breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 5,382 A→G H50R (CAC→CGC)  b0005 → hypothetical protein
RA 7,690 T→C G90G (GGA→GGG yaaJ ← inner membrane transport protein
RA 25,037 A→G S883G (AGC→GGC)  ileS → isoleucine tRNA synthetase
RA 40,966 T→C A322A (GCA→GCG caiT ← putative carnitine transporter
RA 50,798 A→G V142A (GTG→GCG)  apaH ← diadenosine tetraphosphatase
RA 54,155 A→G L183P (CTG→CCG)  surA ← survival protein
RA 56,445 T→C D222G (GAC→GGC)  imp ← organic solvent tolerance
RA 66,528 T→C Q8R (CAG→CGG)  araD ← L‑ribulose‑5‑phosphate 4‑epimerase
MC JC 66,533 3540 bp→27 bp [araD]araB [araD], araA, araB
RA 70,289 G→T intergenic (‑241/‑98) araB ← / → araC L‑ribulokinase/transcriptional regulator for ara operon
RA 78,003 A→C E128A (GAG→GCG)  yabM → putative transport protein
RA 78,217 A→G E199E (GAA→GAG yabM → putative transport protein
RA 89,004 A→G Y326C (TAT→TGT)  fruR → FruR
RA 106,897 T→A L114Q (CTG→CAG)  lpxC → UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase
RA 120,524 A→G V343A (GTA→GCA)  aroP ← aromatic amino acid transport protein
RA 188,475 T→C Q59R (CAG→CGG)  glnD ← protein PII
RA 209,205 A→G V195V (GTA→GTG accA → acetyl‑CoA carboxylase
RA 234,824 G→A P9P (CCG→CCA yafS → hypothetical protein
RA 251,476 A→G E193E (GAA→GAG dinP → damage‑inducible protein P
RA 258,703 A→G Y208H (TAT→CAT)  phoE ← outer membrane pore protein E
RA 274,462 T→C intergenic (‑121/‑87) trs51 ← / → ykfD IS5 transposase/putative amino acid/amine transport protein
RA 281,596 T→C L39P (CTG→CCG)  yagE → putative lyase/synthase
RA 348,519 T→C V205A (GTG→GCG)  prpB → putative phosphonomutase 2
RA 353,608 A→G K560R (AAG→AGG)  prpE → putative propionyl‑CoA synthetase
RA 368,947 T→C R371R (CGT→CGC mhpA → 3‑(3‑hydroxyphenyl)propionate hydroxylase
RA 383,887 A→G intergenic (‑47/‑512) yaiS ← / → tauA hypothetical protein/TauA
RA 409,783 C→T A185V (GCA→GTA)  yajF → possible NAGC‑like transcriptional regulator
RA 415,614 A→G V188A (GTG→GCG)  sbcD ← ATP‑dependent dsDNA exonuclease
RA 458,009 T→C intergenic (+85/‑103) clpX → / → lon ATP‑dependent specificity component of clpP serine protease/ATP‑dependent protease La
RA 460,114 T→C V668A (GTA→GCA)  lon → ATP‑dependent protease La
RA 483,091 A→G G179G (GGT→GGC acrB ← acridine efflux pump
JC 483,561 (C)6→9 coding (67/3150 nt) acrB ← acridine efflux pump
RA 485,747 A→G intergenic (+115/‑13) acrR → / → aefA acrAB operon repressor/putative alpha helix protein
RA 490,630 A→G intergenic (+147/‑6) ybaN → / → apt putative gene 58/adenine phosphoribosyltransferase
RA 499,823 T→C S159P (TCC→CCC)  gsk → inosine‑guanosine kinase
RA 502,653 C→T intergenic (‑191/+47) ybaL ← / ← fsr putative transport protein/fosmidomycin resistance protein
RA 503,440 T→C S161G (AGT→GGT)  fsr ← fosmidomycin resistance protein
RA 515,579 T→C I146T (ATC→ACC)  ybbL → putative ATP‑binding component of a transport system
RA 520,337 T→C L233P (CTG→CCG)  ybbP → putative oxidoreductase
RA 538,747 T→C L126P (CTG→CCG)  ybbX → putative hydrolase
RA 547,694 A→G E38E (GAA→GAG b4507 → hypothetical protein
RA 547,835 +G coding (255/261 nt) b4507 → hypothetical protein
RA 580,498 G→A V148I (GTT→ATT)  nohB → bacteriophage DNA packaging protein
RA 593,380 G→A A205V (GCG→GTG)  ybcZ ← putative 2‑component sensor protein
RA 596,240 G→A intergenic (+44/‑114) ylcB → / → ylcC putative resistance protein/hypothetical protein
RA 609,564 T→C A718A (GCA→GCG fepA ← FepA
RA 619,129 C→T V98V (GTG→GTA fepC ← FepC
RA 620,296 A→G V39A (GTA→GCA)  fepG ← FepG
RA 631,240 (G)7→8 intergenic (+18/‑165) cstA → / → ybdD carbon starvation protein/hypothetical protein
RA 632,969 A→G H54R (CAC→CGC)  ybdL → putative aminotransferase
RA 675,023 A→G Y250H (TAT→CAT)  ybeQ ← hypothetical protein
RA 677,120 G→A A161A (GCG→GCA ybeS → hypothetical protein
RA 680,175 A→G E247E (GAA→GAG ybeV → hypothetical protein
RA 693,605 C→T G192S (GGC→AGC)  yleA ← hypothetical protein
RA 704,236 T→C L357S (TTG→TCG)  nagE → PTS system, N‑acetylglucosamine‑specific enzyme IIABC
RA 708,658 T→C W368R (TGG→CGG)  ybfM → hypothetical protein
RA 725,321 T→C T313T (ACA→ACG kdpB ← KdpB
RA 736,480 A→G T52A (ACG→GCG)  ybfL → putative receptor protein
RA 763,667 G→A G89S (GGC→AGC)  sucD → succinyl‑CoA synthetase alpha subunit
RA 770,182 (A)7→8 intergenic (+348/‑496) ybgG → / → cydA putative sugar hydrolase/cytochrome d terminal oxidase polypeptide subunit I
RA 778,625 T→C R112R (CGT→CGC pal → peptidoglycan‑associated lipoprotein
RA 781,041 (A)6→7 intergenic (+166/‑267) lysQ → / → nadA tRNA‑Lys/quinolinate synthetase A protein
RA 781,490 C→T T61T (ACC→ACT nadA → quinolinate synthetase A protein
RA 796,423 T→C V216A (GTG→GCG)  modC → ATP‑binding component of molybdate transport
RA 802,290 T→C V394A (GTA→GCA)  ybhI → putative membrane pump protein
RA 806,926 T→C L69L (TTA→TTG ybhB ← hypothetical protein
RA 822,429 T→C R178R (CGA→CGG ybhO ← putative synthetase
RA 826,487 T→C K573R (AAG→AGG)  ybhF ← YbhF
RA 839,460 A→G L432P (CTG→CCG)  b0805 ← putative outer membrane receptor for iron transport
RA 851,847 T→C intergenic (‑27/‑47) ybiP ← / → b0816 hypothetical protein/hypothetical protein
RA 857,347 A→G V313A (GTA→GCA)  ybiU ← hypothetical protein
RA 887,445 A→G L533P (CTG→CCG)  b0847 ← putative transport protein
RA 891,914 T→C L242P (CTG→CCG)  rimK → ribosomal protein S6 modification protein
RA 910,552 A→G R274R (CGT→CGC b0872 ← hypothetical protein
RA 918,859 T→C R134R (CGT→CGC b0878 → putative membrane protein
RA 924,888 C→T intergenic (+125/+219) clpA → / ← serW ATP‑binding component of serine protease/tRNA‑Ser
RA 931,683 T→C intergenic (‑410/‑135) trxB ← / → lrp thioredoxin reductase/Lrp
