mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 5,439 | A→C | 13.6% | H69P (CAC→CCC) | Y75_RS00030 → | DUF2502 domain‑containing protein |
| RA | 12,484 | C→A | 21.1% | Q108K (CAG→AAG) | dnaK → | molecular chaperone DnaK |
| RA | 53,165 | G→A | 27.5% | V84V (GTC→GTT) | pdxA ← | 4‑hydroxythreonine‑4‑phosphate dehydrogenase PdxA |
| RA | 82,766 | A→G | 9.3% | L255P (CTC→CCC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 210,994 | T→C | 31.0% | V439A (GTC→GCC) | ldcC → | lysine decarboxylase LdcC |
| RA | 226,042 | T→C | 24.7% | noncoding (293/2930 nt) | Y75_RS01035 → | 23S ribosomal RNA |
| RA | 228,688 | Δ1 bp | 100% | intergenic (+9/‑70) | Y75_RS01035 → / → rrf | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 249,538 | T→G | 20.9% | H187P (CAC→CCC) | flhA ← | flagellar type III secretion system protein FlhA |
| RA | 249,587 | T→G | 13.2% | T171P (ACC→CCC) | flhA ← | flagellar type III secretion system protein FlhA |
| RA | 282,321 | T→C | 10.9% | S274P (TCC→CCC) | yagE → | 2‑keto‑3‑deoxygluconate aldolase |
| RA | 284,748 | A→G | 10.0% | I44V (ATT→GTT) | Y75_RS01395 → | MFS transporter |
| RA | 346,895 | G→C | 10.6% | A258G (GCG→GGG) | prpR ← | propionate catabolism operon regulatory protein PrpR |
| RA | 359,586 | T→G | 16.4% | V133G (GTG→GGG) | cynX → | cyanate transporter CynX |
| RA | 380,685 | G→A | 9.8% | R52R (CGG→CGA) | Y75_RS01860 → | IS3‑like element IS2 family transposase |
| RA | 380,686 | C→T | 10.2% | Q53* (CAA→TAA) | Y75_RS01860 → | IS3‑like element IS2 family transposase |
| RA | 386,965 | A→G | 26.2% | E257E (GAA→GAG) | tauC → | taurine ABC transporter permease TauC |
| RA | 387,473 | A→G | 15.2% | E152G (GAG→GGG) | tauD → | taurine dioxygenase |
| RA | 411,312 | T→C | 17.1% | M132V (ATG→GTG) | araJ ← | MFS transporter AraJ |
| RA | 421,455 | A→T | 10.6% | I416F (ATC→TTC) | proY → | proline‑specific permease ProY |
| RA | 432,873 | T→G | 27.3% | G65G (GGT→GGG) | ribD → | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase RibD |
| RA | 442,627 | T→C | 9.5% | E80G (GAG→GGG) | yajL ← | protein deglycase YajL |
| RA | 449,374 | T→C | 27.4% | E164E (GAA→GAG) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 471,229 | A→G | 11.2% | E457G (GAG→GGG) | Y75_RS02310 → | SmdB family multidrug efflux ABC transporter permease/ATP‑binding protein |
| RA | 479,721 | T→C | 25.1% | K71R (AAG→AGG) | tomB ← | Hha toxicity modulator TomB |
| RA | 502,111 | T→A | 12.4% | I118F (ATC→TTC) | Y75_RS02460 ← | Kef family K(+) transporter |
| RA | 525,193 | A→G | 23.8% | A903A (GCA→GCG) | Y75_RS02555 → | rhs element protein RhsD |
| RA | 539,770 | C→T | 8.0% | intergenic (+38/‑19) | allB → / → Y75_RS02625 | allantoinase AllB/uracil/xanthine transporter |
| RA | 539,835 | A→T | 8.1% | Q16L (CAG→CTG) | Y75_RS02625 → | uracil/xanthine transporter |
| RA | 547,694 | A→G | 100% | E38E (GAA→GAG) | Y75_RS02655 → | hypothetical protein |
| RA | 547,831:1 | +G | 100% | coding (251/261 nt) | Y75_RS02655 → | hypothetical protein |
| RA | 550,454 | A→G | 11.8% | S265G (AGT→GGT) | Y75_RS02670 → | carbamate kinase |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD |
| RA | 582,170 | A→G | 22.8% | pseudogene (73/261 nt) | Y75_RS02905 → | tail fiber assembly protein |
| RA | 591,407 | A→G | 26.8% | I332T (ATC→ACC) | nrfB ← | phage adsorption protein NrfB |
| RA | 629,331 | T→G | 9.8% | V72G (GTG→GGG) | cstA → | carbon starvation protein CstA |
| RA | 629,410 | A→G | 7.0% | G98G (GGA→GGG) | cstA → | carbon starvation protein CstA |
| RA | 632,320 | T→C | 25.5% | T127T (ACA→ACG) | hcxA ← | hydroxycarboxylate dehydrogenase HcxA |
| RA | 642,258 | T→C | 18.4% | G316G (GGT→GGC) | Y75_RS03155 → | glutathione‑dependent formaldehyde dehydrogenase |
| MC JC | 654,214 | Δ1,199 bp | 100% | Y75_RS03225–[dcuC] | Y75_RS03225, [dcuC] | |
| RA | 801,248 | A→G | 29.6% | H23R (CAT→CGT) | Y75_RS04015 → | 4‑oxalomesaconate tautomerase |
| RA | 837,020 | T→C | 12.8% | L83P (CTC→CCC) | Y75_RS04175 → | hydroxycarboxylate dehydrogenase HcXB |
| RA | 864,182 | A→G | 10.3% | D40G (GAT→GGT) | fsa → | fructose‑6‑phosphate aldolase |
| RA | 916,131 | G→A | 21.9% | A113A (GCC→GCT) | aqpZ ← | aquaporin Z |
| RA | 926,681 | A→T | 66.5% | L62Q (CTG→CAG) | infA ← | translation initiation factor IF‑1 |
| RA | 954,782 | T→A | 12.5% | Y36F (TAT→TTT) | focA ← | formate transporter FocA |
| RA | 954,817 | G→A | 10.3% | V24V (GTC→GTT) | focA ← | formate transporter FocA |
| RA | 1,037,257 | T→C | 11.1% | C29C (TGT→TGC) | Y75_RS05085 → | hydrogenase expression/formation protein |
| RA | 1,042,668 | A→C | 5.7% | S655R (AGT→AGG) | etk ← | tyrosine‑protein kinase |
