mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 204,511 | C→T | 100% | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 204,556 | A→G | 100% | intergenic (+156/‑28) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA |
| RA | 1,036,505 | G→A | 100% | A632A (GCG→GCA) | rsxC → | fused predicted 4Fe‑4S ferredoxin‑type protein |
| RA | 1,763,556 | T→C | 40.3% | noncoding (288/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,763,636 | A→G | 23.3% | noncoding (208/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 1,892,019:1 | +GC | 100% | intergenic (‑437/+54) | gudP ← / ← ygdL | predicted D‑glucarate transporter/conserved hypothetical protein |
| RA | 2,359,867 | G→A | 29.5% | noncoding (1228/2905 nt) | rrlA ← | 23S ribosomal RNA |
| RA | 2,359,876 | C→T | 27.4% | noncoding (1219/2905 nt) | rrlA ← | 23S ribosomal RNA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | Exported | 444383 | 444434 | 52 | 10 [8] | [6] 9 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | Exported | 1154063 | 1154101 | 39 | 10 [8] | [7] 9 | astE | succinylglutamate desuccinylase |
| * | * | ÷ | Exported | 1368198 | 1368259–1368237 | 40–62 | 9 [5] | [8] 9 | yohH/dusC | conserved hypothetical protein/tRNA‑dihydrouridine synthase C |
| * | * | ÷ | Exported | 1616714 | 1616749 | 36 | 9 [8] | [8] 9 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | Exported | 2858109 | 2858172 | 64 | 9 [8] | [7] 9 | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |