | ? | CP009273 | 3109143 = | 51 (1.330) | 9 (0.250) | 8/292 | NT | 18.7% | coding (3329/4563 nt) | yghJ | DUF4092 family putative lipoprotein peptidase |
| ? | CP009273 | 3109444 = | 31 (0.870) | coding (3028/4563 nt) | yghJ | DUF4092 family putative lipoprotein peptidase | |||||
| * | ? | CP009273 | = 3122383 | 72 (1.870) | 6 (0.170) | 5/292 | NT | 8.3% | coding (753/765 nt) | glcC | glycolate‑inducible glc operon transcriptional repressor; autorepressor |
| ? | CP009273 | = 3122500 | 66 (1.850) | pseudogene (1003/1101 nt) | yghO | pseudogene, DNA‑binding transcriptional regulator homology | |||||
| * | ? | CP009273 | = 3128772 | 24 (0.620) | 13 (0.360) | 6/296 | NT | 35.3% | coding (959/1500 nt) | pitB | phosphate transporter |
| ? | CP009273 | = 3128845 | 25 (0.690) | coding (886/1500 nt) | pitB | phosphate transporter | |||||
| * | ? | CP009273 | = 3162513 | 28 (0.730) | 8 (0.220) | 7/298 | NT | 23.7% | coding (78/483 nt) | ygiV | transcriptional repressor for mcbR biofilm gene |
| ? | CP009273 | = 3162709 | 25 (0.690) | coding (327/393 nt) | ygiW | hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein | |||||
| * | ? | CP009273 | = 3164112 | 36 (0.940) | 8 (0.220) | 5/296 | NT | 16.9% | coding (270/1350 nt) | qseC | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
| ? | CP009273 | = 3164253 | 45 (1.240) | coding (411/1350 nt) | qseC | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB | |||||
| * | ? | CP009273 | = 3180784 | NA (NA) | 14 (0.370) | 13/312 | NT | 7.7% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | = 3651934 | 169 (4.400) | coding (209/528 nt) | gadE | gad regulon transcriptional activator | |||||
| * | ? | CP009273 | = 3213605 | 44 (1.140) | 15 (0.420) | 8/294 | NT | 23.0% | coding (753/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| ? | CP009273 | = 3213757 | 59 (1.640) | coding (905/1380 nt) | patA | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent | |||||
| * | ? | CP009273 | = 3219548 | 57 (1.480) | 4 (0.110) | 4/288 | NT | 8.9% | intergenic (+18/‑45) | ebgC/ygjI | evolved beta‑D‑galactosidase, beta subunit; cupin superfamily/putative transporter |
| ? | CP009273 | = 3219644 | 30 (0.850) | coding (52/1434 nt) | ygjI | putative transporter | |||||
| * | ? | CP009273 | = 3243385 | 32 (0.830) | 4 (0.110) | 4/306 | NT | 10.6% | coding (344/405 nt) | yqjE | DUF1469 family inner membrane protein |
| ? | CP009273 | = 3243599 | 36 (0.960) | coding (164/300 nt) | yqjK | uncharacterized protein | |||||
| * | ? | CP009273 | 3248600 = | NA (NA) | 5 (0.140) | 5/294 | NT | 10.9% | noncoding (25/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 3248653 = | 41 (1.140) | noncoding (78/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | = 3299162 | 43 (1.120) | 4 (0.110) | 4/300 | NT | 7.5% | coding (15/1245 nt) | mtr | tryptophan transporter of high affinity |
| ? | CP009273 | = 3299337 | 58 (1.580) | coding (1883/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||
| * | ? | CP009273 | 3300667 = | 50 (1.300) | 4 (0.110) | 4/294 | NT | 9.0% | coding (553/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | CP009273 | 3300771 = | 34 (0.940) | coding (449/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||
| * | ? | CP009273 | 3316282 = | 40 (1.040) | 7 (0.190) | 5/300 | NT | 16.2% | coding (1148/1338 nt) | glmM | phosphoglucosamine mutase |
| ? | CP009273 | 3316507 = | 34 (0.930) | coding (923/1338 nt) | glmM | phosphoglucosamine mutase | |||||
| * | ? | CP009273 | = 3317451 | 22 (0.570) | 6 (0.170) | 5/296 | NT | 22.3% | coding (820/849 nt) | folP | 7,8‑dihydropteroate synthase |
| ? | CP009273 | = 3317791 | 21 (0.580) | coding (480/849 nt) | folP | 7,8‑dihydropteroate synthase | |||||
| * | ? | CP009273 | = 3363878 | 57 (1.480) | 8 (0.220) | 5/298 | NT | 14.5% | coding (518/690 nt) | nanE | putative N‑acetylmannosamine‑6‑P epimerase |
| ? | CP009273 | = 3363990 | 40 (1.100) | coding (406/690 nt) | nanE | putative N‑acetylmannosamine‑6‑P epimerase | |||||
| * | ? | CP009273 | 3376205 = | 21 (0.550) | 4 (0.110) | 4/298 | NT | 12.1% | coding (647/1068 nt) | degS | serine endoprotease, periplasmic |
