breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 5,382 | A→G | H50R (CAC→CGC) | b0005 → | hypothetical protein |
RA | 7,690 | T→C | G90G (GGA→GGG) | yaaJ ← | inner membrane transport protein |
RA | 25,037 | A→G | S883G (AGC→GGC) | ileS → | isoleucine tRNA synthetase |
RA | 40,966 | T→C | A322A (GCA→GCG) | caiT ← | putative carnitine transporter |
RA | 50,798 | A→G | V142A (GTG→GCG) | apaH ← | diadenosine tetraphosphatase |
RA | 54,155 | A→G | L183P (CTG→CCG) | surA ← | survival protein |
RA | 56,445 | T→C | D222G (GAC→GGC) | imp ← | organic solvent tolerance |
RA | 66,528 | T→C | Q8R (CAG→CGG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
MC JC | 66,533 | 3540 bp→27 bp | [araD]–araB | [araD], araA, araB | |
RA | 70,289 | G→T | intergenic (‑241/‑98) | araB ← / → araC | L‑ribulokinase/transcriptional regulator for ara operon |
RA | 78,003 | A→C | E128A (GAG→GCG) | yabM → | putative transport protein |
RA | 78,217 | A→G | E199E (GAA→GAG) | yabM → | putative transport protein |
RA | 89,004 | A→G | Y326C (TAT→TGT) | fruR → | FruR |
RA | 106,897 | T→A | L114Q (CTG→CAG) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 120,524 | A→G | V343A (GTA→GCA) | aroP ← | aromatic amino acid transport protein |
RA | 188,475 | T→C | Q59R (CAG→CGG) | glnD ← | protein PII |
RA | 209,205 | A→G | V195V (GTA→GTG) | accA → | acetyl‑CoA carboxylase |
RA | 234,824 | G→A | P9P (CCG→CCA) | yafS → | hypothetical protein |
RA | 251,476 | A→G | E193E (GAA→GAG) | dinP → | damage‑inducible protein P |
RA | 258,703 | A→G | Y208H (TAT→CAT) | phoE ← | outer membrane pore protein E |
RA | 274,462 | T→C | intergenic (‑121/‑87) | trs51 ← / → ykfD | IS5 transposase/putative amino acid/amine transport protein |
RA | 281,596 | T→C | L39P (CTG→CCG) | yagE → | putative lyase/synthase |
RA | 348,519 | T→C | V205A (GTG→GCG) | prpB → | putative phosphonomutase 2 |
RA | 353,608 | A→G | K560R (AAG→AGG) | prpE → | putative propionyl‑CoA synthetase |
RA | 368,947 | T→C | R371R (CGT→CGC) | mhpA → | 3‑(3‑hydroxyphenyl)propionate hydroxylase |
RA | 383,887 | A→G | intergenic (‑47/‑512) | yaiS ← / → tauA | hypothetical protein/TauA |
RA | 409,783 | C→T | A185V (GCA→GTA) | yajF → | possible NAGC‑like transcriptional regulator |
RA | 415,614 | A→G | V188A (GTG→GCG) | sbcD ← | ATP‑dependent dsDNA exonuclease |
RA | 458,009 | T→C | intergenic (+85/‑103) | clpX → / → lon | ATP‑dependent specificity component of clpP serine protease/ATP‑dependent protease La |
RA | 460,114 | T→C | V668A (GTA→GCA) | lon → | ATP‑dependent protease La |
RA | 483,091 | A→G | G179G (GGT→GGC) | acrB ← | acridine efflux pump |
JC | 483,561 | (C)6→9 | coding (67/3150 nt) | acrB ← | acridine efflux pump |
RA | 485,747 | A→G | intergenic (+115/‑13) | acrR → / → aefA | acrAB operon repressor/putative alpha helix protein |
RA | 490,630 | A→G | intergenic (+147/‑6) | ybaN → / → apt | putative gene 58/adenine phosphoribosyltransferase |
RA | 499,823 | T→C | S159P (TCC→CCC) | gsk → | inosine‑guanosine kinase |