RA 971,337 A→G L121L (TTA→TTG b0919 → hypothetical protein
RA 985,236 A→G Y324H (TAC→CAC)  ompF ← outer membrane protein 1a
RA 992,723 T→C H182R (CAC→CGC)  ycbE ← putative ATP‑binding component of a transport system
RA 994,984 G→A V76V (GTC→GTT ycbN ← hypothetical protein
RA 1,002,916 C→T D101D (GAC→GAT b0943 → putative fimbrial‑like protein
RA 1,014,440 C→T P103S (CCT→TCT)  ymbA → hypothetical protein
RA 1,015,425 A→T L90Q (CTG→CAG)  fabA ← beta‑hydroxydecanoyl thioester dehydrase
RA 1,018,363 G→A P305L (CCG→CTG)  ompA ← outer membrane protein 3a
RA 1,051,230 T→C V54A (GTA→GCA)  sfa → Sfa
RA 1,056,041 A→G E186E (GAA→GAG torT → TorT
RA 1,073,812 T→C C116C (TGT→TGC ycdC → putative tet operon regulator
RA 1,125,900 A→G Q174R (CAG→CGG)  yceH → hypothetical protein
RA 1,188,890 A→G L37P (CTG→CCG)  phoQ ← PhoQ
RA 1,193,636 A→G V170A (GTG→GCG)  ymfC ← hypothetical protein
RA 1,207,804 G→A A180V (GCG→GTG)  ycfA ← hypothetical protein
RA 1,236,913 T→C S40S (AGT→AGC dadA → D‑amino acid dehydrogenase subunit
RA 1,237,202 A→G T137A (ACG→GCG)  dadA → D‑amino acid dehydrogenase subunit
RA 1,251,414 G→A A379T (GCA→ACA)  b1201 → putative sensor‑type regulator
RA 1,277,250 C→T A24V (GCG→GTG)  narK → nitrite extrusion protein
RA 1,286,275 A→G intergenic (+68/+35) b1228 → / ← tpr hypothetical protein/protamine‑like protein
RA 1,290,621 T→C intergenic (+143/‑59) hnr → / → galU Hnr/glucose‑1‑phosphate uridylyltransferase
RA 1,302,782 A→G N2S (AAC→AGC)  oppD → OppD
RA 1,322,824 T→C S19P (TCT→CCT)  yciQ → hypothetical protein
RA 1,324,623 T→C G618G (GGT→GGC yciQ → hypothetical protein
RA 1,329,673 T→C V201A (GTT→GCT)  topA → DNA topoisomerase type I omega protein
RA 1,335,418 A→G S522G (AGC→GGC)  acnA → aconitate hydrase 1
RA 1,380,158 C→T P63L (CCG→CTG)  ompG → outer membrane protein
RA 1,398,212 A→G W17R (TGG→CGG)  ogt ← O‑6‑alkylguanine‑DNA/cysteine‑protein methyltransferase
RA 1,407,361 T→C intergenic (+304/‑174) b1342 → / → dbpA hypothetical protein/ATP‑dependent RNA helicase
RA 1,412,158 C→T T220T (ACG→ACA recT ← recombinase
RA 1,415,349 A→G V21A (GTC→GCC)  recE ← exonuclease VIII
RA 1,425,052 C→T A192V (GCT→GTT)  b1368 → putative alpha helix protein
RA 1,435,255 (T)9→8 intergenic (‑338/+29) b1377 ← / ← ydbK putative outer membrane protein/putative oxidoreductase Fe‑S subunit
RA 1,438,614 A→G A65A (GCT→GCC ydbK ← putative oxidoreductase Fe‑S subunit
RA 1,447,942 C→T V478I (GTC→ATC)  tynA ← copper amine oxidase
RA 1,470,125 G→A intergenic (+1592/‑2120) tra82 → / → ydbC IS30 transposase/putative dehydrogenase
RA 1,488,295 G→A intergenic (+600/‑595) ald → / → cybB aldehyde dehydrogenase, NAD‑linked/cytochrome b(561)
RA 1,529,193 T→C V195A (GTA→GCA)  b1458 → hypothetical protein
RA 1,536,978 T→C T1213A (ACC→GCC)  narZ ← cryptic nitrate reductase 2 alpha subunit
RA 1,595,883 A→G T76T (ACT→ACC ydeK ← hypothetical protein
RA 1,602,535 C→T F155F (TTC→TTT ydeZ → putative transport system permease protein
RA 1,603,279 A→G S69G (AGT→GGT)  b1516 → putative LACI‑type transcriptional regulator
RA 1,607,710 A→G L332P (CTT→CCT)  uxaB ← altronate oxidoreductase
RA 1,609,260 G→A H207Y (CAT→TAT)  b1522 ← hypothetical protein
RA 1,634,017 A→T I125I (ATT→ATA) ‡ nohA ← NohA
RA 1,643,412 T→C E82E (GAA→GAG relE ← hypothetical protein
RA 1,650,355 T→C F274L (TTC→CTC)  b1579 → putative transposase
RA 1,652,626 T→C E180E (GAA→GAG rspA ← starvation sensing protein
RA 1,667,555 C→T G21E (GGG→GAG)  ynfL ← putative transcriptional regulator LYSR‑type
RA 1,672,424 T→C L163P (CTC→CCC)  b1601 → putative transport protein
RA 1,678,790 T→C S404P (TCT→CCT)  b1605 → putative arginine/ornithine antiporter
RA 1,680,820 T→C L216P (CTG→CCG)  rstA → response transcriptional regulatory protein
RA 1,690,632 A→G Y78H (TAT→CAT)  uidC ← membrane‑associated protein
RA 1,692,491 G→A R535R (CGC→CGT uidA ← beta‑D‑glucuronidase
RA 1,710,827 T→C V12A (GTC→GCC)  ydgR → putative transport protein
RA 1,718,191 A→G T98A (ACT→GCT)  slyB → putative outer membrane protein
RA 1,718,640 A→G L72P (CTG→CCG)  slyA ← SlyA
RA 1,722,918 T→A N247Y (AAC→TAC)  b1647 ← hypothetical protein
RA 1,729,429 G→A S773S (TCG→TCA lhr → Lhr
RA 1,739,051 A→G M373V (ATG→GTG)  ydhC → putative transport protein
RA 1,741,574 2 bp→GA coding (94‑95/1374 nt) ydhE → putative transport protein
RA 1,753,667 T→C intergenic (‑502/‑55) b1675 ← / → pykF hypothetical protein/pyruvate kinase I
RA 1,754,991 A→G T424A (ACT→GCT)  pykF → pyruvate kinase I
RA 1,756,526 A→G V75A (GTG→GCG)  ynhG ← hypothetical protein
RA 1,763,263 T→C T132A (ACG→GCG)  b1686 ← hypothetical protein
RA 1,764,440 A→G V757A (GTC→GCC)  ydiJ ← putative oxidase
RA 1,765,259 T→C D484G (GAC→GGC)  ydiJ ← putative oxidase
RA 1,774,277 A→G M223V (ATG→GTG)  ydiF → hypothetical protein
RA 1,786,195 T→C L243L (TTG→CTG)  ydiA → hypothetical protein
RA 1,788,259 G→A T337M (ACG→ATG)  b1706 ← hypothetical protein
RA 1,801,157 T→C S14P (TCT→CCT)  b1721m → ankyrin repeat protein
RA 1,804,740 A→G D117G (GAT→GGT)  pfkB → 6‑phosphofructokinase II
RA 1,807,191 G→A P23S (CCT→TCT)  b1726 ← hypothetical protein
RA 1,809,082 T→C V42A (GTT→GCT)  b1729 → hypothetical protein
RA 1,810,386 C→T T261T (ACG→ACA b1730 ← hypothetical protein
RA 1,812,482 T→C F198L (TTC→CTC)  katE → catalase
RA 1,815,038 T→C Q41R (CAG→CGG)  ydjC ← hypothetical protein
RA 1,820,066 A→G I72T (ATC→ACC)  osmE ← OsmE
RA 1,830,970 T→C R173R (CGT→CGC xthA → exonuclease III
RA 1,837,763 T→C H91H (CAT→CAC b1757 → putative thiosulfate sulfur transferase
RA 1,841,925 T→C H324R (CAC→CGC)  b1762 ← hypothetical protein
RA 1,860,370 T→C E28E (GAA→GAG yeaA ← hypothetical protein
RA 1,866,414 T→C Y495H (TAT→CAT)  yeaG → hypothetical protein