| ? | CP009273 | 3376739 = | 38 (1.040) | coding (889/939 nt) | mdh | malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | CP009273 | = 3387786 | 31 (0.810) | 6 (0.160) | 6/306 | NT | 14.8% | coding (1832/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| ? | CP009273 | = 3388496 | 39 (1.040) | coding (1122/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein | |||||
| * | ? | CP009273 | = 3395799 | 54 (1.400) | 12 (0.340) | 6/290 | NT | 22.0% | coding (893/1941 nt) | csrD | targeting factor for csrBC sRNA degradation |
| ? | CP009273 | = 3396096 | 35 (0.990) | coding (596/1941 nt) | csrD | targeting factor for csrBC sRNA degradation | |||||
| * | ? | CP009273 | 3413250 = | 21 (0.550) | 13 (0.370) | 9/286 | NT | 35.1% | pseudogene (785/960 nt) | yhdW | pseudogene, amino‑acid transporter homology;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| ? | CP009273 | 3413579 = | 29 (0.830) | coding (87/1182 nt) | yhdX | putative amino‑acid transporter subunit | |||||
| * | ? | CP009273 | = 3419054 | NA (NA) | 4 (0.110) | 4/298 | NT | 10.5% | noncoding (1089/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| ? | CP009273 | = 3420250 | 36 (0.940) | intergenic (‑108/+67) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | CP009273 | 3427751 = | 31 (0.810) | 9 (0.250) | 5/300 | NT | 21.0% | coding (179/948 nt) | fmt | 10‑formyltetrahydrofolate:L‑methionyl‑tRNA(fMet) N‑formyltransferase |
| ? | CP009273 | 3428140 = | 38 (1.030) | coding (568/948 nt) | fmt | 10‑formyltetrahydrofolate:L‑methionyl‑tRNA(fMet) N‑formyltransferase | |||||
| * | ? | CP009273 | 3431091 = | 33 (0.860) | 4 (0.110) | 4/298 | NT | 10.6% | coding (1215/1377 nt) | trkA | NAD‑binding component of TrK potassium transporter |
| ? | CP009273 | 3431325 = | 36 (0.990) | intergenic (+72/‑58) | trkA/mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance | |||||
| * | ? | CP009273 | 3472275 = | 36 (0.940) | 4 (0.110) | 4/296 | NT | 11.6% | coding (1692/1806 nt) | kefB | potassium:proton antiporter |
| ? | CP009273 | 3472365 = | 27 (0.750) | coding (1602/1806 nt) | kefB | potassium:proton antiporter | |||||
| * | ? | CP009273 | 3476232 = | 36 (0.940) | 7 (0.190) | 5/306 | NT | 17.3% | coding (1585/1914 nt) | yheS | putative transporter subunit of ABC superfamily: ATP‑binding component |
| ? | CP009273 | 3477029 = | 32 (0.850) | coding (469/1023 nt) | yheT | UPF0017 family putative hydrolase | |||||
| * | ? | CP009273 | = 3498992 | 65 (1.690) | 4 (0.110) | 4/306 | NT | 7.0% | coding (388/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | CP009273 | = 3499068 | 43 (1.150) | coding (312/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | CP009273 | = 3515028 | 32 (0.830) | 24 (0.660) | 10/296 | NT | 44.8% | coding (304/540 nt) | hofN | DNA catabolic putative fimbrial assembly protein |
| ? | CP009273 | = 3515380 | 29 (0.800) | coding (731/780 nt) | hofM | DNA catabolic putative pilus assembly protein | |||||
| * | ? | CP009273 | 3536271 = | 38 (0.990) | 4 (0.110) | 4/298 | NT | 10.4% | coding (185/237 nt) | feoC | putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 3536682 = | 33 (0.900) | coding (157/879 nt) | yhgA | transposase_31 family protein | |||||
| * | ? | CP009273 | = 3541372 | NA (NA) | 6 (0.160) | 6/302 | NT | 12.8% | coding (2058/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
| ? | CP009273 | = 3541698 | 41 (1.110) | coding (1732/2085 nt) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) | |||||
| * | ? | CP009273 | 3564632 = | 44 (1.140) | 9 (0.250) | 6/300 | NT | 17.3% | coding (48/1974 nt) | glgX | glycogen debranching enzyme |
| ? | CP009273 | 3564798 = | 44 (1.200) | coding (2065/2187 nt) | glgB | 1,4‑alpha‑glucan branching enzyme | |||||
| * | ? | CP009273 | = 3581795 | 93 (2.420) | 12 (0.340) | 5/290 | NT | 13.6% | coding (746/1071 nt) | ugpC | glycerol‑3‑phosphate transporter subunit |
| ? | CP009273 | = 3582569 | 67 (1.890) | coding (819/846 nt) | ugpE | glycerol‑3‑phosphate transporter subunit | |||||
| * | ? | CP009273 | = 3609842 | 65 (1.690) | 5 (0.130) | 5/304 | NT | 7.6% | coding (301/834 nt) | nikC | nickel transporter subunit |
| ? | CP009273 | = 3610234 | 58 (1.560) | coding (693/834 nt) | nikC | nickel transporter subunit | |||||
| * | ? | CP009273 | 3613426 = | NA (NA) | 7 (0.200) | 7/286 | NT | 100% | coding (875/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3613850 = | 0 (0.000) | coding (1299/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3614119 = | NA (NA) | 12 (0.330) | 6/298 | NT | 24.0% | coding (1568/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614516 = | 40 (1.040) | coding (1965/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | 3618443 = | 70 (1.820) | 5 (0.140) | 3/296 | NT | 7.4% | coding (706/1137 nt) | yhhI | putative transposase |
| ? | CP009273 | 3618699 = | 60 (1.660) | coding (962/1137 nt) | yhhI | putative transposase | |||||
| * | ? | CP009273 | = 3629398 | 79 (2.060) | 6 (0.160) | 6/302 | NT | 9.3% | intergenic (+145/+170) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| ? | CP009273 | = 3629559 | 41 (1.110) | intergenic (+306/+9) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase | |||||
| * | ? | CP009273 | 3631948 = | 52 (1.350) | 5 (0.140) | 4/302 | NT | 9.5% | coding (947/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer |
| ? | CP009273 | 3632171 = | 45 (1.220) | coding (1170/1500 nt) | pitA | phosphate transporter, low‑affinity; tellurite importer | |||||
| * | ? | CP009273 | = 3641005 | 62 (1.610) | 6 (0.160) | 6/302 | NT | 8.5% | coding (1347/1353 nt) | gor | glutathione oxidoreductase |
| ? | CP009273 | = 3641218 | 69 (1.870) | intergenic (‑70/‑205) | dinQ/agrA | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/Inactive antisense sRNA | |||||
| * | ? | CP009273 | 3644618 = | 14 (0.360) | 7 (0.190) | 6/300 | NT | 11.9% | intergenic (+596/‑33) | arsC/yhiS | arsenate reductase/pseudogene |
| ? | CP009273 | 3644734 = | 90 (2.450) | pseudogene (84/741 nt) | yhiS | pseudogene | |||||
| * | ? | CP009273 | = 3667499 | 55 (1.430) | 17 (0.470) | 7/294 | NT | 27.5% | coding (778/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter |
| ? | CP009273 | = 3667663 | 38 (1.060) | coding (942/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter | |||||
| * | ? | CP009273 | = 3691980 | 46 (1.200) | 8 (0.210) | 6/304 | NT | 14.7% | coding (407/1680 nt) | bcsG | DUF3260 family inner membrane protein associated with cellulose production |
| ? | CP009273 | = 3692345 | 48 (1.290) | coding (772/1680 nt) | bcsG | DUF3260 family inner membrane protein associated with cellulose production | |||||
| * | ? | CP009273 | 3697827 = | 45 (1.170) | 23 (0.630) | 7/298 | NT | 36.9% | coding (295/903 nt) | dppC | dipeptide/heme transporter |
| ? | CP009273 | 3698091 = | 36 (0.990) | coding (31/903 nt) | dppC | dipeptide/heme transporter | |||||
| * | ? | CP009273 | = 3714984 | 70 (1.820) | 7 (0.190) | 4/298 | NT | 11.0% | coding (427/852 nt) | insK | IS150 transposase B |
| ? | CP009273 | = 3715491 | 47 (1.290) | intergenic (+26/+197) | sokA/glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit | |||||
| * | ? | CP009273 | = 3724381 | 103 (2.680) | 4 (0.110) | 4/296 | NT | 5.5% | intergenic (‑256/‑110) | xylA/xylF | D‑xylose isomerase/D‑xylose transporter subunit |
| ? | CP009273 | = 3724865 | 40 (1.100) | coding (375/993 nt) | xylF | D‑xylose transporter subunit | |||||
| * | ? | CP009273 | 3735261 = | 44 (1.140) | 11 (0.310) | 7/288 | NT | 21.9% | coding (632/849 nt) | yiaJ | transcriptional repressor of yiaK‑S operon |
| ? | CP009273 | 3735587 = | 38 (1.080) | coding (306/849 nt) | yiaJ | transcriptional repressor of yiaK‑S operon | |||||
| * | ? | CP009273 | 3740155 = | 64 (1.670) | 8 (0.220) | 6/296 | NT | 12.1% | coding (702/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein |
| ? | CP009273 | 3740245 = | 56 (1.550) | coding (792/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein | |||||
| * | ? | CP009273 | 3752711 = | 54 (1.400) | 5 (0.140) | 5/298 | NT | 10.2% | coding (511/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor |
| ? | CP009273 | 3752978 = | 37 (1.010) | coding (244/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor | |||||
| * | ? | CP009273 | 3771292 = | 44 (1.140) | 4 (0.110) | 4/308 | NT | 7.7% | coding (534/1656 nt) | lldP | L‑lactate permease |
| ? | CP009273 | 3771695 = | 53 (1.410) | coding (937/1656 nt) | lldP | L‑lactate permease | |||||