| RA | 1,065,700 | C→T | 100% | R415C (CGT→TGT) | Y75_RS05220 → | YccE family protein |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | Y75_RS05355 → | GGDEF domain‑containing protein |
| RA | 1,116,546 | T→A | 9.7% | V174V (GTA→GTT) | mdtG ← | multidrug efflux MFS transporter MdtG |
| RA | 1,146,870 | T→G | 12.9% | G118G (GGT→GGG) | rluC → | 23S rRNA pseudouridine(955/2504/2580) synthase RluC |
| RA | 1,158,744 | A→G | 35.4% | T131A (ACC→GCC) | Y75_RS05755 → | metal‑dependent hydrolase |
| RA | 1,163,039 | T→G | 10.2% | L30F (TTA→TTC) | fhuE ← | ferric‑rhodotorulic acid/ferric‑coprogen receptor FhuE |
| RA | 1,239,439 | A→C | 9.9% | T98P (ACC→CCC) | Y75_RS06220 → | D‑amino acid dehydrogenase |
| RA | 1,256,357 | T→C | 12.1% | G391G (GGA→GGG) | Y75_RS06285 ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | 1,303,712 | A→G | 100% | S273G (AGC→GGC) | oppA → | oligopeptide ABC transporter substrate‑binding protein OppA |
| RA | 1,305,677 | A→G | 8.8% | I44V (ATA→GTA) | oppC → | oligopeptide ABC transporter permease OppC |
| RA | 1,324,092 | C→T | 11.7% | S190N (AGC→AAC) | trpE ← | anthranilate synthase component I |
| JC | 1,328,313 | Δ36 bp | 12.0% | coding (1854‑1889/1896 nt) | Y75_RS06660 → | DUF2207 domain‑containing protein |
| RA | 1,335,007 | C→T | 24.9% | A749V (GCA→GTA) | topA → | type I DNA topoisomerase |
| RA | 1,349,026 | C→T | 29.7% | R534H (CGT→CAT) | rnb ← | exoribonuclease II |
| RA | 1,350,440 | C→T | 31.8% | V63M (GTG→ATG) | rnb ← | exoribonuclease II |
| RA | 1,378,785 | A→C | 12.9% | S80S (TCA→TCC) | Y75_RS06935 → | Gfo/Idh/MocA family oxidoreductase |
| RA | 1,379,403 | T→A | 8.9% | D286E (GAT→GAA) | Y75_RS06935 → | Gfo/Idh/MocA family oxidoreductase |
| RA | 1,392,432 | G→A | 23.8% | intergenic (‑120/+7) | mpaA ← / ← Y75_RS06995 | murein tripeptide amidase MpaA/NAD‑dependent dehydratase |
| RA | 1,406,309 | A→G | 21.7% | intergenic (‑30/‑146) | Y75_RS07065 ← / → Y75_RS07070 | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA/LysR family transcriptional regulator |
| MC JC | 1,413,639 | Δ23,060 bp | 100% | [ttcA]–Y75_RS24865 | 33 genes [ttcA], Y75_RS23540, xisR, rcbA, ralR, recT, recE, Y75_RS07140, Y75_RS07145, kilR, Y75_RS07155, Y75_RS07160, racR, ydaS, Y75_RS07175, Y75_RS07180, Y75_RS07185, Y75_RS07190, rzoD, Y75_RS07200, Y75_RS07205, Y75_RS07210, Y75_RS07215, Y75_RS07220, Y75_RS07225, Y75_RS07230, Y75_RS07235, Y75_RS23570, Y75_RS07255, Y75_RS07260, ydfK, Y75_RS24860, Y75_RS24865 |
|
| RA | 1,440,143 | A→G | 26.6% | F786L (TTC→CTC) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,447,718 | T→G | 10.5% | V42G (GTT→GGT) | Y75_RS07310 → | YdbL family protein |
| RA | 1,513,839 | A→G | 25.5% | T158A (ACG→GCG) | Y75_RS07610 → | ABC transporter substrate‑binding protein |
| RA | 1,515,716 | A→T | 9.4% | T58S (ACT→TCT) | Y75_RS07620 → | ABC transporter permease |
| RA | 1,516,725 | A→G | 21.9% | T84A (ACG→GCG) | Y75_RS07625 → | ABC transporter permease |
| RA | 1,521,798 | G→A | 11.0% | intergenic (+20/‑178) | curA → / → Y75_RS07665 | NADPH‑dependent curcumin/dihydrocurcumin reductase/DNA‑binding transcriptional regulator McbR |
| RA | 1,530,091 | A→G | 27.0% | Y80C (TAC→TGC) | Y75_RS07695 → | RHS repeat protein |
| RA | 1,535,967 | A→T | 10.6% | E77V (GAG→GTG) | nhoA → | N‑hydroxyarylamine O‑acetyltransferase |
| RA | 1,562,499 | T→A | 15.9% | I49F (ATC→TTC) | Y75_RS07840 ← | ABC transporter permease |
| RA | 1,569,576 | T→C | 31.4% | Y321C (TAC→TGC) | Y75_RS07865 ← | glycoside hydrolase family 10 protein |
| RA | 1,578,891 | A→G | 20.8% | V148A (GTG→GCG) | Y75_RS07890 ← | TonB‑dependent receptor plug domain‑containing protein |
| RA | 1,600,253 | C→T | 34.9% | intergenic (‑453/+78) | Y75_RS07965 ← / ← lsrK | autotransporter barrel domain‑containing lipoprotein/autoinducer‑2 kinase |
| RA | 1,613,633 | C→A | 8.2% | intergenic (‑65/+47) | Y75_RS08030 ← / ← Y75_RS08035 | GGDEF domain‑containing protein/DUF4186 domain‑containing protein |
| RA | 1,629,848 | A→G | 26.8% | A206A (GCA→GCG) | ydfG → | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
| RA | 1,648,781 | T→C | 24.4% | intergenic (+330/+107) | Y75_RS08260 → / ← Y75_RS08265 | protein FlxA/hypothetical protein |
| RA | 1,667,148 | T→C | 25.1% | S52S (AGT→AGC) | clcB → | voltage‑gated ClC‑type chloride channel ClcB |
| RA | 1,668,443 | A→G | 27.0% | L164P (CTG→CCG) | bioD ← | ATP‑dependent dethiobiotin synthetase BioD |
| RA | 1,718,276 | A→G | 26.5% | F221L (TTT→CTT) | tyrS ← | tyrosine‑‑tRNA ligase |
| RA | 1,739,298 | A→G | 100% | intergenic (‑39/‑260) | ynhF ← / → purR | stress response protein YnhF/HTH‑type transcriptional repressor PurR |