RA 1,868,990 G→A T194T (ACG→ACA yeaI → hypothetical protein
RA 1,870,206 T→C S108P (TCC→CCC)  yeaJ → hypothetical protein
RA 1,913,489 A→G C24R (TGT→CGT)  proQ ← ProQ
RA 1,920,591 T→C T135A (ACC→GCC)  b1838 ← protein phosphatase 1
RA 1,971,922 T→C D476G (GAC→GGC)  cheA ← CheA
MC JC 1,976,527 Δ776 bp insB5insA5 insB5, insA5
RA 1,980,940 +C coding (1/363 nt)
coding (627/627 nt)
araH ←
araH ←
ABC‑type arabinose transport system permease component
ABC‑type arabinose transport system permease component
RA 1,982,323 C→T G257D (GGC→GAC)  araG ← ATP‑binding component of high‑affinity L‑arabinose transport system
RA 2,008,480 +A coding (637/654 nt) yedK → hypothetical protein
RA 2,019,024 T→C Y306H (TAT→CAT)  fliM → FliM
RA 2,026,185 C→T intergenic (‑131/+25) b1956 ← / ← b1957 hypothetical protein/hypothetical protein
RA 2,043,272 A→G S130G (AGT→GGT)  b1978 → hypothetical protein
RA 2,051,650 A→G intergenic (‑300/‑15) b1980 ← / → shiA hypothetical protein/putative transport protein, shikimate
RA 2,072,030 T→A C824S (TGC→AGC)  b2000 → outer membrane fluffing protein
RA 2,078,590 G→A S8S (AGC→AGT yeeA ← hypothetical protein
RA 2,080,143 C→T G145S (GGT→AGT)  dacD ← penicillin binding protein 6b
RA 2,080,595 A→G intergenic (‑20/‑183) dacD ← / → sbcB penicillin binding protein 6b/exonuclease I
RA 2,115,417 T→C H337R (CAC→CGC)  wcaK ← putative galactokinase
RA 2,118,886 T→C T231A (ACC→GCC)  wcaJ ← putative colanic acid biosynthsis UDP‑glucose lipid carrier transferase
RA 2,134,357 C→T P303P (CCG→CCA wza ← putative polysaccharide export protein
RA 2,179,549 T→C L145P (CTG→CCG)  b2100 → putative kinase
RA 2,213,926 T→C T191A (ACG→GCG)  yehW ← putative transport system permease protein
RA 2,216,746 G→C S252S (TCC→TCG yehZ ← putative transport system permease protein
RA 2,235,117 C→T A219A (GCG→GCA mglC ← MglC
RA 2,241,691 G→A intergenic (‑19/‑239) folE ← / → yeiG GTP cyclohydrolase I/putative esterase
RA 2,243,793 T→C T333A (ACG→GCG)  cirA ← CirA
RA 2,265,062 C→T F266F (TTC→TTT yeiQ → putative oxidoreductase
RA 2,266,433 T→C R195R (CGT→CGC yeiR → hypothetical protein
RA 2,267,467 T→C G198G (GGT→GGC b2174 → hypothetical protein
RA 2,273,779 (G)5→6 coding (487/1026 nt) yejE → putative transport system permease protein
RA 2,313,133 T→C P542P (CCT→CCC yojN → putative 2‑component sensor protein
RA 2,315,162 T→C Q896R (CAG→CGG)  rcsC ← RcsC
RA 2,341,770 G→A G140G (GGC→GGT yfaL ← putative ATP‑binding component of a transport system
RA 2,342,081 A→G Y37H (TAT→CAT)  yfaL ← putative ATP‑binding component of a transport system
RA 2,352,506 T→C H74H (CAT→CAC glpB → sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit
RA 2,375,359 T→C Y85C (TAC→TGC)  yfbB ← hyptothetical protein
RA 2,383,620 C→T V41V (GTG→GTA yfbK ← hypothetical protein
RA 2,391,634 A→G V478A (GTG→GCG)  nuoL ← NADH dehydrogenase I chain L
RA 2,422,395 A→G S45S (AGT→AGC hisP ← ATP‑binding component of histidine transport
RA 2,429,483 T→C E65E (GAA→GAG dedD ← putative lipoprotein
RA 2,449,273 A→G L111P (CTG→CCG)  b2335 ← putative fimbrial protein
RA 2,473,878 G→A P116P (CCG→CCA b2362 → hypothetical protein
RA 2,483,335 (C)6→7 coding (942/3594 nt) evgS → EvgS
RA 2,488,636 T→C E445E (GAA→GAG b2373 ← hypothetical protein
RA 2,495,116 T→C L400L (CTA→CTG b2379 ← putative aminotransferase
RA 2,502,384 T→C N41S (AAC→AGC)  b2383 ← putative PTS system enzyme IIA component, enzyme I
RA 2,515,923 A→G intergenic (‑71/+138) b2395 ← / ← alaX hypothetical protein/tRNA‑Ala
RA 2,552,922 T→C N94S (AAC→AGC)  yfeG ← putative ARAC‑type regulatory protein
RA 2,563,766 A→G V380A (GTG→GCG)  b2451 ← hypothetical protein
RA 2,586,147 A→G Y178C (TAT→TGT)  acrD → AcrD
RA 2,610,050 T→C L44P (CTG→CCG)  b2491 → HyfR
RA 2,613,759 A→G L48P (CTG→CCG)  perM ← putative permease
RA 2,618,556 A→G Y122H (TAC→CAC)  upp ← uracil phosphoribosyltransferase
RA 2,621,342 C→T G93G (GGC→GGT ppk → polyphosphate kinase
RA 2,635,451 G→A intergenic (‑36/+43) b2511 ← / ← b2512 putative GTP‑binding factor/putative dehydrogenase
RA 2,637,565 G→A A344V (GCT→GTT)  hisS ← histidine tRNA synthetase
RA 2,647,829 T→C T827A (ACG→GCG)  b2520 ← hypothetical protein
RA 2,650,396 T→C intergenic (‑89/‑118) b2520 ← / → b2521 hypothetical protein/putative thiosulfate sulfur transferase
RA 2,656,601 T→C T119A (ACG→GCG)  hscA ← HscA
RA 2,658,670 T→C E294E (GAA→GAG b2530 ← putative aminotransferase
RA 2,660,690 A→G R218R (CGT→CGC b2532 ← putative ATP synthase beta subunit
RA 2,667,330 T→C S93S (AGT→AGC hcaA1 → large terminal subunit of phenylpropionate dioxygenase
RA 2,691,024 A→T F847Y (TTT→TAT)  purL ← phosphoribosylformyl‑glycineamide synthetase
RA 2,707,029 T→C E132E (GAA→GAG rseA ← sigma‑E factor
RA 2,729,373 +C intergenic (‑195/+247) rrsG ← / ← clpB 16S ribosomal RNA/ClpB
RA 2,747,389 Δ1 bp coding (572/591 nt) b4540 → hypothetical protein
RA 2,748,385 A→G D115D (GAT→GAC grpE ← GrpE
RA 2,751,091 G→C A426P (GCT→CCT)  recN → RecN
RA 2,764,178 G→A L80L (CTG→CTA yfjN → putative cell division protein
RA 2,766,382 C→G P218A (CCC→GCC)  b2632 → putative GTP‑binding protein
RA 2,766,423 G→A R231R (CGG→CGA b2632 → putative GTP‑binding protein
RA 2,766,427 2 bp→AC coding (697‑698/864 nt) b2632 → putative GTP‑binding protein
RA 2,766,473 A→G D248G (GAT→GGT)  b2632 → putative GTP‑binding protein
RA 2,766,475 A→G T249A (ACC→GCC)  b2632 → putative GTP‑binding protein
RA 2,781,020 +G intergenic (‑144/+65) ypjA ← / ← b2648 putative ATP‑binding component of a transport system/hypothetical protein
RA 2,781,027 C→G intergenic (‑151/+58) ypjA ← / ← b2648 putative ATP‑binding component of a transport system/hypothetical protein
RA 2,782,327 T→C V41V (GTA→GTG b2649 ← hypothetical protein
