breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		[crl]	[crl]
RA	1,413,542	A→T	Y67N (TAT→AAT)	ydaC ←	DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein
RA	1,793,898	Δ1 bp	coding (212/552 nt)	btuE ←	glutathione peroxidase
MC JC	1,978,503	Δ776 bp		insB1–insA	insB1, insA
RA	2,093,040	G→A	A215T (GCT→ACT)	hisC →	histidinol‑phosphate aminotransferase
RA	3,993,269	T→G	F706L (TTT→TTG)	cyaA →	adenylate cyclase

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	195 (1.110)	129/284	0.0	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
*	?	NC_000913	3583427 =	NA (NA)	351 (1.950)	174/292	0.0	61.7%	intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA
	?	NC_000913	3722341 =	218 (1.210)					coding (2056/2070 nt)	glyS	glycine tRNA synthetase, beta subunit
*	?	NC_000913	= 3584192	NA (NA)	336 (1.890)	164/288	0.0	67.8%	intergenic (+13/‑3)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E
	?	NC_000913	= 3836822	162 (0.900)					intergenic (+267/‑130)	yicT/setC	pseudogene/putative arabinose efflux transporter