| RA | 1,756,553 | G→A | 20.9% | intergenic (‑362/+93) | Y75_RS08815 ← / ← fumD | ferredoxin‑like protein/fumarate hydratase FumD |
| RA | 1,757,345 | G→A | 32.1% | intergenic (‑490/‑67) | fumD ← / → Y75_RS08825 | fumarate hydratase FumD/pyruvate kinase PykF |
| RA | 1,775,399 | T→C | 23.9% | Y392H (TAT→CAT) | Y75_RS08905 → | MFS transporter |
| RA | 1,802,255 | T→C | 28.7% | Q33R (CAG→CGG) | infC ← | translation initiation factor IF‑3 |
| RA | 1,813,070 | T→C | 25.3% | G141G (GGT→GGC) | Y75_RS09105 → | cystine/sulfocysteine:cation symporter |
| RA | 1,823,202 | A→C | 68.0% | A44A (GCT→GCG) | chbB ← | PTS N,N'‑diacetylchitobiose transporter subunit IIB |
| RA | 1,824,414 | A→G | 20.9% | V81V (GTA→GTG) | nadE → | ammonia‑dependent NAD(+) synthetase |
| RA | 1,825,992 | C→A | 14.7% | T255K (ACA→AAA) | cho → | excinuclease Cho |
| RA | 1,845,615 | T→C | 29.5% | H324R (CAC→CGC) | Y75_RS09275 ← | DUF1266 domain‑containing protein |
| RA | 1,858,002 | T→C | 18.1% | D214G (GAC→GGC) | Y75_RS09335 ← | carbohydrate kinase family protein |
| RA | 1,859,322 | A→G | 25.3% | G54G (GGT→GGC) | Y75_RS09340 ← | ketose‑bisphosphate aldolase |
| RA | 1,889,234 | A→C | 7.8% | Y154D (TAT→GAT) | rnd ← | ribonuclease D |
| RA | 1,905,809 | T→C | 25.5% | R67R (CGT→CGC) | Y75_RS09580 → | PTS mannose transporter subunit IID |
| RA | 1,908,490 | A→C | 13.0% | G95G (GGT→GGG) | rlmA ← | 23S rRNA (guanine(745)‑N(1))‑methyltransferase |
| RA | 1,920,690 | T→G | 15.0% | G489G (GGT→GGG) | yebT → | lipid‑binding membrane homeostasis protein YebT |
| RA | 1,928,151 | G→A | 24.6% | L106L (TTG→TTA) | exoX → | exodeoxyribonuclease X |
| RA | 1,930,726 | C→T | 5.1% | intergenic (‑173/+36) | ptrB ← / ← Y75_RS09735 | oligopeptidase B/tellurite resistance TerB family protein |
| RA | 1,932,029 | T→C | 27.1% | T26A (ACC→GCC) | yebF ← | protein YebF |
| RA | 1,951,939 | T→C | 32.5% | T100A (ACT→GCT) | aspS ← | aspartate‑‑tRNA ligase |
| RA | 1,986,282 | T→G | 15.0% | T309P (ACC→CCC) | Y75_RS10005 ← | arabinose ABC transporter ATP binding protein AraG |
| RA | 1,991,081 | T→C | 18.5% | F77L (TTT→CTT) | ftnA → | non‑heme ferritin |
| RA | 2,022,089 | T→C | 26.6% | V112A (GTA→GCA) | fliL → | flagellar basal body‑associated protein FliL |
| RA | 2,036,246 | A→G | 20.8% | pseudogene (59/1193 nt) | Y75_RS24930 → | porin |
| RA | 2,042,264 | T→C | 17.2% | L217P (CTC→CCC) | msrP → | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| RA | 2,042,280 | A→G | 20.8% | V222V (GTA→GTG) | msrP → | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| RA | 2,054,843 | T→C | 26.1% | pseudogene (623/1053 nt) | Y75_RS10400 ← | glycosyltransferase family 9 protein |
| RA | 2,074,477 | A→G | 20.8% | T268A (ACT→GCT) | ag43 → | autotransporter adhesin Ag43 |
| RA | 2,081,558 | C→T | 32.8% | intergenic (‑60/+112) | Y75_RS10545 ← / ← Y75_RS10550 | DUF496 family protein/FUSC family protein |
| RA | 2,128,340 | T→C | 22.9% | D7G (GAC→GGC) | Y75_RS10765 ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,135,997 | G→A | 23.1% | P598L (CCG→CTG) | wzc ← | tyrosine‑protein kinase Wzc |
| RA | 2,147,193 | T→G | 8.4% | G597G (GGT→GGG) | Y75_RS10845 → | diguanylate cyclase |
| RA | 2,152,044 | A→C | 26.5% | V360G (GTG→GGG) | yegI ← | protein kinase YegI |
| RA | 2,153,826 | G→T | 33.9% | intergenic (+43/+22) | Y75_RS10870 → / ← pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| RA | 2,153,827 | T→C | 38.1% | intergenic (+44/+21) | Y75_RS10870 → / ← pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | Y75_RS10980–[gatA] | Y75_RS10980, [gatA] | |
| RA | 2,199,942 | T→C | 32.7% | pseudogene (135/3796 nt) | Y75_RS24960 → | WGR and DUF4132 domain‑containing protein |
| RA | 2,202,338 | A→G | 7.6% | pseudogene (2531/3796 nt) | Y75_RS24960 → | WGR and DUF4132 domain‑containing protein |
| RA | 2,212,091 | A→G | 17.6% | D264G (GAC→GGC) | Y75_RS11125 → | VWA domain‑containing protein |
| RA | 2,213,155 | T→C | 9.8% | pseudogene (722/2001 nt) | Y75_RS11130 → | dipeptidase |
| RA | 2,237,845 | G→A | 30.6% | G160D (GGT→GAT) | Y75_RS11255 → | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreT |
| RA | 2,248,798 | G→A | 7.4% | R436C (CGT→TGT) | cirA ← | catecholate siderophore receptor CirA |
| RA | 2,258,308 | A→G | 23.3% | I71I (ATT→ATC) | rihB ← | ribosylpyrimidine nucleosidase |
| RA | 2,315,451 | A→C | 15.4% | G211G (GGT→GGG) | ompC ← | porin OmpC |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | Y75_RS11650–[rcsC] | Y75_RS11650, Y75_RS11650, [rcsC] | |
| RA | 2,328,463 | G→A | 25.8% | G116D (GGT→GAT) | atoD → | acetate CoA‑transferase subunit alpha |
