mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 58,662 | G→A | 24.6% | V63V (GTG→GTA) | yabP → | hypothetical protein |
| RA | 70,434 | C→T | 57.1% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 44.6% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 56.3% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 48.3% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 48.2% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 46.4% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 46.5% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 53.6% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 51.1% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 236,101 | A→C | 59.5% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 60.1% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 241,172 | C→T | 15.4% | G711D (GGT→GAT) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 267,502 | G→T | 12.4% | P228H (CCT→CAT) | ykfA ← | predicted GTP‑binding protein |
| RA | 275,785 | G→A | 10.0% | V413I (GTA→ATA) | mmuP → | predicted S‑methylmethionine transporter |
| RA | 281,512 | C→T | 11.8% | S11F (TCC→TTC) | yagE → | predicted lyase/synthase |
| RA | 285,498 | G→A | 11.9% | A294T (GCC→ACC) | yagG → | predicted sugar transporter |
| RA | 323,778 | G→A | 5.3% | intergenic (+101/+142) | ykgG → / ← ykgH | predicted transporter/predicted inner membrane protein |
| RA | 345,099 | C→T | 17.5% | A155T (GCC→ACC) | yahN ← | neutral amino‑acid efflux system |
| RA | 349,140 | C→T | 12.5% | intergenic (+344/‑96) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 406,395 | C→T | 13.5% | intergenic (+1/‑257) | yaiA → / → aroM | hypothetical protein/conserved hypothetical protein |
| RA | 429,850 | T→C | 10.2% | Y8H (TAT→CAT) | yajD → | conserved hypothetical protein |
| RA | 459,715 | A→G | 16.2% | Y535C (TAC→TGC) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 464,946 | A→G | 10.0% | F531L (TTC→CTC) | ybaE ← | predicted transporter subunit |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 647,863 | A→G | 8.4% | M311T (ATG→ACG) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 695,215 | C→T | 10.9% | A55T (GCT→ACT) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 702,273 | C→T | 14.6% | D301N (GAT→AAT) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 704,757 | G→A | 8.5% | R131H (CGC→CAC) | nagE → | fused N‑acetyl glucosamine specific PTS enzyme IICBA components |
| RA | 711,161 | C→T | 13.7% | intergenic (‑93/+196) | fur ← / ← fldA | DNA‑binding transcriptional dual regulator/flavodoxin 1 |
| RA | 833,307 | G→T | 12.2% | T22T (ACC→ACA) | ybiA ← | conserved hypothetical protein |
| RA | 861,111 | G→A | 10.4% | L640L (CTG→TTG) | ybiW ← | predicted pyruvate formate lyase |
| RA | 862,250 | G→T | 13.8% | T260N (ACT→AAT) | ybiW ← | predicted pyruvate formate lyase |
| RA | 1,008,134 | C→T | 14.3% | intergenic (‑112/‑132) | ycbX ← / → ycbY | predicted 2Fe‑2S cluster‑containing protein/predicted methyltransferase |
| RA | 1,028,434 | G→A | 14.8% | D23N (GAC→AAC) | yccU → | predicted CoA‑binding protein with NAD(P)‑binding Rossmann‑fold domain |
| RA | 1,055,413 | A→G | 20.0% | D396D (GAT→GAC) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,074,318 | G→T | 8.7% | A39E (GCG→GAG) | ycdM ← | predicted monooxygenase |
| RA | 1,084,947 | A→G | 18.0% | K384E (AAA→GAA) | ycdB → | conserved hypothetical protein |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,099,547 | C→T | 10.5% | A143V (GCC→GTC) | ycdX → | predicted zinc‑binding hydrolase |
| RA | 1,112,202 | T→C | 18.2% | F431L (TTT→CTT) | mdoG → | glucan biosynthesis protein, periplasmic |
| RA | 1,115,786 | T→C | 7.7% | intergenic (‑28/+55) | msyB ← / ← mdtG | hypothetical protein/predicted drug efflux system |
| RA | 1,168,595 | G→T | 8.0% | A312S (GCT→TCT) | ndh → | respiratory NADH dehydrogenase 2/cupric reductase |
| RA | 1,199,872 | T→C | 10.9% | intergenic (‑58/‑400) | ymfE ← / → lit | predicted inner membrane protein/cell death peptidase, inhibitor of T4 late gene expression |
| RA | 1,224,919 | G→A | 7.5% | intergenic (‑423/‑123) | ymgG ← / → ymgH | hypothetical protein/hypothetical protein |
| RA | 1,255,918 | C→T | 12.5% | G538S (GGC→AGC) | ycgV ← | predicted adhesin |
| RA | 1,295,635 | T→C | 11.9% | Y178H (TAC→CAC) | tdk → | thymidine kinase/deoxyuridine kinase |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,364,882 | G→A | 5.9% | V142V (GTG→GTA) | puuC → | gamma‑Glu‑gamma‑aminobutyraldehyde dehydrogenase, NAD(P)H‑dependent |
| RA | 1,389,997 | C→T | 11.3% | intergenic (+22/+22) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| RA | 1,389,998 | A→T | 11.1% | intergenic (+23/+21) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| RA | 1,389,999 | A→G | 11.4% | intergenic (+24/+20) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator, tyrosine‑binding/lipid hydroperoxide peroxidase |
| RA | 1,393,837 | C→T | 12.1% | R45* (CGA→TGA) | ycjZ → | predicted DNA‑binding transcriptional regulator |
| RA | 1,413,523 | G→A | 15.2% | S47F (TCC→TTC) | ydaO ← | predicted C32 tRNA thiolase |
| RA | 1,559,619 | A→G | 16.7% | L45S (TTA→TCA) | ddpF ← | D‑Ala‑D‑Ala transporter subunit |
| RA | 1,590,693 | A→G | 8.9% | L341L (CTT→CTC) | ydeT ← | hypothetical protein |
| RA | 1,683,257 | G→A | 17.1% | D190N (GAT→AAT) | folM → | dihydrofolate reductase isozyme |
| RA | 1,691,217 | G→A | 10.4% | A310T (GCA→ACA) | manA → | mannose‑6‑phosphate isomerase |
| RA | 1,872,074 | T→C | 8.0% | intergenic (+122/‑25) | yeaH → / → yeaI | conserved hypothetical protein/predicted diguanylate cyclase |
| RA | 2,082,018 | A→G | 13.1% | I237I (ATT→ATC) | yeeA ← | conserved inner membrane protein |
| RA | 2,176,396 | C→T | 10.0% | M6I (ATG→ATA) | gatC ← | galactitol‑specific enzyme IIC component of PTS |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,358,400 | G→A | 16.4% | A362T (GCT→ACT) | glpA → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding |
| RA | 2,462,102 | A→G | 9.6% | F53L (TTC→CTC) | sixA ← | phosphohistidine phosphatase |
| RA | 2,493,033 | C→T | 6.5% | Q1072* (CAG→TAG) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| RA | 2,587,162 | G→A | 10.2% | E304E (GAG→GAA) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,622,878 | T→C | 6.5% | G393G (GGT→GGC) | ppk → | polyphosphate kinase, component of RNA degradosome |
| RA | 2,632,686 | A→G | 7.4% | V14A (GTT→GCT) | guaB ← | IMP dehydrogenase |
| RA | 2,688,553 | A→T | 7.8% | V401D (GTC→GAC) | yfhK ← | predicted sensory kinase in two‑component system |
| RA | 2,719,037 | G→A | 17.1% | V143V (GTG→GTA) | yfiQ → | fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit |
| RA | 2,771,105 | G→A | 11.5% | N79N (AAC→AAT) | ypjL ← | predicted inner membrane protein |
| RA | 2,809,581 | G→A | 54.8% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,863,059 | G→A | 11.5% | L56L (CTG→CTA) | ygbM → | conserved hypothetical protein |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,951,877 | G→A | 6.8% | A928V (GCT→GTT) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,966,215 | T→G | 17.6% | K292N (AAA→AAC) | ptsP ← | fused PEP‑protein phosphotransferase (enzyme I) of PTS system |
| RA | 2,972,729 | T→C | 13.1% | S648G (AGC→GGC) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase |
| RA | 3,001,511 | T→C | 12.8% | I81T (ATA→ACA) | xdhB → | xanthine dehydrogenase, FAD‑binding subunit |
| RA | 3,012,950 | A→G | 13.8% | V255A (GTG→GCG) | yqeC ← | conserved hypothetical protein |
| RA | 3,018,853 | C→T | 12.0% | T346I (ACT→ATT) | ssnA → | predicted chlorohydrolase/aminohydrolase |
| RA | 3,059,788 | C→T | 12.0% | L95L (CTG→TTG) | yliK → | methylmalonyl‑CoA mutase |
| RA | 3,065,341 | G→T | 10.1% | I163I (ATC→ATA) | ygfI ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,113,649 | C→T | 16.7% | A1374T (GCA→ACA) | yghJ ← | predicted inner membrane lipoprotein |
| RA | 3,139,938 | C→T | 6.0% | R2H (CGT→CAT) | hybD ← | predicted maturation element for hydrogenase 2 |
| RA | 3,191,865 | G→A | 7.5% | A116T (GCC→ACC) | yqiK → | conserved hypothetical protein |
| RA | 3,224,816 | C→T | 8.3% | H147Y (CAT→TAT) | ebgC → | cryptic beta‑D‑galactosidase, beta subunit |
| RA | 3,244,017 | G→A | 9.7% | Q86Q (CAG→CAA) | exuT → | hexuronate transporter |
| RA | 3,249,944 | C→A | 10.4% | P89T (CCG→ACG) | yqjG → | predicted S‑transferase |
| RA | 3,253,271 | C→T | 11.9% | V99V (GTC→GTT) | yhaK → | predicted pirin‑related protein |
| RA | 3,259,237 | G→A | 10.8% | S613F (TCT→TTT) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,294,438 | T→C | 10.6% | L395S (TTG→TCG) | yraM → | conserved hypothetical protein |
| RA | 3,306,434 | G→A | 13.5% | L428L (CTG→TTG) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,332,615 | T→A | 11.3% | intergenic (‑25/+102) | yhbE ← / ← rpmA | conserved inner membrane protein/50S ribosomal subunit protein L27 |
| RA | 3,439,867 | T→C | 10.9% | intergenic (‑89/‑6) | nudC ← / → rsd | NADH pyrophosphatase/stationary phase protein, binds sigma 70 RNA polymerase subunit |
| RA | 3,458,921 | T→C | 13.7% | K6K (AAA→AAG) | nusG ← | transcription termination factor |
| RA | 3,472,611 | G→A | 15.5% | G144G (GGC→GGT) | btuB ← | vitamin B12/cobalamin outer membrane transporter |
| RA | 3,506,673 | A→G | 5.2% | I58I (ATT→ATC) | metL ← | fused aspartokinase II and homoserine dehydrogenase II |
| RA | 3,506,676 | C→T | 5.1% | L57L (TTG→TTA) | metL ← | fused aspartokinase II and homoserine dehydrogenase II |
| RA | 3,521,572 | G→A | 14.0% | L157L (CTG→CTA) | glpX → | fructose 1,6‑bisphosphatase II |
| RA | 3,533,883 | T→C | 8.2% | intergenic (‑24/+125) | yiiM ← / ← kdgT | conserved hypothetical protein/2‑keto‑3‑deoxy‑D‑gluconate transporter |
| RA | 3,564,985 | T→C | 11.1% | F21L (TTT→CTT) | yihS → | predicted glucosamine isomerase |
| RA | 3,584,576 | G→A | 8.9% | P21S (CCA→TCA) | hemN ← | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
| RA | 3,639,730 | T→C | 6.7% | K222R (AAA→AGA) | xerC ← | site‑specific tyrosine recombinase |
| RA | 3,659,825 | C→T | 11.3% | M193I (ATG→ATA) | wzxE ← | O‑antigen translocase |
| RA | 3,684,513 | G→A | 100% | pseudogene (546/582 nt) pseudogene (1609/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,624 | C→A | 100% | pseudogene (435/582 nt) pseudogene (1498/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,643 | T→G | 100% | pseudogene (416/582 nt) pseudogene (1479/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,687 | A→G | 100% | pseudogene (372/582 nt) pseudogene (1435/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,705 | G→A | 100% | pseudogene (354/582 nt) pseudogene (1417/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,717 | A→G | 100% | pseudogene (342/582 nt) pseudogene (1405/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,858 | A→G | 100% | pseudogene (201/582 nt) pseudogene (1264/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,870 | C→T | 100% | pseudogene (189/582 nt) pseudogene (1252/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,885 | T→C | 100% | pseudogene (174/582 nt) pseudogene (1237/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,921 | A→G | 100% | pseudogene (138/582 nt) pseudogene (1201/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,927 | A→G | 100% | pseudogene (132/582 nt) pseudogene (1195/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,038 | C→T | 100% | pseudogene (21/582 nt) pseudogene (1084/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,100 | A→C | 100% | pseudogene (1022/1645 nt) | ilvG ← | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,129 | T→A | 100% | pseudogene (993/1645 nt) | ilvG ← | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,143:1 | +A | 87.3% | pseudogene (979/1645 nt) pseudogene (979/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,143:2 | +T | 87.3% | pseudogene (979/1645 nt) pseudogene (979/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,267 | C→T | 100% | pseudogene (855/1645 nt) pseudogene (855/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,312 | G→A | 100% | pseudogene (810/1645 nt) pseudogene (810/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,329 | G→A | 100% | pseudogene (793/1645 nt) pseudogene (793/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,333 | A→G | 100% | pseudogene (789/1645 nt) pseudogene (789/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,354 | T→C | 100% | pseudogene (768/1645 nt) pseudogene (768/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,369 | G→A | 100% | pseudogene (753/1645 nt) pseudogene (753/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,375 | C→T | 100% | pseudogene (747/1645 nt) pseudogene (747/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,704,874 | C→T | 8.2% | M164I (ATG→ATA) | trkD ← | potassium transporter |
| RA | 3,707,034 | G→A | 14.5% | A483T (GCC→ACC) | yieN → | fused predicted transcriptional regulators |
| RA | 3,727,745 | T→C | 11.7% | V168V (GTT→GTC) | pstA → | phosphate transporter subunit |
| RA | 3,733,358 | T→C | 8.7% | Y127H (TAC→CAC) | bglB → | cryptic phospho‑beta‑glucosidase B |
| RA | 3,735,427 | G→A | 13.0% | A323T (GCA→ACA) | bglH → | carbohydrate‑specific outer membrane porin, cryptic |
| RA | 3,739,325 | C→T | 8.1% | V195I (GTT→ATT) | yieH ← | predicted hydrolase |
| RA | 3,741,048 | G→A | 16.4% | G326D (GGC→GAC) | yieG → | predicted inner membrane protein |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,911 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| RA | 3,764,662 | T→C | 17.5% | N106D (AAT→GAT) | yidX ← | predicted lipoproteinC |
| RA | 3,778,494 | C→T | 8.2% | pseudogene (67/639 nt) | glvG → | ECK3673:JW3658:b3681; predicted 6‑phospho‑beta‑glucosidase |
