mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 164,770 | +G | coding (800/2244 nt) | fhuA → | ferrichrome outer membrane transporter |
| MC JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | CP009273 | 2,528,814 | G→A | D464N (GAC→AAC) | ptsI → | PEP‑protein phosphotransferase of PTS system (enzyme I) |
| RA | CP009273 | 4,151,176 | T→G | V42G (GTC→GGC) | fabR → | transcriptional repressor of fabA and fabB |
| RA | CP009273 | 4,154,051 | G→C | G162A (GGA→GCA) | btuB → | vitamin B12/cobalamin outer membrane transporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 782261 | 783097 | 837 | 77 [76] | [76] 78 | gpmA | gpmA |
| * | * | ÷ | CP009273 | 1800583 | 1801577 | 995 | 78 [76] | [74] 77 | pfkB | pfkB |
| * | * | ÷ | CP009273 | 1929077 | 1930610 | 1534 | 78 [75] | [76] 77 | zwf | zwf |
| * | * | ÷ | CP009273 | 3778545 | 3780205 | 1661 | 78 [76] | [76] 77 | gpmM–[envC] | gpmM,[envC] |
| * | * | ÷ | CP009273 | 4097447 | 4098461 | 1015 | 78 [74] | [75] 77 | pfkA | pfkA |
| * | * | ÷ | CP009273 | 4205402 | 4210251 | 4850 | 79 [76] | [74] 77 | aceB–[arpA] | aceB,aceA,[aceK],[arpA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 114 (0.830) | 108 (0.060) +AATTCCCC |
74/184 | 1.0 | 50.7% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | KX077536 | 8127 = | NA (NA) | intergenic (+52/–) | unknown/– | cat/– | |||||
| * | ? | KX077536 | 6245 = | 2353 (0.640) | 1007 (0.290) | 183/186 | 0.0 | 32.0% | coding (669/1020 nt) | unknown | prkA |
| ? | KX077536 | = 6255 | 2099 (0.610) | coding (679/1020 nt) | unknown | prkA | |||||