RA | 502,653 | C→T | intergenic (‑191/+47) | ybaL ← / ← fsr | putative transport protein/fosmidomycin resistance protein |
RA | 503,440 | T→C | S161G (AGT→GGT) | fsr ← | fosmidomycin resistance protein |
RA | 515,579 | T→C | I146T (ATC→ACC) | ybbL → | putative ATP‑binding component of a transport system |
RA | 520,337 | T→C | L233P (CTG→CCG) | ybbP → | putative oxidoreductase |
RA | 538,747 | T→C | L126P (CTG→CCG) | ybbX → | putative hydrolase |
RA | 547,694 | A→G | E38E (GAA→GAG) | b4507 → | hypothetical protein |
RA | 547,835 | +G | coding (255/261 nt) | b4507 → | hypothetical protein |
RA | 580,498 | G→A | V148I (GTT→ATT) | nohB → | bacteriophage DNA packaging protein |
RA | 593,380 | G→A | A205V (GCG→GTG) | ybcZ ← | putative 2‑component sensor protein |
RA | 596,240 | G→A | intergenic (+44/‑114) | ylcB → / → ylcC | putative resistance protein/hypothetical protein |
RA | 609,564 | T→C | A718A (GCA→GCG) | fepA ← | FepA |
RA | 619,129 | C→T | V98V (GTG→GTA) | fepC ← | FepC |
RA | 620,296 | A→G | V39A (GTA→GCA) | fepG ← | FepG |
RA | 631,240 | (G)7→8 | intergenic (+18/‑165) | cstA → / → ybdD | carbon starvation protein/hypothetical protein |
RA | 632,969 | A→G | H54R (CAC→CGC) | ybdL → | putative aminotransferase |
RA | 675,023 | A→G | Y250H (TAT→CAT) | ybeQ ← | hypothetical protein |
RA | 677,120 | G→A | A161A (GCG→GCA) | ybeS → | hypothetical protein |
RA | 680,175 | A→G | E247E (GAA→GAG) | ybeV → | hypothetical protein |
RA | 693,605 | C→T | G192S (GGC→AGC) | yleA ← | hypothetical protein |
RA | 704,236 | T→C | L357S (TTG→TCG) | nagE → | PTS system, N‑acetylglucosamine‑specific enzyme IIABC |
RA | 708,658 | T→C | W368R (TGG→CGG) | ybfM → | hypothetical protein |
RA | 725,321 | T→C | T313T (ACA→ACG) | kdpB ← | KdpB |
RA | 736,480 | A→G | T52A (ACG→GCG) | ybfL → | putative receptor protein |
RA | 763,667 | G→A | G89S (GGC→AGC) | sucD → | succinyl‑CoA synthetase alpha subunit |
RA | 770,182 | (A)7→8 | intergenic (+348/‑496) | ybgG → / → cydA | putative sugar hydrolase/cytochrome d terminal oxidase polypeptide subunit I |
RA | 778,625 | T→C | R112R (CGT→CGC) | pal → | peptidoglycan‑associated lipoprotein |
RA | 781,041 | (A)6→7 | intergenic (+166/‑267) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthetase A protein |
RA | 781,490 | C→T | T61T (ACC→ACT) | nadA → | quinolinate synthetase A protein |
RA | 796,423 | T→C | V216A (GTG→GCG) | modC → | ATP‑binding component of molybdate transport |
RA | 802,290 | T→C | V394A (GTA→GCA) | ybhI → | putative membrane pump protein |
RA | 806,926 | T→C | L69L (TTA→TTG) | ybhB ← | hypothetical protein |
RA | 822,429 | T→C | R178R (CGA→CGG) | ybhO ← | putative synthetase |
RA | 826,487 | T→C | K573R (AAG→AGG) | ybhF ← | YbhF |
RA | 839,460 | A→G | L432P (CTG→CCG) | b0805 ← | putative outer membrane receptor for iron transport |
RA | 851,847 | T→C | intergenic (‑27/‑47) | ybiP ← / → b0816 | hypothetical protein/hypothetical protein |
RA | 857,347 | A→G | V313A (GTA→GCA) | ybiU ← | hypothetical protein |
RA | 887,445 | A→G | L533P (CTG→CCG) | b0847 ← | putative transport protein |