| RA | 3,806,471 | G→A | 13.6% | P198P (CCG→CCA) | yicI → | predicted alpha‑glucosidase |
| RA | 3,824,278 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,324 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,360 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,366 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,372 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,378 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,408 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,512 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,522 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,531:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,781 | T→C | 100% | D45D (GAT→GAC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,814 | G→A | 100% | A56A (GCG→GCA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,826 | C→T | 100% | S60S (TCC→TCT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,880 | C→G | 100% | A78A (GCC→GCG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,886 | A→T | 100% | T80T (ACA→ACT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,892 | T→C | 100% | A82A (GCT→GCC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,898 | A→G | 100% | A84A (GCA→GCG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,913 | C→T | 100% | H89H (CAC→CAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,919 | G→T | 100% | L91L (CTG→CTT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,949 | A→G | 100% | E101E (GAA→GAG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,051 | G→A | 100% | E135E (GAG→GAA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,072 | C→T | 100% | A142A (GCC→GCT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,096 | G→A | 100% | V150V (GTG→GTA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,108 | C→T | 100% | L154L (CTC→CTT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,123 | C→G | 100% | R159R (CGC→CGG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,204 | C→T | 100% | D186D (GAC→GAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,213 | T→C | 100% | A189A (GCT→GCC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,216 | C→T | 100% | Y190Y (TAC→TAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,915,031 | T→C | 12.8% | intergenic (+29/‑66) | ysaB → / → glyQ | hypothetical protein/glycine tRNA synthetase, alpha subunit |
| RA | 3,915,239 | A→G | 12.3% | E48G (GAG→GGG) | glyQ → | glycine tRNA synthetase, alpha subunit |
| RA | 3,936,855 | G→A | 7.3% | D97N (GAC→AAC) | dppD → | dipeptide transporter |
| RA | 4,012,374 | G→A | 9.4% | A500T (GCC→ACC) | rbbA → | fused ribosome‑associated ATPases |
| RA | 4,017,701 | T→C | 12.9% | N1175D (AAC→GAC) | rhsB ← | rhsB element core protein RshB |
| RA | 4,027,857 | A→G | 20.0% | L232L (TTG→CTG) | yhhT ← | predicted inner membrane protein |
| RA | 4,032,017 | C→T | 13.2% | D650N (GAC→AAC) | zntA ← | zinc, cobalt and lead efflux system |
| RA | 4,083,310 | G→A | 12.3% | G325E (GGG→GAG) | rtcB → | conserved hypothetical protein |
| RA | 4,093,239 | C→A | 8.6% | G207C (GGT→TGT) | gntT ← | gluconate transporter, high‑affinity GNT I system |
| RA | 4,094,615 | G→A | 16.4% | L60L (CTG→TTG) | gntY ← | predicted gluconate transport associated protein |
| RA | 4,123,873 | G→A | 8.0% | R255H (CGC→CAC) | damX → | hypothetical protein |
| RA | 4,125,002 | A→T | 6.7% | D167V (GAT→GTT) | dam → | DNA adenine methylase |
| RA | 4,184,955 | A→T | 13.3% | intergenic (‑117/‑63) | gspC ← / → gspA | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| RA | 4,184,957 | T→A | 13.4% | intergenic (‑119/‑61) | gspC ← / → gspA | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| RA | 4,220,646 | C→T | 15.6% | P527S (CCA→TCA) | aceB → | malate synthase A |
| RA | 4,244,989 | T→A | 5.9% | I286F (ATC→TTC) | xylE ← | D‑xylose transporter |
| MC JC | 4,310,363 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,315,022 | C→T | 10.3% | D213N (GAC→AAC) | alsA ← | fused D‑allose transporter subunits and ATP‑binding components of ABC superfamily |
| RA | 4,328,658 | C→T | 13.5% | V125I (GTC→ATC) | phnD ← | phosphonate/organophosphate ester transporter subunit |
| RA | 4,333,476 | G→A | 9.7% | R555H (CGC→CAC) | yjdA → | conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| RA | 4,350,230 | G→A | 11.9% | R3C (CGC→TGC) | yjdF ← | conserved inner membrane protein |
| RA | 4,371,271 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,392,088 | G→T | 20.8% | L655M (CTG→ATG) | yjeP ← | predicted mechanosensitive channel |