| * | ? | CP009273 | 3780388 = | 58 (1.510) | 5 (0.140) | 4/300 | NT | 8.5% | coding (191/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | CP009273 | 3780587 = | 52 (1.420) | coding (390/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | CP009273 | = 3815901 | 38 (0.990) | 7 (0.190) | 6/302 | NT | 12.3% | coding (142/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | CP009273 | = 3816627 | 63 (1.700) | coding (868/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
| * | ? | CP009273 | 3824659 = | 40 (1.040) | 4 (0.110) | 4/300 | NT | 10.4% | coding (843/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | CP009273 | 3824972 = | 31 (0.840) | coding (1156/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein | |||||
| * | ? | CP009273 | = 3840748 | 39 (1.010) | 15 (0.410) | 8/300 | NT | 30.8% | coding (1237/1320 nt) | uhpC | membrane protein regulates uhpT expression |
| ? | CP009273 | = 3840859 | 30 (0.820) | coding (1126/1320 nt) | uhpC | membrane protein regulates uhpT expression | |||||
| * | ? | CP009273 | = 3849876 | 53 (1.380) | 15 (0.410) | 7/300 | NT | 23.5% | coding (102/450 nt) | yidI | inner membrane protein |
| ? | CP009273 | = 3849974 | 47 (1.280) | coding (200/450 nt) | yidI | inner membrane protein | |||||
| * | ? | CP009273 | = 3894523 | 34 (0.880) | 4 (0.110) | 4/294 | NT | 10.1% | coding (1058/1617 nt) | bglH | carbohydrate‑specific outer membrane porin, cryptic |
| ? | CP009273 | = 3894651 | 39 (1.080) | coding (930/1617 nt) | bglH | carbohydrate‑specific outer membrane porin, cryptic | |||||
| * | ? | CP009273 | = 3913891 | 18 (0.470) | 7 (0.190) | 6/304 | NT | 23.2% | coding (358/471 nt) | atpF | F0 sector of membrane‑bound ATP synthase, subunit b |
| ? | CP009273 | = 3914106 | 29 (0.780) | coding (143/471 nt) | atpF | F0 sector of membrane‑bound ATP synthase, subunit b | |||||
| * | ? | CP009273 | 3919420 = | 47 (1.220) | 6 (0.160) | 4/300 | NT | 13.3% | coding (396/444 nt) | mioC | FMN‑binding protein MioC |
| ? | CP009273 | 3919632 = | 33 (0.900) | coding (184/444 nt) | mioC | FMN‑binding protein MioC | |||||
| * | ? | CP009273 | = 3920304 | 21 (0.550) | 5 (0.140) | 5/292 | NT | 17.1% | coding (60/459 nt) | asnC | transcriptional activator of asnA; autorepressor |
| ? | CP009273 | = 3921151 | 29 (0.810) | coding (637/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | CP009273 | 3949028 = | 58 (1.510) | 14 (0.380) | 7/298 | NT | 24.1% | coding (338/1545 nt) | ilvA | L‑threonine dehydratase, biosynthetic; also known as threonine deaminase |
| ? | CP009273 | 3949257 = | 33 (0.900) | coding (567/1545 nt) | ilvA | L‑threonine dehydratase, biosynthetic; also known as threonine deaminase | |||||
| * | ? | CP009273 | 3962895 = | 42 (1.090) | 4 (0.110) | 4/296 | NT | 9.6% | coding (505/1047 nt) | wzzE | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| ? | CP009273 | 3963028 = | 36 (0.990) | coding (638/1047 nt) | wzzE | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein | |||||
| * | ? | CP009273 | 3967939 = | 33 (0.860) | 4 (0.110) | 4/300 | NT | 10.1% | coding (113/675 nt) | wecD | TDP‑fucosamine acetyltransferase |
| ? | CP009273 | 3968052 = | 40 (1.090) | coding (226/675 nt) | wecD | TDP‑fucosamine acetyltransferase | |||||
| * | ? | CP009273 | 3979708 = | 75 (1.950) | 6 (0.170) | 4/296 | NT | 9.7% | intergenic (‑341/‑84) | aslA/glmZ | putative Ser‑type periplasmic non‑aryl sulfatase/sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | CP009273 | 3980211 = | 41 (1.130) | coding (1032/1197 nt) | hemY | putative protoheme IX synthesis protein | |||||
| * | ? | CP009273 | 3993510 = | NA (NA) | 5 (0.140) | 4/290 | NT | 8.1% | noncoding (1/103 nt) | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3993613 = | 57 (1.590) | intergenic (+108/+39) | uvrD/yigE | DNA‑dependent ATPase I and helicase II/DUF2233 family protein | |||||
| * | ? | CP009273 | = 4027462 | 74 (1.930) | 15 (0.410) | 7/296 | NT | 19.0% | coding (958/1452 nt) | trkH | potassium transporter |
| ? | CP009273 | = 4027532 | 58 (1.600) | coding (1028/1452 nt) | trkH | potassium transporter | |||||
| * | ? | CP009273 | 4053671 = | 28 (0.730) | 4 (0.110) | 4/302 | NT | 11.6% | intergenic (+81/‑136) | typA/yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 4053920 = | 34 (0.920) | coding (114/711 nt) | yihL | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 4055568 = | 92 (2.390) | 24 (0.660) | 4/296 | NT | 30.2% | intergenic (+63/‑39) | yihM/yihN | putative sugar phosphate isomerase/MFS transporter family protein |