RA | 891,914 | T→C | L242P (CTG→CCG) | rimK → | ribosomal protein S6 modification protein |
RA | 910,552 | A→G | R274R (CGT→CGC) | b0872 ← | hypothetical protein |
RA | 918,859 | T→C | R134R (CGT→CGC) | b0878 → | putative membrane protein |
RA | 924,888 | C→T | intergenic (+125/+219) | clpA → / ← serW | ATP‑binding component of serine protease/tRNA‑Ser |
RA | 931,683 | T→C | intergenic (‑410/‑135) | trxB ← / → lrp | thioredoxin reductase/Lrp |
RA | 971,337 | A→G | L121L (TTA→TTG) | b0919 → | hypothetical protein |
RA | 985,236 | A→G | Y324H (TAC→CAC) | ompF ← | outer membrane protein 1a |
RA | 992,723 | T→C | H182R (CAC→CGC) | ycbE ← | putative ATP‑binding component of a transport system |
RA | 994,984 | G→A | V76V (GTC→GTT) | ycbN ← | hypothetical protein |
RA | 1,002,916 | C→T | D101D (GAC→GAT) | b0943 → | putative fimbrial‑like protein |
RA | 1,014,440 | C→T | P103S (CCT→TCT) | ymbA → | hypothetical protein |
RA | 1,015,425 | A→T | L90Q (CTG→CAG) | fabA ← | beta‑hydroxydecanoyl thioester dehydrase |
RA | 1,018,363 | G→A | P305L (CCG→CTG) | ompA ← | outer membrane protein 3a |
RA | 1,051,230 | T→C | V54A (GTA→GCA) | sfa → | Sfa |
RA | 1,056,041 | A→G | E186E (GAA→GAG) | torT → | TorT |
RA | 1,073,812 | T→C | C116C (TGT→TGC) | ycdC → | putative tet operon regulator |
RA | 1,125,900 | A→G | Q174R (CAG→CGG) | yceH → | hypothetical protein |
RA | 1,188,890 | A→G | L37P (CTG→CCG) | phoQ ← | PhoQ |
RA | 1,193,636 | A→G | V170A (GTG→GCG) | ymfC ← | hypothetical protein |
RA | 1,207,804 | G→A | A180V (GCG→GTG) | ycfA ← | hypothetical protein |
RA | 1,236,913 | T→C | S40S (AGT→AGC) | dadA → | D‑amino acid dehydrogenase subunit |
RA | 1,237,202 | A→G | T137A (ACG→GCG) | dadA → | D‑amino acid dehydrogenase subunit |
RA | 1,251,414 | G→A | A379T (GCA→ACA) | b1201 → | putative sensor‑type regulator |
RA | 1,277,250 | C→T | A24V (GCG→GTG) | narK → | nitrite extrusion protein |
RA | 1,286,275 | A→G | intergenic (+68/+35) | b1228 → / ← tpr | hypothetical protein/protamine‑like protein |
RA | 1,290,621 | T→C | intergenic (+143/‑59) | hnr → / → galU | Hnr/glucose‑1‑phosphate uridylyltransferase |
RA | 1,302,782 | A→G | N2S (AAC→AGC) | oppD → | OppD |
RA | 1,322,824 | T→C | S19P (TCT→CCT) | yciQ → | hypothetical protein |
RA | 1,324,623 | T→C | G618G (GGT→GGC) | yciQ → | hypothetical protein |
RA | 1,329,673 | T→C | V201A (GTT→GCT) | topA → | DNA topoisomerase type I omega protein |
RA | 1,335,418 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydrase 1 |
RA | 1,380,158 | C→T | P63L (CCG→CTG) | ompG → | outer membrane protein |
RA | 1,398,212 | A→G | W17R (TGG→CGG) | ogt ← | O‑6‑alkylguanine‑DNA/cysteine‑protein methyltransferase |
RA | 1,407,361 | T→C | intergenic (+304/‑174) | b1342 → / → dbpA | hypothetical protein/ATP‑dependent RNA helicase |
RA | 1,412,158 | C→T | T220T (ACG→ACA) | recT ← | recombinase |
RA | 1,415,349 | A→G | V21A (GTC→GCC) | recE ← | exonuclease VIII |
RA | 1,425,052 | C→T | A192V (GCT→GTT) | b1368 → | putative alpha helix protein |