| RA | 4,418,870 | A→G | 10.8% | *388* (TAA→TGA) | yjfC → | predicted synthetase/amidase |
| RA | 4,563,587 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,586,635 | G→A | 14.3% | P365L (CCG→CTG) | hsdM ← | DNA methylase M |
| RA | 4,591,443 | G→A | 7.3% | T18I (ACA→ATA) | hsdR ← | endonuclease R |
| RA | 4,628,826 | C→T | 8.4% | *215* (TGA→TAA) | ytjB ← | conserved hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AP009048 | 573867–575009 | 575999 | 991–2133 | 12 [11] | [0] 124 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | AP009048 | 1421300 | 1421332 | 33 | 15 [11] | [6] 12 | ydaG/racR | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | AP009048 | 2041775 | 2041814 | 40 | 13 [11] | [10] 12 | yedY | predicted reductase |
| * | * | ÷ | AP009048 | 2827375 | 2827420 | 46 | 15 [11] | [10] 12 | gutM | DNA‑binding transcriptional activator |
| * | * | ÷ | AP009048 | 4213617–4215887 | 4216711–4215889 | 3–3095 | 12 [11] | [11] 12 | rrlE–[rrfE] | rrlE,[rrfE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 20490 | NA (NA) | 5 (0.110) | 4/92 | NT | NA | coding (19/276 nt) | insA | IS1 repressor protein InsA |
| ? | AP009048 | = 279060 | NA (NA) | coding (40/276 nt) | insA | IS1 repressor protein InsA | |||||
| * | ? | AP009048 | 39915 = | 49 (0.980) | 4 (0.090) | 3/92 | NT | 8.3% | coding (472/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | AP009048 | 39938 = | 44 (0.980) | coding (449/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
| * | ? | AP009048 | 70061 = | 42 (0.840) | 58 (1.480) +CGCGTACAACT |
41/80 | NT | 58.9% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 236044 = | 61 (1.220) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | AP009048 | = 71265 | 53 (1.060) | 33 (0.910) +AGGGTCCCTAAGTC |
19/74 | NT | 53.2% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 3464879 = | 27 (0.540) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | AP009048 | 223991 = | NA (NA) | 4 (0.090) | 4/92 | NT | NA | noncoding (221/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224012 = | NA (NA) | noncoding (242/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 224057 = | NA (NA) | 3 (0.060) | 3/100 | NT | NA | noncoding (287/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224084 = | NA (NA) | noncoding (314/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 224090 | NA (NA) | 4 (0.090) | 3/92 | NT | NA | noncoding (320/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 224102 | NA (NA) | noncoding (332/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 225281 | NA (NA) | 5 (0.110) | 5/92 | NT | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 225915 | NA (NA) | 9 (0.210) | 6/86 | NT | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 225926 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 228057 = | NA (NA) | 3 (0.070) | 3/92 | NT | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228076 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 236798 | 50 (1.000) | 25 (1.060) +27 bp |
21/48 | NT | 47.6% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | AP009048 | 4124502 = | 67 (1.340) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | AP009048 | = 251730 | 36 (0.720) | 3 (0.070) | 3/92 | NT | 8.3% | coding (833/1056 nt) | dinB | DNA polymerase IV |
| ? | AP009048 | = 251736 | 34 (0.750) | coding (839/1056 nt) | dinB | DNA polymerase IV | |||||
| * | ? | AP009048 | = 274373 | NA (NA) | 57 (1.140) | 38/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | AP009048 | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | AP009048 | 314453 = | 42 (0.840) | 85 (1.810) +TCA |
49/96 | NT | 81.1% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | AP009048 | = 3920279 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | AP009048 | 314453 = | 42 (0.840) | 52 (1.080) +TC |
40/98 | NT | 71.6% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | AP009048 | 3932928 = | 1 (0.020) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | AP009048 | = 314744 | NA (NA) | 4 (0.090) | 3/88 | NT | NA | coding (239/309 nt) | insE | IS3 element protein |
| ? | AP009048 | = 314761 | NA (NA) | coding (256/309 nt) | insE | IS3 element protein | |||||
| * | ? | AP009048 | = 315707 | NA (NA) | 54 (1.080) | 37/102 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | AP009048 | = 316843 | 46 (0.920) | 4 (0.090) | 3/90 | NT | 8.5% | intergenic (‑483/+107) | ykgA/ykgB | predicted DNA‑binding transcriptional regulator/conserved inner membrane protein |
| ? | AP009048 | = 316852 | 46 (1.040) | intergenic (‑492/+98) | ykgA/ykgB | predicted DNA‑binding transcriptional regulator/conserved inner membrane protein | |||||