| ? | CP009273 | 4056112 = | 24 (0.660) | coding (506/1266 nt) | yihN | MFS transporter family protein | |||||
| * | ? | CP009273 | = 4061989 | 58 (1.510) | 5 (0.140) | 4/290 | NT | 8.0% | coding (648/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | = 4062083 | 61 (1.720) | coding (554/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | CP009273 | 4062210 = | 57 (1.480) | 5 (0.140) | 5/300 | NT | 7.1% | coding (427/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4063124 = | 77 (2.100) | coding (638/927 nt) | yihR | mutarotase superfamily protein, YihR family | |||||
| * | ? | CP009273 | = 4075550 | 48 (1.250) | 7 (0.190) | 5/298 | NT | 12.9% | coding (570/903 nt) | fdoH | formate dehydrogenase‑O, Fe‑S subunit |
| ? | CP009273 | = 4076014 | 49 (1.340) | coding (106/903 nt) | fdoH | formate dehydrogenase‑O, Fe‑S subunit | |||||
| * | ? | CP009273 | 4153680 = | 29 (0.750) | 6 (0.170) | 5/296 | NT | 16.4% | coding (114/1845 nt) | btuB | vitamin B12/cobalamin outer membrane transporter |
| ? | CP009273 | 4153768 = | 34 (0.940) | coding (202/1845 nt) | btuB | vitamin B12/cobalamin outer membrane transporter | |||||
| * | ? | CP009273 | 4154285 = | 42 (1.090) | 7 (0.200) | 6/292 | NT | 17.3% | coding (719/1845 nt) | btuB | vitamin B12/cobalamin outer membrane transporter |
| ? | CP009273 | 4154443 = | 28 (0.780) | coding (877/1845 nt) | btuB | vitamin B12/cobalamin outer membrane transporter | |||||
| * | ? | CP009273 | 4161841 = | 47 (1.220) | 5 (0.140) | 5/290 | NT | 10.3% | intergenic (+157/‑144) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | CP009273 | 4162088 = | 44 (1.240) | coding (104/1029 nt) | murB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | CP009273 | = 4173774 | 40 (1.040) | 7 (0.190) | 5/294 | NT | 17.8% | coding (2602/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | CP009273 | = 4174600 | 27 (0.750) | coding (3428/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
| * | ? | CP009273 | = 4204724 | 31 (0.810) | 10 (0.280) | 6/292 | NT | 22.3% | coding (517/930 nt) | metA | homoserine O‑transsuccinylase |
| ? | CP009273 | = 4204915 | 41 (1.150) | coding (708/930 nt) | metA | homoserine O‑transsuccinylase | |||||
| * | ? | CP009273 | 4215816 = | 60 (1.560) | 5 (0.130) | 5/304 | NT | 7.3% | coding (2061/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | CP009273 | 4216935 = | 69 (1.850) | coding (3180/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | CP009273 | 4221604 = | 72 (1.870) | 9 (0.240) | 5/304 | NT | 13.0% | intergenic (‑45/+208) | yjbD/lysC | DUF3811 family protein/lysine‑sensitive aspartokinase 3 |
| ? | CP009273 | 4221822 = | 51 (1.370) | coding (1340/1350 nt) | lysC | lysine‑sensitive aspartokinase 3 | |||||
| * | ? | CP009273 | 4221838 = | 53 (1.380) | 11 (0.300) | 8/300 | NT | 14.8% | coding (1324/1350 nt) | lysC | lysine‑sensitive aspartokinase 3 |
| ? | CP009273 | 4222227 = | 76 (2.070) | coding (935/1350 nt) | lysC | lysine‑sensitive aspartokinase 3 | |||||
| * | ? | CP009273 | 4222256 = | 77 (2.000) | 10 (0.270) | 9/304 | NT | 11.7% | coding (906/1350 nt) | lysC | lysine‑sensitive aspartokinase 3 |
| ? | CP009273 | 4222417 = | 76 (2.040) | coding (745/1350 nt) | lysC | lysine‑sensitive aspartokinase 3 | |||||
| * | ? | CP009273 | 4226464 = | 49 (1.270) | 6 (0.160) | 6/298 | NT | 14.5% | coding (275/639 nt) | yjbF | extracellular polysaccharide production lipoprotein |
| ? | CP009273 | 4226626 = | 24 (0.660) | coding (437/639 nt) | yjbF | extracellular polysaccharide production lipoprotein | |||||
| * | ? | CP009273 | = 4227539 | 79 (2.060) | 8 (0.220) | 4/296 | NT | 10.2% | coding (715/738 nt) | yjbG | extracellular polysaccharide export OMA protein |
| ? | CP009273 | = 4227719 | 67 (1.850) | coding (158/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein | |||||
| * | ? | CP009273 | 4245818 = | 69 (1.800) | 11 (0.300) | 6/298 | NT | 15.2% | coding (577/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase |
| ? | CP009273 | 4246005 = | 57 (1.560) | coding (390/2424 nt) | plsB | glycerol‑3‑phosphate O‑acyltransferase | |||||
