mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 164,770 | +G | coding (800/2244 nt) | fhuA → | ferrichrome outer membrane transporter |
| JC | CP009273 | 1,257,022 | (AGTGATTGGTACACGAGC)1→2 | coding (310/948 nt) | prs ← | phosphoribosylpyrophosphate synthase |
| MC JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | CP009273 | 2,528,814 | G→A | D464N (GAC→AAC) | ptsI → | PEP‑protein phosphotransferase of PTS system (enzyme I) |
| MC JC | CP009273 | 2,897,462 | Δ61 bp | intergenic (+729/+584) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | CP009273 | 3,051,140 | A→T | H210Q (CAT→CAA) | serA ← | D‑3‑phosphoglycerate dehydrogenase |
| RA | CP009273 | 3,480,047 | T→A | M190K (ATG→AAG) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | CP009273 | 3,547,392 | T→A | W317R (TGG→AGG) | malT → | mal regulon transcriptional activator |
| RA | CP009273 | 3,723,336 | T→G | K264Q (AAA→CAA) | xylA ← | D‑xylose isomerase |
| RA | CP009273 | 3,907,225 | +A | coding (1336/1371 nt) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| RA | CP009273 | 4,151,176 | T→G | V42G (GTC→GGC) | fabR → | transcriptional repressor of fabA and fabB |
| RA | CP009273 | 4,154,051 | G→C | G162A (GGA→GCA) | btuB → | vitamin B12/cobalamin outer membrane transporter |
| RA | CP009273 | 4,224,817 | G→T | G378C (GGT→TGT) | pgi → | glucosephosphate isomerase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 782240 | 783098 | 859 | 100 [98] | [97] 100 | gpmA | gpmA |
| * | * | ÷ | CP009273 | 1254187 | 1254572 | 386 | 100 [98] | [98] 102 | ychH | ychH |
| * | * | ÷ | CP009273 | 1781647 | 1782586 | 940 | 100 [98] | [99] 100 | ppsR | ppsR |
| * | * | ÷ | CP009273 | 1800564 | 1801601 | 1038 | 101 [98] | [99] 100 | pfkB | pfkB |
| * | * | ÷ | CP009273 | 1929062 | 1930615 | 1554 | 102 [99] | [96] 100 | zwf | zwf |
| * | * | ÷ | CP009273 | 3778559 | 3780215 | 1657 | 100 [99] | [99] 100 | gpmM–[envC] | gpmM,[envC] |
| * | * | ÷ | CP009273 | 4097427 | 4098475 | 1049 | 105 [99] | [98] 100 | pfkA | pfkA |
| * | * | ÷ | CP009273 | 4205384 | 4210272 | 4889 | 100 [97] | [99] 100 | aceB–[arpA] | aceB,aceA,aceK,[arpA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 148 (0.880) | 159 (0.990) +AATTCC |
99/238 | 0.9 | 52.2% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 4033989 = | 158 (0.940) | noncoding (113/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||