RA 2,785,180 Δ1 bp coding (413/495 nt) b2655 → hypothetical protein
RA 2,786,585 G→A G63D (GGC→GAC)  b2658 → hypothetical protein
RA 2,787,653 G→A A216A (GCG→GCA b2659 → hypothetical protein
RA 2,801,986 T→C V155A (GTG→GCG)  nrdF → ribonucleoside‑diphosphate reductase 2 beta chain
RA 2,803,648 T→C S271S (AGT→AGC proV → ATP‑binding component of transport system for glycine, betaine and proline
RA 2,812,859 Δ1 bp intergenic (‑105/+46) ygaG ← / ← gshA hypothetical protein/gamma‑glutamate‑cysteine ligase
RA 2,816,853 T→C intergenic (‑186/+130) serV ← / ← csrA tRNA‑Ser/CsrA
RA 2,819,446 G→C G196G (GGC→GGG alaS ← alanyl‑tRNA synthetase
RA 2,820,144 Δ1 bp intergenic (+24/+18) b4542 → / ← oraA hypothetical protein/OraA
RA 2,822,501 (C)6→7 intergenic (‑132/+13) ygaD ← / ← mltB hypothetical protein/membrane‑bound lytic murein transglycosylase B
RA 2,823,915 A→G K21E (AAG→GAG)  srlA → PTS system, glucitol/sorbitol‑specific IIC component
RA 2,824,797 T→C F128S (TTT→TCT)  srlE → PTS system glucitol/sorbitol‑specific enzyme IIBC component
RA 2,825,102 T→C F230L (TTC→CTC)  srlE → PTS system glucitol/sorbitol‑specific enzyme IIBC component
RA 2,838,044 +G coding (498/1458 nt) ascF → PTS system enzyme IIBC
RA 2,838,055 Δ1 bp coding (509/1458 nt) ascF → PTS system enzyme IIBC
RA 2,839,652 C→T L214L (CTG→TTG)  ascB → 6‑phospho‑beta‑glucosidase
RA 2,842,033 G→T R67R (CGC→CGA hycG ← hydrogenase activity
RA 2,857,315 C→T Q734* (CAG→TAG)  mutS → MutS
MC JC 2,875,936 Δ61 bp intergenic (+295/+596) iap → / ← ygbF Iap/hypothetical protein
RA 2,885,719 T→C D206G (GAT→GGT)  cysH ← 3'‑phosphoadenosine 5'‑phosphosulfate reductase
RA 2,896,819 +C coding (622/657 nt) ygcU ← putative oxidoreductase subunit
RA 2,898,328 (A)9→8 intergenic (‑33/‑286) b2774 ← / → yqcE putative oxidoreductase/putative transport protein
RA 2,898,541 T→C intergenic (‑246/‑73) b2774 ← / → yqcE putative oxidoreductase/putative transport protein
RA 2,898,589 (T)8→7 intergenic (‑294/‑25) b2774 ← / → yqcE putative oxidoreductase/putative transport protein
RA 2,905,601 A→G A121A (GCT→GCC eno ← enolase
RA 2,907,285 T→C D135G (GAC→GGC)  pyrG ← CTP synthetase
RA 2,907,490 C→T A67T (GCT→ACT)  pyrG ← CTP synthetase
RA 2,908,853 T→C G87G (GGA→GGG chpA ← ChpA
RA 2,929,613 A→G V179V (GTA→GTG b2798 → Exo
RA 2,964,753 T→C A568A (GCA→GCG ptsP ← PtsP
RA 2,974,333 (A)8→7 intergenic (‑297/‑288) aas ← / → galR 2‑acyl‑glycerophospho‑ethanolamine acyltransferase/GalR
RA 2,974,569 C→T intergenic (‑533/‑52) aas ← / → galR 2‑acyl‑glycerophospho‑ethanolamine acyltransferase/GalR
RA 2,977,924 A→G L294L (TTA→TTG lysR → LysR
RA 3,005,399 +C coding (1044/1092 nt) ygeW → putative carbamoyl transferase
RA 3,025,676 +C coding (535/570 nt) ygfQ → hypothetical protein
RA 3,029,284 T→C intergenic (‑318/‑34) ygfT ← / → ygfU putative oxidoreductase Fe‑S subunit/putative permease
RA 3,030,523 A→G R402R (CGA→CGG ygfU → putative permease
RA 3,038,976 C→T E39K (GAA→AAA)  ygfY ← hypothetical protein
RA 3,059,022 T→C G51G (GGT→GGC sbm → methylmalonyl‑CoA mutase
RA 3,072,672 T→C Q13R (CAG→CGG)  yggC ← putative kinase
RA 3,075,220 (T)5→6 coding (256/357 nt) yggP ← hypothetical protein
RA 3,077,514 Δ1 bp intergenic (‑165/+149) cmtB ← / ← tktA PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme
RA 3,077,640 +G intergenic (‑291/+23) cmtB ← / ← tktA PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme
RA 3,077,905 A→G S584P (TCG→CCG)  tktA ← transketolase 1 isozyme
RA 3,078,245 C→G G470G (GGG→GGC tktA ← transketolase 1 isozyme
RA 3,099,661 (A)5→6 intergenic (‑19/+164) yggN ← / ← b2959 hypothetical protein/hypothetical protein
RA 3,107,469 +C intergenic (‑296/‑101) b2965 ← / → yqgA ornithine decarboxylase isozyme/putative transport protein
RA 3,108,438 C→A noncoding (56/76 nt) pheV → tRNA‑Phe
RA 3,115,116 +C coding (2013/2028 nt) b2974 ← putative endoglucanase
RA 3,117,911 A→G V462A (GTA→GCA)  yghK ← putative permease
RA 3,117,945 G→A P451S (CCG→TCG)  yghK ← putative permease
RA 3,123,585 +G coding (953/2286 nt) glcF ← glycolate oxidase iron‑sulfur subunit
RA 3,125,033 G→A A335V (GCC→GTC)  glcD ← glycolate oxidase subunit D
RA 3,130,334 A→G V30V (GTT→GTC b2983 ← hypothetical protein
RA 3,138,885 T→C E139E (GAA→GAG hybD ← putative processing element for hydrogenase‑2
RA 3,143,485 T→C K264K (AAA→AAG b2997 ← putative hydrogenase subunit
RA 3,152,247 +C intergenic (+10/+29) yghB → / ← yqhC hypothetical protein/putative ARAC‑type regulatory protein
JC 3,156,257 (CCA)2→1 coding (594‑596/930 nt) yqhG → hypothetical protein
RA 3,157,555 T→C K536E (AAG→GAG)  ygiRQ ← Fe‑S oxidoreductase
RA 3,158,202 +C coding (961/975 nt) ygiRQ ← Fe‑S oxidoreductase
RA 3,166,935 2 bp→CG coding (312‑313/483 nt) b3023 ← hypothetical protein
RA 3,185,776 T→C F121L (TTC→CTC)  yqiG → putative membrane protein
RA 3,185,807 T→C F131S (TTT→TCT)  yqiG → putative membrane protein
RA 3,197,191 T→C Q31R (CAG→CGG)  glnE ← GlnE
RA 3,203,865 C→T L11L (TTG→TTA ygiP ← putative transcriptional regulator LYSR‑type
RA 3,207,904 A→G V94A (GTG→GCG)  ygjD ← putative O‑sialoglycoprotein endopeptidase
RA 3,221,097 2 bp→GC coding (824‑825/3093 nt) b3076 → evolved beta‑D‑galactosidase alpha subunit
RA 3,222,944 4 bp→AGCA coding (2671‑2674/3093 nt) b3076 → evolved beta‑D‑galactosidase alpha subunit
RA 3,224,879 Δ1 bp coding (1005/1434 nt) ygjI → putative oxidoreductase
RA 3,224,926 +C coding (1052/1434 nt) ygjI → putative oxidoreductase
RA 3,236,177 Δ1 bp intergenic (+239/‑45) ygjR → / → ygjT hypothetical protein/putative transport protein
RA 3,236,735 +C coding (514/966 nt) ygjT → putative transport protein
RA 3,236,758 Δ1 bp coding (537/966 nt) ygjT → putative transport protein