| * | ? | CP009273 | 4248643 = | 68 (1.770) | 5 (0.130) | 4/304 | NT | 6.7% | coding (974/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| ? | CP009273 | 4248767 = | 73 (1.960) | coding (1098/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | |||||
| * | ? | CP009273 | 4273208 = | 69 (1.800) | 4 (0.110) | 4/302 | NT | 5.5% | coding (1623/1650 nt) | actP | acetate transporter |
| ? | CP009273 | 4273361 = | 70 (1.890) | coding (1470/1650 nt) | actP | acetate transporter | |||||
| * | ? | CP009273 | = 4284794 | 46 (1.200) | 4 (0.110) | 4/298 | NT | 6.7% | coding (386/1314 nt) | gltP | glutamate/aspartate:proton symporter |
| ? | CP009273 | = 4285146 | 67 (1.840) | coding (738/1314 nt) | gltP | glutamate/aspartate:proton symporter | |||||
| * | ? | CP009273 | 4289833 = | 64 (1.670) | 5 (0.140) | 5/292 | NT | 7.6% | coding (1015/1467 nt) | mdtP | outer membrane factor of efflux pump |
| ? | CP009273 | 4289997 = | 62 (1.730) | coding (851/1467 nt) | mdtP | outer membrane factor of efflux pump | |||||
| * | ? | CP009273 | 4297427 = | 56 (1.460) | 8 (0.210) | 6/306 | NT | 12.4% | coding (190/930 nt) | alsK | D‑allose kinase |
| ? | CP009273 | 4297594 = | 58 (1.550) | coding (23/930 nt) | alsK | D‑allose kinase | |||||
| * | ? | CP009273 | = 4300605 | 68 (1.770) | 9 (0.240) | 8/302 | NT | 11.2% | coding (193/1533 nt) | alsA | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
| ? | CP009273 | = 4300798 | 78 (2.110) | intergenic (‑1/+126) | alsA/alsB | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components/D‑allose transporter subunit | |||||
| * | ? | CP009273 | 4306454 = | 78 (2.030) | 5 (0.140) | 5/290 | NT | 6.2% | coding (582/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306640 = | 80 (2.250) | coding (396/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | CP009273 | = 4309539 | 111 (2.890) | 7 (0.190) | 4/302 | NT | 6.6% | coding (942/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit |
| ? | CP009273 | = 4309773 | 91 (2.460) | coding (708/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||
| * | ? | CP009273 | = 4313378 | 70 (1.820) | 4 (0.110) | 4/308 | NT | 5.4% | coding (792/1017 nt) | phnD | phosphonate ABC transporter periplasmic binding protein |
| ? | CP009273 | = 4313474 | 72 (1.910) | coding (696/1017 nt) | phnD | phosphonate ABC transporter periplasmic binding protein | |||||
| * | ? | CP009273 | 4322243 = | 65 (1.690) | 4 (0.110) | 4/306 | NT | 6.5% | coding (847/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| ? | CP009273 | 4322359 = | 51 (1.360) | coding (731/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR | |||||
| * | ? | CP009273 | 4324095 = | 75 (1.950) | 6 (0.160) | 6/298 | NT | 8.3% | coding (1313/1644 nt) | eptA | lipid A phosphoethanolamine transferase |
| ? | CP009273 | 4325518 = | 61 (1.670) | coding (1331/1338 nt) | adiC | arginine:agmatine antiporter | |||||
| * | ? | CP009273 | = 4337957 | 55 (1.430) | 19 (0.530) | 6/294 | NT | 25.2% | coding (605/1341 nt) | dcuB | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor |
| ? | CP009273 | = 4338442 | 61 (1.690) | coding (120/1341 nt) | dcuB | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor | |||||
| * | ? | CP009273 | 4344555 = | 64 (1.670) | 4 (0.110) | 4/302 | NT | 9.0% | intergenic (‑21/+216) | lysU/dtpC | lysine tRNA synthetase, inducible/dipeptide and tripeptide permease |
| ? | CP009273 | 4344737 = | 19 (0.510) | intergenic (‑203/+34) | lysU/dtpC | lysine tRNA synthetase, inducible/dipeptide and tripeptide permease | |||||
| * | ? | CP009273 | 4368615 = | 58 (1.510) | 6 (0.170) | 5/294 | NT | 10.1% | coding (147/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| ? | CP009273 | 4368733 = | 52 (1.440) | coding (29/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak | |||||
| * | ? | CP009273 | 4369004 = | 56 (1.460) | 4 (0.110) | 4/296 | NT | 7.2% | coding (180/360 nt) | frdD | fumarate reductase (anaerobic), membrane anchor subunit |
| ? | CP009273 | 4369509 = | 51 (1.410) | coding (81/396 nt) | frdC | fumarate reductase (anaerobic), membrane anchor subunit | |||||
| * | ? | CP009273 | 4378533 = | 52 (1.350) | 9 (0.250) | 7/292 | NT | 16.5% | coding (655/3324 nt) | mscM | mechanosensitive channel protein, miniconductance |