| RA | 2,355,566 | G→A | 23.0% | A39V (GCC→GTC) | glpQ ← | glycerophosphodiester phosphodiesterase |
| RA | 2,372,009 | A→C | 19.4% | H90P (CAC→CCC) | arnC → | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| RA | 2,372,048 | T→C | 20.8% | L103P (CTC→CCC) | arnC → | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| RA | 2,471,949 | T→C | 19.8% | intergenic (+120/‑42) | Y75_RS12330 → / → intS | tRNA‑Arg/prophage integrase IntS |
| RA | 2,472,663 | A→G | 25.0% | T225A (ACC→GCC) | intS → | prophage integrase IntS |
| RA | 2,509,498 | A→G | 11.6% | I145T (ATC→ACC) | ptsP ← | phosphoenolpyruvate‑‑protein phosphotransferase |
| RA | 2,512,955 | G→A | 23.9% | P129L (CCG→CTG) | Y75_RS12530 ← | PTS fructose transporter subunit IIC |
| RA | 2,527,901 | T→A | 5.0% | D8V (GAT→GTT) | xapR ← | DNA‑binding transcriptional regulator XapR |
| RA | 2,579,066 | G→A | 24.2% | A259T (GCG→ACG) | tkt → | transketolase |
| RA | 2,606,887 | A→G | 21.4% | M439V (ATG→GTG) | hyfF → | hydrogenase 4 subunit F |
| RA | 2,645,910 | T→C | 24.7% | A24A (GCA→GCG) | pbpC ← | peptidoglycan glycosyltransferase PbpC |
| RA | 2,647,907 | T→C | 28.5% | S1013G (AGT→GGT) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,660,496 | A→T | 73.9% | C98S (TGC→AGC) | iscR ← | Fe‑S cluster assembly transcriptional regulator IscR |
| RA | 2,664,592 | A→G | 8.2% | T168A (ACG→GCG) | csiE → | stationary phase inducible protein CsiE |
| RA | 2,673,614 | T→C | 21.1% | G279G (GGA→GGG) | Y75_RS13315 ← | alcohol dehydrogenase catalytic domain‑containing protein |
| RA | 2,676,704 | A→C | 12.2% | V105G (GTG→GGG) | Y75_RS13325 ← | sugar ABC transporter ATP‑binding protein |
| RA | 2,746,219 | A→G | 21.2% | V78A (GTC→GCC) | ffh ← | signal recognition particle protein |
| RA | 2,763,433 | T→C | 22.7% | N126S (AAC→AGC) | Y75_RS13760 ← | anti‑bacteriophage protein AbpA |
| RA | 2,789,650 | T→C | 18.7% | L338P (CTC→CCC) | Y75_RS13885 → | L‑2‑hydroxyglutarate oxidase |
| RA | 2,792,331 | T→G | 9.5% | V314G (GTG→GGG) | Y75_RS13895 → | 4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| RA | 2,793,721 | T→C | 30.3% | G271G (GGT→GGC) | gabP → | GABA permease |
| RA | 2,813,572 | T→C | 25.2% | E508E (GAA→GAG) | gshA ← | glutamate‑‑cysteine ligase |
| RA | 2,813,659 | C→T | 24.8% | P479P (CCG→CCA) | gshA ← | glutamate‑‑cysteine ligase |
| RA | 2,837,365 | T→C | 27.6% | T187A (ACC→GCC) | Y75_RS14155 ← | DNA‑binding transcriptional regulator AscG |
| RA | 2,855,834 | T→A | 22.3% | L29Q (CTG→CAG) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,866,109 | C→A | 100% | pseudogene (99/993 nt) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,877,551 | A→G | 25.8% | L293P (CTT→CCT) | cas1e ← | type I‑E CRISPR‑associated endonuclease Cas1 |
| RA | 2,906,975 | C→G | 100% | D450H (GAC→CAC) | pyrG ← | CTP synthase (glutamine hydrolyzing) |
| RA | 2,908,235 | C→A | 13.8% | E30* (GAA→TAA) | pyrG ← | CTP synthase (glutamine hydrolyzing) |
| JC | 2,910,136 | Δ12 bp | 34.3% | coding (2161‑2172/2235 nt) | Y75_RS14515 ← | GTP pyrophosphokinase |
| RA | 2,910,944 | A→T | 70.5% | L455Q (CTG→CAG) | Y75_RS14515 ← | GTP pyrophosphokinase |
| RA | 2,962,177 | C→T | 22.2% | G66S (GGT→AGT) | Y75_RS14725 ← | prepilin peptidase‑dependent protein |
| RA | 2,963,338 | T→C | 10.0% | K158K (AAA→AAG) | thyA ← | thymidylate synthase |
| RA | 2,973,749 | T→G | 10.7% | T308P (ACT→CCT) | aas ← | bifunctional acyl‑ACP‑‑phospholipid O‑acyltransferase/long‑chain‑fatty‑acid‑‑ACP ligase |
| RA | 3,013,385 | A→G | 32.0% | V110A (GTG→GCG) | yqeC ← | putative selenium‑dependent hydroxylase accessory protein YqeC |
| RA | 3,131,026 | G→C | 9.8% | G13G (GGC→GGG) | Y75_RS15535 ← | lipopolysaccharide biosynthesis protein |
| RA | 3,134,422 | G→T | 8.3% | G202G (GGC→GGA) | pitB ← | inorganic phosphate transporter PitB |
| RA | 3,184,681 | A→G | 6.0% | intergenic (+60/‑117) | Y75_RS15835 → / → Y75_RS15845 | fimbrial‑like protein/IS3‑like element IS2 family transposase |
| RA | 3,205,094 | G→A | 19.1% | intergenic (‑182/‑25) | ttdR ← / → ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,127 | C→G | 10.6% | S3R (AGC→AGG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,133 | T→A | 19.0% | S5R (AGT→AGA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,140 | C→A | 14.4% | Q8K (CAA→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,143 | C→A | 13.7% | Q9K (CAG→AAG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,162 | C→A | 14.2% | T15K (ACA→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,206,583 | G→A | 21.1% | R186H (CGC→CAC) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | Y75_RS16205–[tdcD] | Y75_RS16205, [tdcD] | |