RA | 1,435,255 | (T)9→8 | intergenic (‑338/+29) | b1377 ← / ← ydbK | putative outer membrane protein/putative oxidoreductase Fe‑S subunit |
RA | 1,438,614 | A→G | A65A (GCT→GCC) | ydbK ← | putative oxidoreductase Fe‑S subunit |
RA | 1,447,942 | C→T | V478I (GTC→ATC) | tynA ← | copper amine oxidase |
RA | 1,470,125 | G→A | intergenic (+1592/‑2120) | tra82 → / → ydbC | IS30 transposase/putative dehydrogenase |
RA | 1,488,295 | G→A | intergenic (+600/‑595) | ald → / → cybB | aldehyde dehydrogenase, NAD‑linked/cytochrome b(561) |
RA | 1,529,193 | T→C | V195A (GTA→GCA) | b1458 → | hypothetical protein |
RA | 1,536,978 | T→C | T1213A (ACC→GCC) | narZ ← | cryptic nitrate reductase 2 alpha subunit |
RA | 1,595,883 | A→G | T76T (ACT→ACC) | ydeK ← | hypothetical protein |
RA | 1,602,535 | C→T | F155F (TTC→TTT) | ydeZ → | putative transport system permease protein |
RA | 1,603,279 | A→G | S69G (AGT→GGT) | b1516 → | putative LACI‑type transcriptional regulator |
RA | 1,607,710 | A→G | L332P (CTT→CCT) | uxaB ← | altronate oxidoreductase |
RA | 1,609,260 | G→A | H207Y (CAT→TAT) | b1522 ← | hypothetical protein |
RA | 1,634,017 | A→T | I125I (ATT→ATA) ‡ | nohA ← | NohA |
RA | 1,643,412 | T→C | E82E (GAA→GAG) | relE ← | hypothetical protein |
RA | 1,650,355 | T→C | F274L (TTC→CTC) | b1579 → | putative transposase |
RA | 1,652,626 | T→C | E180E (GAA→GAG) | rspA ← | starvation sensing protein |
RA | 1,667,555 | C→T | G21E (GGG→GAG) | ynfL ← | putative transcriptional regulator LYSR‑type |
RA | 1,672,424 | T→C | L163P (CTC→CCC) | b1601 → | putative transport protein |
RA | 1,678,790 | T→C | S404P (TCT→CCT) | b1605 → | putative arginine/ornithine antiporter |
RA | 1,680,820 | T→C | L216P (CTG→CCG) | rstA → | response transcriptional regulatory protein |
RA | 1,690,632 | A→G | Y78H (TAT→CAT) | uidC ← | membrane‑associated protein |
RA | 1,692,491 | G→A | R535R (CGC→CGT) | uidA ← | beta‑D‑glucuronidase |
RA | 1,710,827 | T→C | V12A (GTC→GCC) | ydgR → | putative transport protein |
RA | 1,718,191 | A→G | T98A (ACT→GCT) | slyB → | putative outer membrane protein |
RA | 1,718,640 | A→G | L72P (CTG→CCG) | slyA ← | SlyA |
RA | 1,722,918 | T→A | N247Y (AAC→TAC) | b1647 ← | hypothetical protein |
RA | 1,729,429 | G→A | S773S (TCG→TCA) | lhr → | Lhr |
RA | 1,739,051 | A→G | M373V (ATG→GTG) | ydhC → | putative transport protein |
RA | 1,741,574 | 2 bp→GA | coding (94‑95/1374 nt) | ydhE → | putative transport protein |
RA | 1,753,667 | T→C | intergenic (‑502/‑55) | b1675 ← / → pykF | hypothetical protein/pyruvate kinase I |
RA | 1,754,991 | A→G | T424A (ACT→GCT) | pykF → | pyruvate kinase I |
RA | 1,756,526 | A→G | V75A (GTG→GCG) | ynhG ← | hypothetical protein |
RA | 1,763,263 | T→C | T132A (ACG→GCG) | b1686 ← | hypothetical protein |
RA | 1,764,440 | A→G | V757A (GTC→GCC) | ydiJ ← | putative oxidase |
RA | 1,765,259 | T→C | D484G (GAC→GGC) | ydiJ ← | putative oxidase |
RA | 1,774,277 | A→G | M223V (ATG→GTG) | ydiF → | hypothetical protein |
RA | 1,786,195 | T→C | L243L (TTG→CTG) | ydiA → | hypothetical protein |
RA | 1,788,259 | G→A | T337M (ACG→ATG) | b1706 ← | hypothetical protein |