| ? | CP009273 | 4378844 = | 43 (1.200) | coding (344/3324 nt) | mscM | mechanosensitive channel protein, miniconductance | |||||
| * | ? | CP009273 | 4383564 = | 54 (1.400) | 4 (0.110) | 4/306 | NT | 6.8% | coding (321/1140 nt) | queG | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis |
| ? | CP009273 | 4383679 = | 57 (1.520) | coding (206/1140 nt) | queG | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis | |||||
| * | ? | CP009273 | 4383937 = | 72 (1.870) | 5 (0.140) | 4/298 | NT | 6.2% | coding (55/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| ? | CP009273 | 4384053 = | 82 (2.250) | coding (171/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase | |||||
| * | ? | CP009273 | 4391387 = | 62 (1.610) | 5 (0.140) | 4/296 | NT | 7.1% | coding (899/1281 nt) | hflX | GTPase, stimulated by 50S subunit binding |
| ? | CP009273 | 4391746 = | 73 (2.010) | coding (1258/1281 nt) | hflX | GTPase, stimulated by 50S subunit binding | |||||
| * | ? | CP009273 | = 4393089 | 63 (1.640) | 4 (0.110) | 4/294 | NT | 6.5% | coding (1235/1260 nt) | hflK | modulator for HflB protease specific for phage lambda cII repressor |
| ? | CP009273 | = 4393204 | 57 (1.580) | coding (88/1005 nt) | hflC | modulator for HflB protease specific for phage lambda cII repressor | |||||
| * | ? | CP009273 | 4398970 = | NA (NA) | 8 (0.210) | 6/306 | NT | 11.8% | noncoding (1/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4399068 = | 60 (1.590) | intergenic (+156/‑24) | rnr/rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | = 4398990 | 44 (1.270) | 15 (0.430) | 5/284 | NT | 25.4% | noncoding (21/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4399051 | NA (NA) | noncoding (82/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4400073 = | 63 (1.640) | 12 (0.330) | 6/296 | NT | 17.3% | coding (124/402 nt) | yjfI | DUF2170 family protein |
| ? | CP009273 | 4400344 = | 55 (1.520) | coding (395/402 nt) | yjfI | DUF2170 family protein | |||||
| * | ? | CP009273 | = 4427589 | 125 (3.250) | 12 (0.330) | 8/296 | NT | 11.1% | coding (66/939 nt) | ytfI | uncharacterized protein |
| ? | CP009273 | = 4427843 | 75 (2.070) | coding (320/939 nt) | ytfI | uncharacterized protein | |||||
| * | ? | CP009273 | 4433728 = | 45 (1.170) | 8 (0.220) | 5/296 | NT | 17.5% | coding (1530/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | CP009273 | 4434929 = | 33 (0.910) | coding (1001/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| * | ? | CP009273 | 4437206 = | 57 (1.480) | 10 (0.280) | 7/294 | NT | 14.2% | coding (3278/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | CP009273 | 4437307 = | 67 (1.860) | coding (3379/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| * | ? | CP009273 | = 4437215 | 56 (1.460) | 8 (0.220) | 5/294 | NT | 11.8% | coding (3287/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | CP009273 | = 4437296 | 67 (1.860) | coding (3368/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| * | ? | CP009273 | 4447006 = | NA (NA) | 4 (0.110) | 4/298 | NT | 10.5% | noncoding (5/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 4447104 = | 34 (0.930) | intergenic (+129/+27) | mpl/yjgA | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein | |||||
| * | ? | CP009273 | = 4455951 | 37 (0.960) | 13 (0.350) | 5/306 | NT | 28.2% | coding (47/1422 nt) | treB | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component |
| ? | CP009273 | = 4456022 | 30 (0.800) | intergenic (‑25/+94) | treB/treR | fused trehalose(maltose)‑specific PTS enzyme: IIB component/IIC component/trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
| * | ? | CP009273 | = 4456921 | 68 (1.770) | 7 (0.190) | 4/300 | NT | 9.8% | coding (143/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor |
| ? | CP009273 | = 4457009 | 64 (1.740) | coding (55/948 nt) | treR | trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor | |||||
| * | ? | CP009273 | = 4472788 | 46 (1.200) | 5 (0.130) | 4/306 | NT | 9.5% | coding (867/2856 nt) | valS | valyl‑tRNA synthetase |
| ? | CP009273 | = 4472944 | 50 (1.330) | coding (711/2856 nt) | valS | valyl‑tRNA synthetase | |||||