RA 3,237,242 +C intergenic (+55/‑342) ygjT → / → ygjU putative transport protein/putative transport protein
RA 3,237,247 +C intergenic (+60/‑337) ygjT → / → ygjU putative transport protein/putative transport protein
RA 3,249,311 G→A S216S (TCG→TCA yqjG → putative transferase
RA 3,253,742 Δ1 bp coding (551/552 nt) yhaNM ← hypothetical protein
RA 3,255,594 Δ1 bp coding (4/1278 nt) yhaO ← putative transport system permease protein
RA 3,255,616 Δ1 bp intergenic (‑19/+312) yhaO ← / ← yhaP putative transport system permease protein/putative L‑serine dehydratase
RA 3,256,893 +C coding (405/423 nt) yhaQ ← putative L‑serine dehydratase
RA 3,257,838 +G coding (2222/2241 nt) tdcE ← putative formate acetyltransferase 3
RA 3,279,197 A→C R145S (AGA→AGC agaA → putative N‑acetylgalactosamine‑6‑phosphate deacetylase
RA 3,295,019 T→C D254G (GAT→GGT)  yraQ ← hypothetical protein
RA 3,298,112 T→C G96G (GGA→GGG yhbS ← hypothetical protein
RA 3,312,970 T→C H229R (CAC→CGC)  infB ← protein chain initiation factor IF‑2
RA 3,333,863 A→G R91R (CGT→CGC murA ← UDP‑N‑glucosamine 1‑carboxyvinyltransferase
RA 3,336,835 T→C T19A (ACG→GCG)  yrbE ← hypothetical protein
RA 3,342,306 T→C L241P (CTC→CCC)  yhbG → putative ATP‑binding component of a transport system
RA 3,352,254 2 bp→GC intergenic (‑569/‑12) yhcC ← / → gltB hypothetical protein/glutamate synthase large subunit
RA 3,374,875 T→G T61P (ACC→CCC)  sspA ← stringent starvation protein A
RA 3,389,812 Δ1 bp intergenic (‑149/+4151) tldD ← / ← cafA TldD/CafA
RA 3,393,106 Δ1 bp intergenic (‑3443/+857) tldD ← / ← cafA TldD/CafA
RA 3,418,840 +G coding (1070/1089 nt) b3269 → putative transport system permease protein
RA 3,421,120 Δ1 bp noncoding (60/121 nt) rrfF ← 5S ribosomal RNA
RA 3,429,527 Δ1 bp coding (40/510 nt) yrdD ← putative DNA topoisomerase
RA 3,430,453 +C coding (745/747 nt) smf ← putative Rossmann‑fold nucleotide‑binding protein
RA 3,442,615 A→G P84P (CCT→CCC rpsE ← 30S ribosomal subunit protein S5
RA 3,452,089 T→C Q316R (CAG→CGG)  yheD ← YheD
RA 3,453,670 T→C T152T (ACT→ACC yheE → YheE
RA 3,465,851 T→C Y547C (TAC→TGC)  yheB ← hypothetical protein
RA 3,472,030 G→A R54C (CGT→TGT)  rpsL ← 30S ribosomal subunit protein S12
RA 3,500,309 Δ1 bp coding (333/363 nt) b3372 → hypothetical protein
RA 3,509,958 Δ1 bp intergenic (‑195/+314) yhfZ ← / ← trpS hypothetical protein/tryptophan tRNA synthetase
RA 3,510,121 +G intergenic (‑358/+151) yhfZ ← / ← trpS hypothetical protein/tryptophan tRNA synthetase
RA 3,537,405 +GC intergenic (+61/‑394) b3407 → / → feoA hypothetical protein/ferrous iron transport protein A
RA 3,542,050 A→G L144P (CTG→CCG)  bioH ← BioH
RA 3,544,357 +G coding (163/1314 nt) gntT → gluconate permease
RA 3,544,360 +G coding (166/1314 nt) gntT → gluconate permease
RA 3,544,363 +C coding (169/1314 nt) gntT → gluconate permease
RA 3,548,005 C→T G701D (GGT→GAT)  malP ← maltodextrin phosphorylase
RA 3,550,199 A→G intergenic (‑93/‑519) malP ← / → malT maltodextrin phosphorylase/MalT
RA 3,554,088 +C coding (2/624 nt) yhgKJ ← RNA phosphage cyclase
RA 3,554,113 Δ1 bp coding (372/396 nt) yhgKJ ← RNA phosphage cyclase
RA 3,554,118 +C coding (367/396 nt) yhgKJ ← RNA phosphage cyclase
RA 3,558,932 2 bp→GC coding (153‑154/831 nt) glpG ← GlpG
RA 3,573,700 +C intergenic (+403/+997) yhgN → / ← gntK hypothetical protein/gluconokinase 2
RA 3,575,446 +G coding (912/942 nt) gntR ← GntR
RA 3,578,561 (A)9→8 intergenic (‑125/‑208) yhhX ← / → yhhY putative regulator/hypothetical protein
RA 3,580,830 T→C S54S (AGT→AGC yrhA → hypothetical protein
RA 3,582,212 T→C intergenic (+22/‑178) b4547 → / → yrhB hypothetical protein/hypothetical protein
RA 3,584,676 A→G S35G (AGC→GGC)  yhhA → hypothetical protein
RA 3,592,609 A→G L168P (CTG→CCG)  livM ← LivM
RA 3,627,142 +G intergenic (‑24/+23) yhiH ← / ← yhiI putative ATP‑binding component of a transport system, fragment 1/putative membrane protein
RA 3,634,770 T→C I91V (ATC→GTC)  yhiN ← hypothetical protein
RA 3,659,028 A→G T329A (ACC→GCC)  yhiV → putative transport system permease protein
RA 3,663,106 A→G L112P (CTA→CCA)  yhiX ← putative ARAC‑type regulatory protein
RA 3,666,733 T→C H29R (CAC→CGC)  yhjA ← putative cytochrome C peroxidase
RA 3,667,459 G→A D80N (GAC→AAC)  treF → cytoplasmic trehalase
RA 3,673,861 A→G intergenic (+123/+59) yhjE → / ← yhjG putative transport protein/hypothetical protein
RA 3,674,812 (T)6→5 coding (1184/2076 nt) yhjG ← hypothetical protein
RA 3,686,256 A→G L166P (CTG→CCG)  b3530 ← putative oxidoreductase subunit
RA 3,686,775 +T intergenic (‑23/+9) b3530 ← / ← yhjM putative oxidoreductase subunit/putative endoglucanase
RA 3,687,487 T→C Q135R (CAG→CGG)  yhjM ← putative endoglucanase
RA 3,698,071 T→C intergenic (+549/‑121) yhjU → / → yhjV hypothetical protein/putative transporter protein
RA 3,703,602 2 bp→GC intergenic (‑183/+124) dppB ← / ← dppA dipeptide transport system permease protein 1/dipeptide transport protein
RA 3,707,190 (C)6→7 coding (948/1725 nt) yhjW ← hypothetical protein
RA 3,714,436 2 bp→GC coding (261‑262/660 nt) yiaD → putative outer membrane protein
RA 3,715,348 A→G D141G (GAC→GGC)  yiaE → putative dehydrogenase
RA 3,718,305 T→C intergenic (‑76/‑4) yiaZ ← / → yi5A putative membrane permeability altering protein/IS150 hypothetical protein
RA 3,734,264 2 bp→GC coding (542‑543/825 nt) bax ← putative ATP‑binding protein
RA 3,736,298 T→C N391N (AAT→AAC malS → alpha‑amylase
RA 3,737,956 2 bp→CG coding (623‑624/1254 nt) avtA → alanine‑alpha‑ketoisovalerate transaminase
RA 3,743,603 Δ1 bp coding (1171/1275 nt) yiaN → putative membrane protein
RA 3,754,310 C→A R382M (AGG→ATG)  yiaY ← putative oxidoreductase
JC 3,754,317 +GCG coding (1138/1149 nt) yiaY ← putative oxidoreductase