| RA | 3,305,174 | T→G | 6.0% | T167P (ACC→CCC) | mtr ← | tryptophan permease |
| RA | 3,306,710 | T→C | 25.7% | T336A (ACC→GCC) | Y75_RS16445 ← | ATP‑dependent RNA helicase DeaD |
| RA | 3,329,674 | T→G | 12.5% | V286G (GTA→GGA) | dacB → | serine‑type D‑Ala‑D‑Ala carboxypeptidase |
| RA | 3,331,036 | T→A | 10.5% | T192S (ACC→TCC) | cgtA ← | Obg family GTPase CgtA |
| RA | 3,336,758 | C→T | 36.8% | intergenic (‑100/+60) | ibaG ← / ← mlaB | BolA family iron metabolism protein IbaG/lipid asymmetry maintenance protein MlaB |
| RA | 3,365,322 | G→A | 21.3% | pseudogene (283/369 nt) | Y75_RS16720 → | hypothetical protein |
| RA | 3,372,994 | T→C | 25.1% | K146K (AAA→AAG) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,441,668 | T→G | 13.0% | C363G (TGC→GGC) | thiC → | phosphomethylpyrimidine synthase ThiC |
| RA | 3,450,775 | T→C | 24.8% | Q186R (CAG→CGG) | rpoC ← | DNA‑directed RNA polymerase subunit beta' |
| RA | 3,485,352 | A→C | 26.4% | A590A (GCA→GCC) | ppc → | phosphoenolpyruvate carboxylase |
| RA | 3,510,452 | T→G | 14.0% | G194G (GGT→GGG) | priA → | primosomal protein N' |
| RA | 3,521,463 | A→G | 10.0% | E121G (GAG→GGG) | glpX → | class II fructose‑bisphosphatase |
| RA | 3,602,373 | T→C | 23.0% | A388A (GCA→GCG) | trkH ← | Trk system potassium transporter TrkH |
| RA | 3,606,626 | T→C | 26.6% | L306P (CTC→CCC) | fadB → | fatty acid oxidation complex subunit alpha FadB |
| RA | 3,616,272 | G→T | 9.9% | Q62K (CAA→AAA) | ubiB ← | ubiquinone biosynthesis regulatory protein kinase UbiB |
| RA | 3,620,608 | A→C | 11.7% | T33P (ACC→CCC) | Y75_RS17970 → | dienelactone hydrolase family protein |
| RA | 3,645,110 | A→T | 100% | L140Q (CTG→CAG) | cyaA ← | class I adenylate cyclase |
| RA | 3,645,220 | G→A | 30.4% | S103S (AGC→AGT) | cyaA ← | class I adenylate cyclase |
| RA | 3,648,106 | T→C | 22.0% | S164S (AGT→AGC) | hemX → | uroporphyrinogen‑III C‑methyltransferase |
| RA | 3,648,353 | C→A | 9.4% | Q247K (CAA→AAA) | hemX → | uroporphyrinogen‑III C‑methyltransferase |
| RA | 3,656,455 | C→T | 100% | V91I (GTT→ATT) | rffM ← | lipopolysaccharide N‑acetylmannosaminouronosyltransferase |
| RA | 3,690,546 | T→C | 28.6% | noncoding (2441/2925 nt) | Y75_RS18325 ← | 23S ribosomal RNA |
| RA | 3,708,445 | A→G | 30.6% | K456K (AAA→AAG) | viaA → | ATPase RavA stimulator ViaA |
| RA | 3,715,545 | T→G | 63.5% | G18G (GGT→GGG) | atpE → | F0F1 ATP synthase subunit C |
| RA | 3,741,125 | A→G | 23.0% | M352V (ATG→GTG) | Y75_RS18545 → | adenine permease AdeP |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | Y75_RS18560–Y75_RS18560 | Y75_RS18560, Y75_RS18560 | |
| RA | 3,745,991 | T→C | 33.8% | I138V (ATC→GTC) | mdtL ← | multidrug efflux MFS transporter MdtL |
| MC JC | 3,746,911 | Δ1,199 bp | 100% | Y75_RS18585–[tnaB] | Y75_RS18585, [tnaB] | |
| MC JC | 3,750,591 | Δ1,199 bp | 100% | Y75_RS18600 | Y75_RS18600 | |
| RA | 3,777,745 | A→T | 31.0% | I312F (ATT→TTT) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,754 | A→C | 32.5% | T315P (ACC→CCC) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,790,458 | G→A | 19.8% | W60* (TGG→TGA) | uhpB → | signal transduction histidine‑protein kinase/phosphatase UhpB |
| RA | 3,797,639 | C→G | 6.4% | G338G (GGC→GGG) | Y75_RS18845 → | adenine permease AdeQ |
| RA | 3,810,061 | C→T | 13.2% | intergenic (‑103/+18) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,814,831 | A→C | 7.8% | G125G (GGT→GGG) | recG ← | ATP‑dependent DNA helicase RecG |
| RA | 3,820,133 | G→A | 31.2% | A297T (GCA→ACA) | ligB → | NAD‑dependent DNA ligase LigB |
| RA | 3,831,076 | A→G | 34.3% | V267A (GTA→GCA) | waaA ← | 3‑deoxy‑D‑manno‑octulosonic acid transferase |
| RA | 3,857,502 | T→G | 18.9% | V250G (GTG→GGG) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,894,855 | T→G | 13.0% | T253P (ACA→CCA) | yiaN ← | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| RA | 3,908,726 | G→T | 14.9% | Q187K (CAA→AAA) | Y75_RS19370 ← | D‑xylose ABC transporter substrate‑binding protein |
| RA | 3,935,497 | A→G | 11.1% | G291G (GGA→GGG) | dppB → | dipeptide ABC transporter permease DppB |
| RA | 3,953,876 | A→G | 10.0% | S879G (AGC→GGC) | bcsC → | cellulose biosynthesis protein BcsC |
| RA | 3,955,895 | T→C | 23.1% | F367L (TTC→CTC) | hmsP → | biofilm formation regulator HmsP |
| RA | 3,994,332 | A→C | 13.3% | R233R (CGT→CGG) | Y75_RS19765 ← | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase |
| RA | 4,002,969 | A→G | 29.1% | intergenic (‑196/‑36) | pitA ← / → Y75_RS19800 | inorganic phosphate transporter PitA/NAD(P)/FAD‑dependent oxidoreductase |