| * | ? | CP009273 | = 4488113 | 16 (0.420) | 9 (0.250) | 5/300 | NT | 37.1% | coding (25/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | = 4488470 | NA (NA) | coding (59/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 4488198 | 3 (0.080) | 5 (0.130) | 4/308 | NT | 63.0% | coding (110/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | = 4488590 | NA (NA) | coding (179/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 4488211 | 3 (0.080) | 14 (0.390) | 6/292 | NT | 83.4% | coding (123/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | = 4488577 | NA (NA) | coding (166/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 4496896 | 79 (2.060) | 10 (0.270) | 9/300 | NT | 10.6% | pseudogene (219/249 nt) | yjhE | pseudogene, KpLE2 phage‑like element |
| ? | CP009273 | = 4497160 | 93 (2.530) | pseudogene (147/255 nt) | insO | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related | |||||
| * | ? | CP009273 | = 4514662 | 60 (1.560) | 5 (0.130) | 5/310 | NT | 6.8% | coding (166/906 nt) | yjhH | putative lyase/synthase |
| ? | CP009273 | = 4514890 | 78 (2.060) | coding (731/789 nt) | yjhI | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 4519391 | 74 (1.930) | 4 (0.110) | 4/294 | NT | 5.7% | coding (670/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | CP009273 | = 4519682 | 63 (1.750) | coding (379/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| * | ? | CP009273 | 4527387 = | 57 (1.480) | 10 (0.270) | 8/300 | NT | 15.4% | coding (25/981 nt) | nanS | 9‑O‑acetyl N‑acetylneuraminic acid esterase |
| ? | CP009273 | 4527631 = | 55 (1.500) | coding (952/1107 nt) | nanM | N‑acetylneuraminic acid mutarotase | |||||
| * | ? | CP009273 | = 4540080 | 68 (1.770) | 6 (0.160) | 6/304 | NT | 8.6% | coding (1034/1344 nt) | gntP | fructuronate transporter |
| ? | CP009273 | = 4540469 | 61 (1.640) | coding (645/1344 nt) | gntP | fructuronate transporter | |||||
| * | ? | CP009273 | 4540662 = | 81 (2.110) | 10 (0.270) | 4/304 | NT | 11.6% | coding (452/1344 nt) | gntP | fructuronate transporter |
| ? | CP009273 | 4541018 = | 74 (1.990) | coding (96/1344 nt) | gntP | fructuronate transporter | |||||
| * | ? | CP009273 | 4551890 = | 107 (2.780) | 7 (0.190) | 5/296 | NT | 7.5% | coding (603/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter |
| ? | CP009273 | 4552053 = | 72 (1.990) | coding (440/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter | |||||
| * | ? | CP009273 | 4565134 = | 46 (1.200) | 4 (0.110) | 4/296 | NT | 8.4% | pseudogene (1399/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| ? | CP009273 | 4565298 = | 44 (1.210) | pseudogene (1563/2937 nt) | yjiV | pseudogene; conserved hypothetical protein | |||||
| * | ? | CP009273 | 4581671 = | 78 (2.030) | 5 (0.140) | 5/294 | NT | 6.2% | coding (198/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| ? | CP009273 | 4582630 = | 78 (2.170) | coding (1157/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor | |||||
| * | ? | CP009273 | 4582694 = | 82 (2.130) | 11 (0.300) | 7/300 | NT | 16.6% | coding (1221/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| ? | CP009273 | 4582978 = | 32 (0.870) | coding (1505/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor | |||||
| * | ? | CP009273 | = 4598317 | 29 (0.750) | 6 (0.160) | 6/300 | NT | 16.7% | coding (316/447 nt) | rimI | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| ? | CP009273 | = 4598396 | 32 (0.870) | coding (395/447 nt) | rimI | ribosomal‑protein‑S18‑alanine N‑acetyltransferase | |||||
| * | ? | CP009273 | = 4604655 | 75 (1.950) | 8 (0.210) | 6/308 | NT | 9.8% | coding (706/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | CP009273 | = 4605047 | 73 (1.940) | coding (314/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | CP009273 | 4626348 = | 39 (1.010) | 9 (0.250) | 7/292 | NT | 18.7% | coding (525/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | CP009273 | 4626664 = | 42 (1.180) | coding (152/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon | |||||
| * | ? | CP009273 | = 4629628 | 49 (1.270) | 10 (0.280) | 8/292 | NT | 14.9% | coding (496/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA |
| ? | CP009273 | = 4630009 | 69 (1.930) | coding (115/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA | |||||