| * | ? | AP009048 | 324679 = | 38 (0.760) | 4 (0.080) | 4/98 | NT | 10.3% | intergenic (‑91/+122) | ykgH/betA | predicted inner membrane protein/choline dehydrogenase, a flavoprotein |
| ? | AP009048 | 324704 = | 33 (0.690) | intergenic (‑116/+97) | ykgH/betA | predicted inner membrane protein/choline dehydrogenase, a flavoprotein | |||||
| * | ? | AP009048 | = 380919 | NA (NA) | 3 (0.070) | 3/94 | NT | NA | coding (390/411 nt) coding (22/906 nt) |
insC insD |
IS2 insertion element repressor InsA IS2 insertion element transposase InsAB' |
| ? | AP009048 | = 380937 | NA (NA) | coding (408/411 nt) coding (40/906 nt) |
insC insD |
IS2 insertion element repressor InsA IS2 insertion element transposase InsAB' |
|||||
| * | ? | AP009048 | 381043 = | NA (NA) | 4 (0.090) | 3/88 | NT | NA | coding (146/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | AP009048 | 381065 = | NA (NA) | coding (168/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | AP009048 | 381129 = | NA (NA) | 5 (0.110) | 5/90 | NT | NA | coding (232/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | AP009048 | 381154 = | NA (NA) | coding (257/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | AP009048 | 390073 = | 70 (1.400) | 7 (0.160) | 4/88 | NT | 10.7% | coding (599/1461 nt) | yaiT | hypothetical protein |
| ? | AP009048 | 390095 = | 56 (1.300) | coding (621/1461 nt) | yaiT | hypothetical protein | |||||
| * | ? | AP009048 | 566000 = | NA (NA) | 72 (1.440) | 48/102 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | AP009048 | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | AP009048 | 616993 = | 55 (1.100) | 4 (0.090) | 3/90 | NT | 8.6% | coding (3614/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent |
| ? | AP009048 | 617023 = | 36 (0.820) | coding (3644/3882 nt) | entF | enterobactin synthase multienzyme complex component, ATP‑dependent | |||||
| * | ? | AP009048 | = 663844 | 39 (0.780) | 4 (0.090) | 4/88 | NT | 9.7% | coding (542/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase |
| ? | AP009048 | = 663852 | 41 (0.950) | coding (534/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase | |||||
| * | ? | AP009048 | 713380 = | 34 (0.680) | 52 (1.130) | 37/94 | NT | 63.3% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | AP009048 | = 4125338 | 29 (0.630) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | AP009048 | = 713954 | 49 (0.980) | 81 (1.620) | 46/102 | NT | 61.6% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | AP009048 | 2809398 = | 52 (1.040) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | AP009048 | 820610 = | 57 (1.140) | 3 (0.070) | 3/92 | NT | 5.2% | coding (305/705 nt) | ybhL | predicted inner membrane protein |
| ? | AP009048 | 820629 = | 59 (1.310) | coding (324/705 nt) | ybhL | predicted inner membrane protein | |||||
| * | ? | AP009048 | = 1016506 | 38 (0.760) | 4 (0.090) | 3/88 | NT | 9.7% | coding (387/519 nt) | fabA | beta‑hydroxydecanoyl thioester dehydrase |
| ? | AP009048 | = 1016516 | 42 (0.970) | coding (377/519 nt) | fabA | beta‑hydroxydecanoyl thioester dehydrase | |||||
| * | ? | AP009048 | = 1153172 | 27 (0.540) | 3 (0.060) | 3/98 | NT | 9.2% | intergenic (+191/‑20) | fabG/acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein |
| ? | AP009048 | = 1153204 | 33 (0.690) | coding (13/237 nt) | acpP | acyl carrier protein | |||||
| * | ? | AP009048 | 1209367 = | 15 (0.300) | 26 (0.760) | 22/70 | NT | 75.0% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | 1211196 = | 7 (0.200) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | AP009048 | = 1209382 | 13 (0.260) | 17 (0.500) | 16/70 | NT | 68.1% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | = 1211179 | 7 (0.200) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | AP009048 | 1395670 = | 52 (1.040) | 3 (0.070) | 3/90 | NT | 6.8% | coding (730/1614 nt) | mppA | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| ? | AP009048 | 1395691 = | 36 (0.820) | coding (751/1614 nt) | mppA | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit | |||||
| * | ? | AP009048 | 1481996 = | 31 (0.620) | 11 (0.230) +AT |
10/98 | NT | 38.2% | coding (1145/1758 nt) | ynbC | predicted hydrolase |
| ? | AP009048 | 2564137 = | 6 (0.120) | coding (1404/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
| * | ? | AP009048 | = 1592312 | 50 (1.000) | 4 (0.100) | 3/84 | NT | 8.9% | intergenic (‑62/+256) | yneL/hipA | predicted transcriptional regulator/regulator with hipB |
