Fri Jun 15 20:54:32 2018

breseq -p -j 3 --polymorphism-frequency-cutoff 0.025 -r CP009273_1.gb -o A11_F029_R2_F25_I0 A11_F029_R2_F25_I0_S2195_L001_R2_001.good.fq.gz A11_F029_R2_F25_I0_S2195_L001_R1_001.good.fq.gz