| RA | 4,017,560 | G→A | 29.9% | P1222S (CCG→TCG) | Y75_RS19860 ← | rhs element protein RhsB |
| RA | 4,024,550 | T→G | 11.4% | T209P (ACC→CCC) | nikB ← | nickel ABC transporter permease subunit NikB |
| RA | 4,041,774 | A→G | 26.4% | T340A (ACC→GCC) | Y75_RS19970 → | branched chain amino acid ABC transporter substrate‑binding protein LivJ |
| RA | 4,069,227 | A→G | 23.0% | E44E (GAA→GAG) | glgX → | glycogen debranching protein GlgX |
| RA | 4,071,173 | T→G | 14.9% | R29R (CGT→CGG) | glgC → | glucose‑1‑phosphate adenylyltransferase |
| RA | 4,071,644 | C→A | 14.6% | N186K (AAC→AAA) | glgC → | glucose‑1‑phosphate adenylyltransferase |
| RA | 4,095,881 | A→G | 22.0% | T104A (ACC→GCC) | bioH → | pimeloyl‑ACP methyl ester esterase BioH |
| RA | 4,140,820 | C→A | 14.6% | C50F (TGC→TTC) | Y75_RS20420 ← | YhfL family protein |
| RA | 4,199,333 | A→G | 26.3% | H198R (CAC→CGC) | rpsD → | 30S ribosomal protein S4 |
| RA | 4,248,243 | G→T | 9.8% | G141G (GGC→GGA) | malF ← | maltose ABC transporter permease MalF |
| RA | 4,259,643 | G→C | 12.1% | G138G (GGC→GGG) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase PlsB |
| RA | 4,275,018 | T→C | 26.5% | D815G (GAC→GGC) | uvrA ← | excinuclease ABC subunit UvrA |
| RA | 4,278,433 | T→G | 9.2% | T67P (ACC→CCC) | Y75_RS21180 ← | membrane protein |
| RA | 4,290,120 | T→A | 11.5% | Y281F (TAT→TTT) | acs ← | acetate‑‑CoA ligase |
| MC JC | 4,310,363 | Δ1,199 bp | 100% | Y75_RS21310–[alsK] | Y75_RS21310, [alsK] | |
| RA | 4,323,045 | T→C | 11.0% | E133G (GAG→GGG) | phnK ← | phosphonate C‑P lyase system protein PhnK |
| RA | 4,341,575 | T→C | 17.2% | G45G (GGA→GGG) | adiC ← | arginine/agmatine antiporter |
| RA | 4,371,271 | Δ2 bp | 100% | pseudogene (182‑183/1304 nt) | Y75_RS21600 ← | anaerobic C4‑dicarboxylate transporter |
| RA | 4,372,300 | A→G | 30.0% | G236G (GGT→GGC) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,373,555 | A→G | 17.0% | E71G (GAG→GGG) | fxsA → | membrane protein FxsA |
| RA | 4,425,872 | A→G | 14.8% | S405G (AGT→GGT) | ulaA → | PTS ascorbate transporter subunit IIC |
| RA | 4,425,882 | T→G | 15.8% | M408R (ATG→AGG) | ulaA → | PTS ascorbate transporter subunit IIC |
| RA | 4,468,554 | T→G | 7.6% | H279P (CAC→CCC) | treC ← | alpha,alpha‑phosphotrehalase |
| RA | 4,486,479 | T→C | 8.5% | E680G (GAG→GGG) | valS ← | valine‑‑tRNA ligase |
| RA | 4,535,841 | T→G | 10.3% | N164T (AAC→ACC) | Y75_RS22465 ← | M42 family metallopeptidase |
| RA | 4,561,746 | T→C | 23.3% | V25A (GTA→GCA) | iraD → | anti‑adapter protein IraD |
| RA | 4,583,511 | A→G | 33.1% | C169C (TGT→TGC) | Y75_RS22715 ← | 5‑methylcytosine‑specific restriction endonuclease subunit McrB |
| RA | 4,595,570 | A→C | 14.5% | G130G (GGT→GGG) | btsT ← | pyruvate/proton symporter BtsT |
| RA | 4,603,422 | C→T | 23.6% | A234T (GCC→ACC) | opgB ← | phosphatidylglycerol‑‑membrane‑oligosaccharide glycerophosphotransferase |
| RA | 4,609,066 | G→T | 12.2% | C76F (TGC→TTC) | bglJ → | DNA‑binding transcriptional activator BglJ |
| RA | 4,611,582 | A→G | 18.8% | S267P (TCC→CCC) | rsmC ← | 16S rRNA (guanine(1207)‑N(2))‑methyltransferase RsmC |
| RA | 4,632,259 | A→C | 23.6% | S89R (AGC→CGC) | nadR → | multifunctional transcriptional regulator/nicotinamide‑nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 1301041–1302370 | 1302407 | 38–1367 | 150 [0] | [0] 184 | Y75_RS06530–Y75_RS06530 | Y75_RS06530,Y75_RS06530 |
| * | * | ÷ | NC_007779 | 1397873–1398957 | 1406267 | 7311–8395 | 67 [66] | [0] 138 | [Y75_RS07025]–[Y75_RS07065] | [Y75_RS07025],Y75_RS07030,uspE,Y75_RS07040,ogt,abgT,Y75_RS07060,[Y75_RS07065] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 228016 = | NA (NA) | 6 (0.040) | 6/410 | NT | NA | noncoding (2267/2930 nt) | Y75_RS01035 | 23S ribosomal RNA |
| ? | NC_007779 | 228041 = | NA (NA) | noncoding (2292/2930 nt) | Y75_RS01035 | 23S ribosomal RNA | |||||
| * | ? | NC_007779 | 273180 = | NA (NA) | 180 (1.110) | 103/422 | NT | 100% | intergenic (+3/+145) | Y75_RS01330/Y75_RS01335 | hypothetical protein/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 701988 = | 0 (0.000) | coding (29/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | = 380697 | 7 (0.040) | 16 (0.100) | 5/402 | NT | 70.7% | coding (168/361 nt) | Y75_RS01860 | IS3‑like element IS2 family transposase |
| ? | NC_007779 | = 381063 | NA (NA) | coding (174/914 nt) | Y75_RS01860 | IS3‑like element IS2 family transposase | |||||
| * | ? | NC_007779 | 607256 = | NA (NA) | 8 (0.060) | 6/372 | NT | 5.8% | intergenic (+45/‑32) | Y75_RS03010/Y75_RS03015 | type I toxin‑antitoxin system toxin HokE/IS4‑like element IS421 family transposase |