RA 3,759,803 A→G intergenic (‑221/‑7) yibF ← / → rhsA putative S‑transferase/RhsA
RA 3,765,203 A→T Q119L (CAG→CTG)  yibJ → hypothetical protein
RA 3,765,234 G→A G129G (GGG→GGA yibJ → hypothetical protein
RA 3,782,932 T→C Y16H (TAT→CAT)  yibO → putative 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase
RA 3,790,609 G→A D239D (GAC→GAT htrL ← HtrL
RA 3,799,298 T→C Y110C (TAC→TGC)  rfaJ ← UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase
RA 3,810,753 T→C A132A (GCT→GCC b3639 → Dfp
RA 3,824,873 G→A L679L (CTG→CTA recG → DNA helicase
RA 3,832,048 A→G R39R (CGT→CGC yicI ← hypothetical protein
RA 3,870,631 Δ1 bp coding (610/1764 nt) dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
RA 3,870,765 +G coding (476/1764 nt) dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
RA 3,870,876 Δ1 bp coding (365/1764 nt) dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
RA 3,872,450 +G coding (338/387 nt) yidW ← regulator protein for dgo operon
RA 3,873,627 Δ1 bp coding (506/672 nt) yidX → putative replicase
RA 3,874,594 A→G intergenic (‑14/+101) yidA ← / ← b3698 hypothetical protein/hypothetical protein
RA 3,876,595 G→C P385A (CCG→GCG)  gyrB ← DNA gyrase subunit B
RA 3,881,483 Δ1 bp intergenic (‑126/‑482) dnaA ← / → rpmH DnaA/50S ribosomal subunit protein L34
RA 3,889,795 G→A A184A (GCG→GCA yidY → putative transport protein
RA 3,891,703 T→C L69P (CTG→CCG)  yieE → hypothetical protein
RA 3,896,196 T→C C182C (TGT→TGC yieJ → hypothetical protein
RA 3,896,324 +G coding (698/711 nt) b3718 ← putative isomerase
RA 3,903,427 G→A R257C (CGT→TGT)  bglG ← BglG
RA 3,905,202 T→C D2G (GAC→GGC)  phoU ← PhoU
RA 3,909,645 T→C D551G (GAT→GGT)  glmS ← L‑glutamine:D‑fructose‑6‑phosphate aminotransferase
RA 3,923,268 T→C intergenic (‑7/+372) gidA ← / ← mioC glucose‑inhibited division/MioC
RA 3,927,062 +G coding (2/1284 nt)
coding (169/183 nt)
yieM ←
b4564 ←
hypothetical protein
hypothetical protein
RA 3,927,292 A→G W477R (TGG→CGG)  yieN ← putative 2‑component regulator
RA 3,928,363 C→T G120S (GGC→AGC)  yieN ← putative 2‑component regulator
RA 3,928,669 A→G L18L (TTG→CTG)  yieN ← putative 2‑component regulator
RA 3,930,457 Δ1 bp coding (1515/1560 nt) kup → low affinity potassium transport system
RA 3,930,568 +G intergenic (+66/‑373) kup → / → rbsD low affinity potassium transport system/RbsD
RA 3,930,677 +G intergenic (+175/‑264) kup → / → rbsD low affinity potassium transport system/RbsD
RA 3,932,295 C→T L298F (CTC→TTC)  rbsA → ATP‑binding component of D‑ribose high‑affinity transport system
JC 3,938,587 +TGC coding (220/546 nt) yiePs ← hypothetical protein
RA 3,941,734 Δ1 bp noncoding (409/2906 nt) rrlC → 23S ribosomal RNA
RA 3,944,244 C→A intergenic (+13/‑80) rrlC → / → rrfC 23S ribosomal RNA/5S ribosomal RNA
RA 3,944,676 2 bp→GC intergenic (+20/+75) trpT → / ← yifDA tRNA‑Trp/transcription regulator
RA 3,945,351 +C coding (1/600 nt)
coding (240/240 nt)
yifDA ←
yifDA ←
transcription regulator
transcription regulator
RA 3,945,882 A→G K58K (AAA→AAG yifE → hypothetical protein
RA 3,948,087 G→A intergenic (+44/‑96) ilvL → / → ilvG ilvGEDA operon leader peptide/acetolactate synthase II large subunit
RA 3,950,557 2 bp→GC coding (451‑452/930 nt) ilvE → branched‑chain amino‑acid aminotransferase
RA 3,951,166 +C coding (35/1818 nt) ilvD → dihydroxyacid dehydratase
RA 3,951,168 +G coding (37/1818 nt) ilvD → dihydroxyacid dehydratase
RA 3,951,478 C→T P116L (CCG→CTG)  ilvD → dihydroxyacid dehydratase
RA 3,957,092 +CC intergenic (+26/+58) ilvC → / ← ppiC ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C
RA 3,957,124 +G intergenic (+58/+26) ilvC → / ← ppiC ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C
RA 3,957,548 1 bp→GG intergenic (‑117/‑744) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
RA 3,957,551 +T intergenic (‑120/‑741) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
RA 3,957,560 +C intergenic (‑129/‑732) ppiC ← / → rep peptidyl‑prolyl cis‑trans isomerase C/rep helicase
RA 3,958,877 2 bp→CG coding (586‑587/2022 nt) rep → rep helicase
RA 3,959,281 G→A E330E (GAG→GAA rep → rep helicase
RA 3,960,578 2 bp→CG coding (1266‑1267/1485 nt) gppA ← guanosine pentaphosphatase
RA 3,961,588 C→G R86T (AGG→ACG)  gppA ← guanosine pentaphosphatase
RA 3,965,750 T→C S74P (TCT→CCT)  rfe → UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
JC 3,968,317 +CGT coding (612/1170 nt) wecB → UDP‑N‑acetyl glucosamine ‑2‑epimerase
RA 3,968,795 C→T R364C (CGC→TGC)  wecB → UDP‑N‑acetyl glucosamine ‑2‑epimerase
RA 3,969,103 2 bp→GC coding (232‑233/1263 nt) wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
RA 3,971,075 2 bp→GC coding (942‑943/1068 nt) rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,971,621 C→T G134G (GGC→GGT rffH → glucose‑1‑phosphate thymidylyltransferase
RA 3,972,637 2 bp→GC coding (430‑431/546 nt) wecD → hypothetical protein
RA 3,974,806 C→T A306V (GCG→GTG)  wzxE → putative cytochrome
RA 3,975,313 Δ1 bp intergenic (+173/‑901) wzxE → / → wecF putative cytochrome/TDP‑Fuc4NAc:lipidII transferase
RA 3,978,702 C→T S68F (TCC→TTC)  yifK → putative amino acid/amine transport protein
RA 3,979,535 +G coding (1036/1386 nt) yifK → putative amino acid/amine transport protein
RA 3,979,546 Δ1 bp coding (1047/1386 nt) yifK → putative amino acid/amine transport protein
RA 3,980,918 2 bp→CG coding (348‑349/1236 nt) aslB → putative arylsulfatase regulator
RA 3,982,242 T→C N460S (AAC→AGC)  aslA ← arylsulfatase
RA 3,987,586 2 bp→GC coding (814‑815/963 nt) hemC ← porphobilinogen deaminase
RA 3,987,822 2 bp→CG coding (578‑579/963 nt) hemC ← porphobilinogen deaminase
RA 3,991,616 T→C E19E (GAA→GAG
F52L (TTC→CTC) 
cyaY ←