| ? | AP009048 | = 1592319 | 41 (1.000) | intergenic (‑69/+249) | yneL/hipA | predicted transcriptional regulator/regulator with hipB | |||||
| * | ? | AP009048 | 1942762 = | 32 (0.640) | 3 (0.070) | 3/94 | NT | 9.2% | coding (588/1323 nt) | yebA | predicted peptidase |
| ? | AP009048 | 1942786 = | 30 (0.650) | coding (564/1323 nt) | yebA | predicted peptidase | |||||
| * | ? | AP009048 | 2018571 = | 4 (0.080) | 29 (0.620) | 24/96 | NT | 88.5% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | AP009048 | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | AP009048 | = 2018583 | 2 (0.040) | 46 (0.960) | 33/98 | NT | 96.0% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | AP009048 | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | AP009048 | 2026073 = | 88 (1.760) | 4 (0.090) | 3/96 | NT | 5.6% | intergenic (+258/‑32) | fliR/rcsA | flagellar export pore protein/DNA‑binding transcriptional co‑regulator with RcsB |
| ? | AP009048 | 2026120 = | 53 (1.130) | coding (16/624 nt) | rcsA | DNA‑binding transcriptional co‑regulator with RcsB | |||||
| * | ? | AP009048 | 2028009 = | 56 (1.120) | 3 (0.060) | 3/96 | NT | 5.8% | coding (362/816 nt) | yedP | conserved hypothetical protein |
| ? | AP009048 | 2028031 = | 45 (0.960) | coding (384/816 nt) | yedP | conserved hypothetical protein | |||||
| * | ? | AP009048 | = 2107348 | 46 (0.920) | 3 (0.070) | 3/92 | NT | 7.5% | coding (847/993 nt) | wbbI | conserved hypothetical protein |
| ? | AP009048 | = 2107390 | 32 (0.710) | coding (805/993 nt) | wbbI | conserved hypothetical protein | |||||
| * | ? | AP009048 | = 2173564 | NA (NA) | 97 (1.980) | 53/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | 3920276 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | AP009048 | = 2173565 | NA (NA) | 59 (1.180) | 43/102 | NT | 98.3% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | = 3932931 | 1 (0.020) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | AP009048 | = 2191937 | 61 (1.220) | 4 (0.090) | 3/90 | NT | 6.5% | coding (2308/2481 nt) | yehB | predicted outer membrane protein |
| ? | AP009048 | = 2191956 | 61 (1.380) | coding (2289/2481 nt) | yehB | predicted outer membrane protein | |||||
| * | ? | AP009048 | = 2199347 | 43 (0.860) | 3 (0.060) | 3/96 | NT | 6.8% | coding (1714/2034 nt) | metG | methionyl‑tRNA synthetase |
| ? | AP009048 | = 2199369 | 42 (0.890) | coding (1736/2034 nt) | metG | methionyl‑tRNA synthetase | |||||
| * | ? | AP009048 | 2340750 = | 64 (1.280) | 4 (0.090) | 3/90 | NT | 6.8% | coding (565/1689 nt) | yfaA | hypothetical protein |
| ? | AP009048 | 2340779 = | 54 (1.220) | coding (536/1689 nt) | yfaA | hypothetical protein | |||||
| * | ? | AP009048 | 2373655 = | 40 (0.800) | 3 (0.070) | 3/94 | NT | 6.8% | coding (947/1983 nt) | yfbG | fused UDP‑L‑Ara4N formyltransferase and UDP‑GlcA C‑4'‑decarboxylase |
| ? | AP009048 | 2373675 = | 45 (0.980) | coding (967/1983 nt) | yfbG | fused UDP‑L‑Ara4N formyltransferase and UDP‑GlcA C‑4'‑decarboxylase | |||||
| * | ? | AP009048 | = 2412225 | NA (NA) | 67 (1.340) | 46/102 | NT | 94.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 4 (0.080) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | AP009048 | = 2430401 | 32 (0.640) | 4 (0.090) | 3/88 | NT | 9.7% | coding (279/717 nt) | hisM | histidine/lysine/arginine/ornithine transporter subunit |
| ? | AP009048 | = 2430411 | 47 (1.090) | coding (269/717 nt) | hisM | histidine/lysine/arginine/ornithine transporter subunit | |||||
| * | ? | AP009048 | = 2722868 | 34 (0.680) | 3 (0.070) | 3/88 | NT | 8.7% | coding (34/273 nt) | yfiM | hypothetical protein |
| ? | AP009048 | = 2722875 | 34 (0.790) | coding (41/273 nt) | yfiM | hypothetical protein | |||||
| * | ? | AP009048 | 2727289 = | NA (NA) | 3 (0.060) | 3/96 | NT | NA | noncoding (552/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | AP009048 | 2727320 = | NA (NA) | noncoding (521/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 2728290 | 0 (0.000) | 3 (0.070) | 3/92 | NT | 100% | noncoding (1524/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | AP009048 | = 2728302 | NA (NA) | noncoding (1512/1542 nt) | rrsG | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 2926734 | 38 (0.760) | 5 (0.120) | 4/88 | NT | 12.9% | intergenic (+406/‑151) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter |
| ? | AP009048 | = 2926743 | 35 (0.810) | intergenic (+415/‑142) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter | |||||
| * | ? | AP009048 | = 2944576 | 69 (1.380) | 4 (0.090) | 3/88 | NT | 6.1% | intergenic (‑78/+161) | ygdL/mltA | conserved hypothetical protein/membrane‑bound lytic murein transglycosylase A |