| ? | NC_007779 | 608549 = | 149 (0.910) | intergenic (+149/+133) | Y75_RS03015/entD | IS4‑like element IS421 family transposase/enterobactin synthase subunit EntD | |||||
| * | ? | NC_007779 | = 689467 | NA (NA) | 162 (0.990) | 92/424 | NT | 100% | intergenic (‑32/+298) | Y75_RS03405/lnt | IS5‑like element IS5 family transposase/apolipoprotein N‑acyltransferase |
| ? | NC_007779 | = 701992 | 0 (0.000) | coding (25/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | 1097383 = | 109 (0.670) | 9 (0.060) | 4/418 | NT | 11.2% | intergenic (+132/+242) | Y75_RS05375/Y75_RS05385 | hypothetical protein/RtT sRNA |
| ? | NC_007779 | 1097819 = | 35 (0.220) | noncoding (75/88 nt) | Y75_RS05390 | tRNA‑Ser | |||||
| * | ? | NC_007779 | 1209367 = | 84 (0.510) | 105 (0.690) | 69/392 | NT | 59.2% | coding (290/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | 1211196 = | 67 (0.440) | intergenic (‑6/‑66) | Y75_RS06035/pinE | tail fiber protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | = 1209382 | 86 (0.530) | 109 (0.720) | 69/392 | NT | 59.8% | coding (305/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | = 1211179 | 67 (0.440) | coding (12/495 nt) | Y75_RS06035 | tail fiber protein | |||||
| * | ? | NC_007779 | 1294773 = | 95 (0.580) | 5 (0.030) | 5/424 | NT | 5.0% | intergenic (‑274/‑331) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 2176983 = | NA (NA) | intergenic (‑3/‑32) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1294776 | 90 (0.550) | 8 (0.050) | 7/424 | NT | 8.2% | intergenic (‑277/‑328) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑298/+146) | flhD/Y75_RS09980 | flagellar transcriptional regulator FlhD/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | 1294844 = | 4 (0.020) | 171 (1.050) | 93/422 | NT | 97.7% | intergenic (‑345/‑260) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | = 1398951 | NA (NA) | intergenic (+145/‑128) | Y75_RS07025/Y75_RS07030 | IS5‑like element IS5 family transposase/DUF2534 family protein | |||||
| * | ? | NC_007779 | 1294844 = | 4 (0.020) | 41 (0.250) | 34/422 | NT | 91.1% | intergenic (‑345/‑260) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 2176984 = | NA (NA) | intergenic (‑4/‑31) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1294848 | 4 (0.020) | 130 (0.790) | 81/424 | NT | 97.0% | intergenic (‑349/‑256) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 1397758 = | NA (NA) | intergenic (‑122/‑32) | ynaI/Y75_RS07025 | low conductance mechanosensitive channel YnaI/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1294848 | 4 (0.020) | 66 (0.400) | 52/424 | NT | 94.3% | intergenic (‑349/‑256) | hns/tdk | DNA‑binding transcriptional regulator H‑NS/thymidine kinase |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑298/+146) | flhD/Y75_RS09980 | flagellar transcriptional regulator FlhD/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1301040 | 0 (0.000) | 116 (0.820) +28 bp |
74/368 | NT | 100% | intergenic (+218/‑45) | ychE/Y75_RS06530 | NAAT family transporter YchE/IS3‑like element IS2 family transposase |
| ? | NC_007779 | = 4311564 | NA (NA) | pseudogene (914/921 nt) | alsK | allose kinase | |||||
| * | ? | NC_007779 | 1302408 = | 0 (0.000) | 162 (0.990) | 90/424 | NT | 100% | intergenic (+50/‑488) | Y75_RS06530/oppA | IS3‑like element IS2 family transposase/oligopeptide ABC transporter substrate‑binding protein OppA |
| ? | NC_007779 | 1397758 = | NA (NA) | intergenic (‑122/‑32) | ynaI/Y75_RS07025 | low conductance mechanosensitive channel YnaI/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1388812 | 135 (0.830) | 9 (0.060) | 7/412 | NT | 6.0% | coding (379/1542 nt) | tyrR | transcriptional regulator TyrR |
| ? | NC_007779 | = 1388962 | 151 (0.950) | coding (529/1542 nt) | tyrR | transcriptional regulator TyrR | |||||
| * | ? | NC_007779 | = 1398952 | NA (NA) | 108 (0.660) | 67/424 | NT | 65.9% | intergenic (+146/‑127) | Y75_RS07025/Y75_RS07030 | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NC_007779 | 1909106 = | 56 (0.340) | coding (44/210 nt) | cspE | transcription antiterminator/RNA stability regulator CspE | |||||
| * | ? | NC_007779 | 1406268 = | 0 (0.000) | 131 (0.800) | 79/424 | NT | 100% | coding (12/1311 nt) | Y75_RS07065 | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑298/+146) | flhD/Y75_RS09980 | flagellar transcriptional regulator FlhD/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | 1885208 = | 38 (0.230) | 105 (0.640) | 67/424 | NT | 73.4% | coding (307/1446 nt) | Y75_RS09485 | BCCT family transporter |