b3808 →
hypothetical protein
hypothetical protein
RA 3,992,871 A→G D167G (GAT→GGT)  dapF → diaminopimelate epimerase
RA 3,996,531 C→T G312G (GGC→GGT uvrD → DNA‑dependent ATPase I and helicase II
RA 3,998,290 +G coding (379/486 nt) b4566 ← hypothetical protein
RA 4,001,421 2 bp→GC coding (381‑382/903 nt) rarD ← hypothetical protein
RA 4,001,486 2 bp→GC coding (316‑317/903 nt) rarD ← hypothetical protein
RA 4,001,717 +C coding (86/903 nt) rarD ← hypothetical protein
RA 4,004,979 +G coding (1511/1833 nt) recQ → ATP‑dependent DNA helicase
RA 4,004,984 +CG coding (1516/1833 nt) recQ → ATP‑dependent DNA helicase
RA 4,005,601 +C coding (237/282 nt) b4568 → hypothetical protein
RA 4,006,483 +C coding (183/207 nt) b4554 ← hypothetical protein
RA 4,007,718 2 bp→CG coding (943‑944/1023 nt) pldB → lysophospholipase L(2)
RA 4,007,907 +GG intergenic (+109/‑11) pldB → / → b4555 lysophospholipase L(2)/hypothetical protein
RA 4,008,375 +A coding (458/516 nt) b4555 → hypothetical protein
RA 4,008,391 +C coding (474/516 nt) b4555 → hypothetical protein
RA 4,008,393 C→G A159G (GCT→GGT)  b4555 → hypothetical protein
RA 4,008,400 +GAAA coding (483/516 nt) b4555 → hypothetical protein
RA 4,008,404 +G coding (487/516 nt) b4555 → hypothetical protein
RA 4,008,411 +C coding (494/516 nt) b4555 → hypothetical protein
RA 4,008,421 +T coding (504/516 nt) b4555 → hypothetical protein
RA 4,008,429 +TG coding (512/516 nt) b4555 → hypothetical protein
RA 4,008,469 +G intergenic (+36/‑197) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,008,473 +G intergenic (+40/‑193) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,008,491 2 bp→CG intergenic (+58/‑174) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,008,525 +G intergenic (+92/‑141) b4555 → / → yigM hypothetical protein/hypothetical protein
RA 4,012,830 A→G T730A (ACG→GCG) 
V297A (GTT→GCT) 
metE →
ysgA ←
tetrahydropteroyltriglutamate methyltransferase
hypothetical protein
RA 4,013,176 C→G G182R (GGA→CGA)  ysgA ← hypothetical protein
RA 4,013,177 +C coding (543/999 nt) ysgA ← hypothetical protein
RA 4,013,717 +G coding (3/999 nt) ysgA ← hypothetical protein
RA 4,013,772 +C intergenic (‑53/‑246) ysgA ← / → udp hypothetical protein/uridine phosphorylase
RA 4,016,743 C→T P101L (CCC→CTC)  ubiE → UbiE
RA 4,019,857 C→T intergenic (+56/‑28) b3836 → / → b3838 hypothetical protein/hypothetical protein
RA 4,019,860 Δ2 bp intergenic (+59/‑24) b3836 → / → b3838 hypothetical protein/hypothetical protein
RA 4,021,157 C→T G9G (GGC→GGT
G5G (GGC→GGT
tatD →
b4556 →
Mg‑dependent DNase
hypothetical protein
RA 4,021,684 Δ1 bp coding (542/609 nt)|coding (1/243 nt) b4556 →
tatD →
hypothetical protein
Mg‑dependent DNase
RA 4,026,252 2 bp→GC coding (110‑111/1164 nt) fadA ← thiolase I
RA 4,031,984 +C coding (1250/1299 nt) trkH → TrkH
RA 4,038,298 A→G intergenic (+82/+188) rrfA → / ← mobB 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,039,960 Δ1 bp intergenic (+42/‑36) yihD → / → yihE hypothetical protein/hypothetical protein
RA 4,041,654 G→A intergenic (+29/‑125) dsbA → / → b3861 protein disulfide isomerase I/putative GTP‑binding protein
RA 4,041,671 (T)6→7 intergenic (+46/‑108) dsbA → / → b3861 protein disulfide isomerase I/putative GTP‑binding protein
RA 4,050,464 G→A S282S (TCG→TCA hemN → O2‑independent coproporphyrinogen III oxidase
RA 4,051,144 Δ1 bp intergenic (+146/+305) hemN → / ← glnG O2‑independent coproporphyrinogen III oxidase/GlnG
RA 4,051,170 +C intergenic (+172/+279) hemN → / ← glnG O2‑independent coproporphyrinogen III oxidase/GlnG
RA 4,055,398 A→G S73P (TCC→CCC)  glnA ← glutamine synthetase
RA 4,057,759 +C coding (1773/1776 nt) yihK → putative GTP‑binding factor
RA 4,061,961 Δ1 bp coding (1386/1458 nt) b3876 ← putative permease
RA 4,075,331 A→G L101L (TTA→TTG yiiD → putative acetyltransferase
RA 4,085,675 Δ1 bp intergenic (+38/+13) yiiG → / ← frvR hypothetical protein/putative frv operon regulatory protein
RA 4,089,527 G→A P141S (CCG→TCG)  frvB ← PTS system, fructose‑like enzyme IIBC component
RA 4,091,351 C→T G168D (GGC→GAC)  rhaD ← rhamnulose‑phosphate aldolase
MC JC 4,091,572 3461 bp→29 bp [rhaD]rhaB [rhaD], rhaA, rhaB
RA 4,101,591 C→T A322A (GCG→GCA cpxA ← CpxA
RA 4,103,519 +T intergenic (‑268/‑530) cpxR ← / → yiiP transcriptional regulator in 2‑component system/putative transport system permease protein
RA 4,133,368 G→T E652* (GAG→TAG)  katG → catalase
RA 4,139,669 +C coding (233/330 nt)
coding (132/159 nt)
yijI →
b4558 ←
hypothetical protein
hypothetical protein
RA 4,156,159 A→G T31A (ACG→GCG)  oxyR → OxyR
RA 4,158,827 G→T G61V (GGC→GTC)  yijC → hypothetical protein
RA 4,161,702 C→G A162G (GCA→GGA)  btuB → BtuB
RA 4,172,320 T→C S96G (AGT→GGT)  coaA ← pantothenate kinase
RA 4,175,751 T→G F144V (TTC→GTC)  nusG → NusG
RA 4,175,949 +G intergenic (+82/‑76) nusG → / → rplK NusG/50S ribosomal subunit protein L11
RA 4,177,426 T→C intergenic (+265/‑148) rplA → / → rplJ 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
RA 4,181,376 G→A A852T (GCT→ACT)  rpoB → RNA polymerase beta subunit
RA 4,184,644 A→G T573A (ACT→GCT)  rpoC → RNA polymerase beta prime subunit
RA 4,186,374 T→C R1149R (CGT→CGC rpoC → RNA polymerase beta prime subunit
RA 4,194,577 2 bp→GC coding (97‑98/774 nt) yjaD → hypothetical protein
RA 4,194,729 A→G G83G (GGA→GGG yjaD → hypothetical protein
RA 4,196,394 A→G Q11Q (CAA→CAG nfi → endonuclease V
RA 4,199,968 G→A A155A (GCG→GCA hydH → HydH
RA 4,216,491 T→C V106A (GTG→GCG)  aceK → isocitrate dehydrogenase kinase/phosphatase
RA 4,221,520 T→C R38R (CGT→CGC metH → B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase
RA 4,224,890 G→A G1162S (GGC→AGC)  metH → B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase
RA 4,227,714 A→G L3P (CTG→CCG)  pepE ← peptidase E
RA 4,229,642 A→G L391L (TTG→CTG)  lysC ← aspartokinase III
RA 4,232,040 A→G H235R (CAC→CGC)  pgi → glucosephosphate isomerase
RA 4,237,776 T→C intergenic (+467/‑128) yjbH → / → yjbA hypothetical protein/hypothetical protein
RA 4,254,178 A→G intergenic (‑133/‑38) plsB ← / → dgkA glycerol‑3‑phosphate acyltransferase/diacylglycerol kinase
RA 4,293,960 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate‑aspartate symport protein/hypothetical protein
RA 4,298,691 A→G V609A (GTC→GCC)  yjcQ ← hypothetical protein
RA 4,307,521 G→A R347C (CGC→TGC)  yjcW ← putative ATP‑binding component of a transport system
RA 4,311,496 +C coding (301/408 nt) phnQ ← hypothetical protein
RA 4,316,203 T→A Q47L (CAG→CTG)  phnK ← ATP‑binding component of phosphonate transport
RA 4,319,415 A→G C196R (TGC→CGC)  phnF ← putative transcriptional regulator
RA 4,347,223 A→G H130H (CAT→CAC yjdG ← putative 2‑component transcriptional regulator
RA 4,387,877 A→G L21P (CTG→CCG)  psd ← phosphatidylserine decarboxylase
RA 4,388,615 A→G V158A (GTG→GCG)  b4161 ← hypothetical protein
RA 4,394,272 C→T P210P (CCC→CCT amiB → N‑acetylmuramoyl‑l‑alanine amidase II
RA 4,416,484 A→G H242H (CAT→CAC yjfR ← hypothetical protein
RA 4,429,526 C→T A12A (GCG→GCA ytfE ← hypothetical protein
RA 4,435,684 +A coding (400/501 nt) ytfI → hypothetical protein
RA 4,448,541 +C intergenic (+46/‑92) ytfQ → / → ytfR putative LACI‑type transcriptional regulator/YtfR
RA 4,448,543 +C intergenic (+48/‑90) ytfQ → / → ytfR putative LACI‑type transcriptional regulator/YtfR
RA 4,449,738 +G coding (1106/1254 nt) ytfR → YtfR
RA 4,463,185 A→G G190G (GGT→GGC treB ← PTS trehalose‑specific system enzyme IIBC
RA 4,463,718 A→G L13L (TTG→CTG)  treB ← PTS trehalose‑specific system enzyme IIBC
RA 4,472,408 A→G intergenic (+117/‑28) b4251 → / → b4252 hypothetical protein/hypothetical protein
RA 4,474,826 +A intergenic (+1/+44) yjgL → / ← argI hypothetical protein/ornithine carbamoyltransferase 1
MC JC 4,474,849 20 bp→30 bp intergenic (+24/+2) yjgL → / ← argI hypothetical protein/ornithine carbamoyltransferase 1
RA 4,477,041 Δ1 bp intergenic (‑151/‑269) b4256 ← / → yjgN hypothetical protein/hypothetical protein
RA 4,477,068 +C intergenic (‑178/‑242) b4256 ← / → yjgN hypothetical protein/hypothetical protein
RA 4,477,281 Δ1 bp intergenic (‑391/‑29) b4256 ← / → yjgN hypothetical protein/hypothetical protein
RA 4,477,321 Δ1 bp coding (12/1182 nt) yjgN → hypothetical protein
RA 4,478,503 (A)7→6 intergenic (+12/+47) yjgN → / ← valS hypothetical protein/valine tRNA synthetase
RA 4,478,511 Δ1 bp intergenic (+20/+39) yjgN → / ← valS hypothetical protein/valine tRNA synthetase
RA 4,478,527 Δ1 bp intergenic (+36/+23) yjgN → / ← valS hypothetical protein/valine tRNA synthetase
RA 4,499,168 C→T intergenic (+11/+503) yjgZ → / ← yi41 hypothetical protein/IS4 hypothetical protein
RA 4,500,673 C→T T109T (ACG→ACA yi41 ← IS4 hypothetical protein
RA 4,502,206 A→G E194G (GAG→GGG)  b4279 → putative transport protein
RA 4,512,256 A→G S664P (TCC→CCC)  fecA ← FecA
RA 4,522,123 A→G R152R (CGT→CGC b4298 ← putative lyase/synthase
RA 4,531,089 T→C I88M (ATA→ATG yjhQ ← hypothetical protein
RA 4,542,643 Δ1 bp intergenic (+46/‑22) b4316 → / → fimD Pil/FimD
RA 4,544,170 T→C I502I (ATT→ATC fimD → FimD
RA 4,551,066 A→G V199V (GTA→GTG uxuB → D‑mannonate oxidoreductase
RA 4,573,190 Δ1 bp coding (1487/1542 nt) yjiU → hypothetical protein
RA 4,576,170 A→G R246R (CGT→CGC mcrB ← McrB
RA 4,577,071 A→G *114Q (TAA→CAA)  yjiW ← hypothetical protein
RA 4,583,050 G→A Q446* (CAA→TAA)  hsdR ← endonuclease R
RA 4,593,254 2 bp→GC coding (59‑60/807 nt) yjjM ← hypothetical protein
RA 4,593,336 +G intergenic (‑23/‑208) yjjM ← / → yjjN hypothetical protein/putative oxidoreductase
RA 4,600,078 C→T W135* (TGG→TAG)  yjjP ← putative structural protein
RA 4,603,664 A→G noncoding (71/88 nt) leuV ← tRNA‑Leu
RA 4,608,595 2 bp→GC intergenic (+23/‑369) prfC → / → osmY peptide chain release factor RF‑3/OsmY
RA 4,614,238 G→T L133I (CTA→ATA)  yjjI ← hypothetical protein
RA 4,621,505 A→G M61T (ATG→ACG)  lplA ← lipoate‑protein ligase A
RA 4,629,559 T→C Y420H (TAC→CAC)  slt → soluble lytic murein transglycosylase
RA 4,637,055 A→G S437G (AGT→GGT)  creD → CreD

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 363478 365531 2054 145 [140] [143] 146 [lacZ] [lacZ]
* * ÷ NC_000913 2518981–2519022 2519121–2519070 49–141 146 [143] [143] 147 [valU]–[valX] [valU],[valX]
* * ÷ NC_000913 3421328–3421870 3422242–3421880 11–915 144 [140] [141] 148 [rrfD]–[rrlD] [rrfD],[rrlD]
* * ÷ NC_000913 3943590–3943811 3943811 1–222 144 [140] [143] 145 rrlC 23S ribosomal RNA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 269765 =NA (NA)245 (0.950) 127/184 0.4 98.8% coding (300/405 nt) yi91a hypothetical protein
?NC_000913 = 370983 3 (0.010)coding (536/882 nt) mhpC 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase
* ? NC_000913 = 279335NA (NA)281 (1.090) 128/184 0.3 98.2% coding (252/339 nt) b4505 hypothetical protein
?NC_000913 370982 = 5 (0.020)coding (535/882 nt) mhpC 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase
* ? NC_000913 3192559 =286 (1.110)203 (0.990)
+ATGTGTTAATGAAACCTTC
82/146 1.7 50.1% intergenic (+18/+402) b3051/b3052 putative membrane protein/putative kinase
?NC_000913 = 3192916 226 (0.880)intergenic (+375/+45) b3051/b3052 putative membrane protein/putative kinase
* ? NC_000913 3349258 =13 (0.050)303 (1.170) 136/184 0.1 95.9% coding (1403/2331 nt) arcB aerobic respiration sensor‑response protein
?NC_000913 = 3349263 NA (NA)coding (1398/2331 nt) arcB aerobic respiration sensor‑response protein