| ? | AP009048 | 3866180 = | 64 (1.480) | intergenic (‑189/+41) | mtlD/mtlA | mannitol‑1‑phosphate dehydrogenase, NAD(P)‑binding/fused mannitol‑specific PTS enzyme IIABC components | |||||
| * | ? | AP009048 | = 2970629 | 49 (0.980) | 4 (0.090) | 3/94 | NT | 8.1% | coding (377/1041 nt) | tas | predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase |
| ? | AP009048 | = 2970640 | 46 (1.000) | coding (388/1041 nt) | tas | predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase | |||||
| * | ? | AP009048 | = 3271909 | 41 (0.820) | 3 (0.070) | 3/94 | NT | 6.4% | coding (704/891 nt) | garR | tartronate semialdehyde reductase |
| ? | AP009048 | = 3271923 | 50 (1.090) | coding (690/891 nt) | garR | tartronate semialdehyde reductase | |||||
| * | ? | AP009048 | 3389452 = | 49 (0.980) | 3 (0.060) | 3/98 | NT | 5.5% | coding (78/930 nt) | aaeR | predicted DNA‑binding transcriptional regulator, efflux system |
| ? | AP009048 | 3389477 = | 57 (1.190) | coding (103/930 nt) | aaeR | predicted DNA‑binding transcriptional regulator, efflux system | |||||
| * | ? | AP009048 | 3589856 = | 40 (0.800) | 3 (0.070) | 3/86 | NT | 8.9% | intergenic (‑141/‑223) | polA/yihG | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease/predicted endonuclease |
| ? | AP009048 | 3589885 = | 28 (0.660) | intergenic (‑170/‑194) | polA/yihG | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease/predicted endonuclease | |||||
| * | ? | AP009048 | 3628496 = | 53 (1.060) | 3 (0.060) | 3/96 | NT | 5.1% | coding (429/621 nt) | rhtC | threonine efflux system |
| ? | AP009048 | 3628521 = | 62 (1.320) | coding (404/621 nt) | rhtC | threonine efflux system | |||||
| * | ? | AP009048 | 3748797 = | 6 (0.120) | 59 (1.180) | 44/102 | NT | 90.8% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | AP009048 | 4056220 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | AP009048 | = 3750590 | 0 (0.000) | 83 (1.800) | 48/94 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | AP009048 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
| * | ? | AP009048 | = 3931693 | 55 (1.100) | 3 (0.070) | 3/92 | NT | 5.7% | intergenic (+62/‑30) | eptB/proK | predicted metal dependent hydrolase/tRNA‑Pro |
| ? | AP009048 | = 3931711 | 50 (1.110) | intergenic (+80/‑12) | eptB/proK | predicted metal dependent hydrolase/tRNA‑Pro | |||||
| * | ? | AP009048 | 4058809 = | 56 (1.120) | 3 (0.070) | 3/90 | NT | 5.7% | coding (469/489 nt) | yhhY | predicted acetyltransferase |
| ? | AP009048 | 4058827 = | 50 (1.130) | coding (451/489 nt) | yhhY | predicted acetyltransferase | |||||
| * | ? | AP009048 | = 4366250 | 44 (0.880) | 3 (0.070) | 3/94 | NT | 7.4% | coding (363/1539 nt) | cadC | DNA‑binding transcriptional activator |
| ? | AP009048 | = 4366277 | 34 (0.740) | coding (336/1539 nt) | cadC | DNA‑binding transcriptional activator | |||||
| * | ? | AP009048 | 4481819 = | 44 (0.880) | 3 (0.070) | 3/92 | NT | 8.3% | coding (1703/1815 nt) | yjgL | hypothetical protein |
| ? | AP009048 | 4481841 = | 27 (0.600) | coding (1725/1815 nt) | yjgL | hypothetical protein | |||||
| * | ? | AP009048 | = 4492052 | 60 (1.200) | 3 (0.070) | 3/92 | NT | 5.1% | coding (55/1083 nt) | yjgQ | conserved inner membrane protein |
| ? | AP009048 | = 4492073 | 57 (1.260) | coding (76/1083 nt) | yjgQ | conserved inner membrane protein | |||||
| * | ? | AP009048 | = 4507732 | 61 (1.220) | 3 (0.060) | 3/98 | NT | 5.2% | coding (380/1329 nt) | insG | IS4 predicted transposase |
| ? | AP009048 | = 4507756 | 51 (1.060) | coding (356/1329 nt) | insG | IS4 predicted transposase | |||||
| * | ? | AP009048 | 4541673 = | 49 (0.980) | 5 (0.110) | 3/92 | NT | 10.0% | coding (602/981 nt) | yjhS | conserved hypothetical protein |
| ? | AP009048 | 4541697 = | 46 (1.020) | coding (578/981 nt) | yjhS | conserved hypothetical protein | |||||
| * | ? | AP009048 | 4547362 = | 20 (0.400) | 7 (0.170) | 6/84 | NT | 25.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | 4547676 = | 25 (0.610) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | AP009048 | = 4547370 | 19 (0.380) | 6 (0.150) | 5/84 | NT | 22.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547666 | 25 (0.610) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | AP009048 | 4644532 = | 33 (0.660) | 4 (0.090) | 3/90 | NT | 12.5% | coding (455/717 nt) | arcA | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
| ? | AP009048 | 4644552 = | 27 (0.610) | coding (435/717 nt) | arcA | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA | |||||