| ? | NC_007779 | 2411458 = | NA (NA) | intergenic (‑147/+15) | lrhA/Y75_RS12035 | transcriptional regulator LrhA/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | = 1885215 | 42 (0.260) | 142 (0.870) | 90/424 | NT | 77.2% | coding (314/1446 nt) | Y75_RS09485 | BCCT family transporter |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | Y75_RS12035/Y75_RS12040 | IS1‑like element IS1A family transposase/alanine transaminase AlaA | |||||
| * | ? | NC_007779 | = 1909109 | 57 (0.350) | 122 (0.750) | 74/424 | NT | 68.2% | coding (41/210 nt) | cspE | transcription antiterminator/RNA stability regulator CspE |
| ? | NC_007779 | = 1981403 | NA (NA) | intergenic (‑32/‑487) | Y75_RS09980/uspC | IS5‑like element IS5 family transposase/universal stress protein UspC | |||||
| * | ? | NC_007779 | 2063152 = | 102 (0.620) | 58 (0.360) | 45/422 | NT | 36.4% | intergenic (‑101/+1) | cbl/nac | HTH‑type transcriptional regulator Cbl/nitrogen assimilation transcriptional regulator |
| ? | NC_007779 | 2176984 = | NA (NA) | intergenic (‑4/‑31) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 2063156 | 103 (0.630) | 28 (0.170) | 24/424 | NT | 21.4% | coding (915/918 nt) | nac | nitrogen assimilation transcriptional regulator |
| ? | NC_007779 | 2103886 = | NA (NA) | pseudogene (1/354 nt) | Y75_RS23870 | glycosyltransferase family 2 protein | |||||
| * | ? | NC_007779 | 2728361 = | NA (NA) | 4 (0.020) | 3/418 | NT | NA | noncoding (1453/1554 nt) | Y75_RS13580 | 16S ribosomal RNA |
| ? | NC_007779 | 2728548 = | NA (NA) | noncoding (1266/1554 nt) | Y75_RS13580 | 16S ribosomal RNA | |||||
| * | ? | NC_007779 | = 2882429 | 155 (0.950) | 8 (0.050) | 5/408 | NT | 5.4% | coding (366/1509 nt) | casA | type I‑E CRISPR‑associated protein Cse1/CasA |
| ? | NC_007779 | = 2882536 | 130 (0.830) | coding (259/1509 nt) | casA | type I‑E CRISPR‑associated protein Cse1/CasA | |||||
| * | ? | NC_007779 | 3128803 = | NA (NA) | 20 (0.120) | 18/422 | NT | 13.6% | coding (33/1137 nt) | Y75_RS15525 | hypothetical protein |
| ? | NC_007779 | = 3132911 | 128 (0.780) | coding (125/693 nt) | Y75_RS15550 | thymidylate kinase | |||||
| * | ? | NC_007779 | = 3129996 | NA (NA) | 17 (0.100) | 16/424 | NT | 12.2% | intergenic (+146/+1) | Y75_RS15530/Y75_RS15535 | IS5‑like element IS5 family transposase/lipopolysaccharide biosynthesis protein |
| ? | NC_007779 | 3132907 = | 122 (0.750) | coding (121/693 nt) | Y75_RS15550 | thymidylate kinase | |||||
| * | ? | NC_007779 | 3261134 = | NA (NA) | 57 (0.350) | 40/424 | NT | 29.7% | intergenic (‑60/‑32) | tdcE/Y75_RS16205 | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase/IS5‑like element IS5 family transposase |
| ? | NC_007779 | = 3306581 | 135 (0.830) | coding (1135/1890 nt) | Y75_RS16445 | ATP‑dependent RNA helicase DeaD | |||||
| * | ? | NC_007779 | = 3262327 | NA (NA) | 46 (0.280) | 36/422 | NT | 25.4% | intergenic (+145/+4) | Y75_RS16205/tdcD | IS5‑like element IS5 family transposase/propionate kinase |
| ? | NC_007779 | 3306577 = | 136 (0.830) | coding (1139/1890 nt) | Y75_RS16445 | ATP‑dependent RNA helicase DeaD | |||||
| * | ? | NC_007779 | 3419810 = | 114 (0.700) | 8 (0.050) | 4/408 | NT | 7.2% | pseudogene (914/1025 nt) | Y75_RS16995 | amino acid ABC transporter substrate‑binding protein |
| ? | NC_007779 | 3419983 = | 97 (0.620) | intergenic (+62/‑6) | Y75_RS16995/Y75_RS17000 | amino acid ABC transporter substrate‑binding protein/amino acid ABC transporter permease | |||||
| * | ? | NC_007779 | 3748316 = | 0 (0.000) | 145 (0.890) | 82/424 | NT | 100% | pseudogene (665/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | = 4056987 | NA (NA) | coding (391/417 nt) | Y75_RS20060 | hypothetical protein | |||||
| * | ? | NC_007779 | = 3748324 | 3 (0.020) | 156 (0.950) | 90/424 | NT | 98.1% | pseudogene (657/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | 4056220 = | NA (NA) | intergenic (‑209/+15) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | 4056221 = | NA (NA) | 160 (0.980) | 81/422 | NT | 97.6% | intergenic (‑210/+14) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase |
| ? | NC_007779 | 4370787 = | 4 (0.020) | pseudogene (667/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | = 4056987 | NA (NA) | 194 (1.190) | 110/424 | NT | 99.0% | coding (391/417 nt) | Y75_RS20060 | hypothetical protein |
| ? | NC_007779 | = 4370795 | 2 (0.010) | pseudogene (659/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | 4110945 = | 148 (0.900) | 11 (0.070) | 10/404 | NT | 7.1% | coding (124/402 nt) | hslR | ribosome‑associated heat shock protein Hsp15 |
| ? | NC_007779 | 4111021 = | 147 (0.940) | coding (48/402 nt) | hslR | ribosome‑associated heat shock protein Hsp15 | |||||