RA | 1,801,157 | T→C | S14P (TCT→CCT) | b1721m → | ankyrin repeat protein |
RA | 1,804,740 | A→G | D117G (GAT→GGT) | pfkB → | 6‑phosphofructokinase II |
RA | 1,807,191 | G→A | P23S (CCT→TCT) | b1726 ← | hypothetical protein |
RA | 1,809,082 | T→C | V42A (GTT→GCT) | b1729 → | hypothetical protein |
RA | 1,810,386 | C→T | T261T (ACG→ACA) | b1730 ← | hypothetical protein |
RA | 1,812,482 | T→C | F198L (TTC→CTC) | katE → | catalase |
RA | 1,815,038 | T→C | Q41R (CAG→CGG) | ydjC ← | hypothetical protein |
RA | 1,820,066 | A→G | I72T (ATC→ACC) | osmE ← | OsmE |
RA | 1,830,970 | T→C | R173R (CGT→CGC) | xthA → | exonuclease III |
RA | 1,837,763 | T→C | H91H (CAT→CAC) | b1757 → | putative thiosulfate sulfur transferase |
RA | 1,841,925 | T→C | H324R (CAC→CGC) | b1762 ← | hypothetical protein |
RA | 1,860,370 | T→C | E28E (GAA→GAG) | yeaA ← | hypothetical protein |
RA | 1,866,414 | T→C | Y495H (TAT→CAT) | yeaG → | hypothetical protein |
RA | 1,868,990 | G→A | T194T (ACG→ACA) | yeaI → | hypothetical protein |
RA | 1,870,206 | T→C | S108P (TCC→CCC) | yeaJ → | hypothetical protein |
RA | 1,913,489 | A→G | C24R (TGT→CGT) | proQ ← | ProQ |
RA | 1,920,591 | T→C | T135A (ACC→GCC) | b1838 ← | protein phosphatase 1 |
RA | 1,971,922 | T→C | D476G (GAC→GGC) | cheA ← | CheA |
MC JC | 1,976,527 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
RA | 1,980,940 | +C | coding (1/363 nt) coding (627/627 nt) |
araH ← araH ← |
ABC‑type arabinose transport system permease component ABC‑type arabinose transport system permease component |
RA | 1,982,323 | C→T | G257D (GGC→GAC) | araG ← | ATP‑binding component of high‑affinity L‑arabinose transport system |
RA | 2,008,480 | +A | coding (637/654 nt) | yedK → | hypothetical protein |
RA | 2,019,024 | T→C | Y306H (TAT→CAT) | fliM → | FliM |
RA | 2,026,185 | C→T | intergenic (‑131/+25) | b1956 ← / ← b1957 | hypothetical protein/hypothetical protein |
RA | 2,043,272 | A→G | S130G (AGT→GGT) | b1978 → | hypothetical protein |
RA | 2,051,650 | A→G | intergenic (‑300/‑15) | b1980 ← / → shiA | hypothetical protein/putative transport protein, shikimate |
RA | 2,072,030 | T→A | C824S (TGC→AGC) | b2000 → | outer membrane fluffing protein |
RA | 2,078,590 | G→A | S8S (AGC→AGT) | yeeA ← | hypothetical protein |
RA | 2,080,143 | C→T | G145S (GGT→AGT) | dacD ← | penicillin binding protein 6b |
RA | 2,080,595 | A→G | intergenic (‑20/‑183) | dacD ← / → sbcB | penicillin binding protein 6b/exonuclease I |
RA | 2,115,417 | T→C | H337R (CAC→CGC) | wcaK ← | putative galactokinase |
RA | 2,118,886 | T→C | T231A (ACC→GCC) | wcaJ ← | putative colanic acid biosynthsis UDP‑glucose lipid carrier transferase |
RA | 2,134,357 | C→T | P303P (CCG→CCA) | wza ← | putative polysaccharide export protein |
RA | 2,179,549 | T→C | L145P (CTG→CCG) | b2100 → | putative kinase |
RA | 2,213,926 | T→C | T191A (ACG→GCG) | yehW ← | putative transport system permease protein |
RA | 2,216,746 | G→C | S252S (TCC→TCG) | yehZ ← | putative transport system permease protein |
RA | 2,235,117 | C→T | A219A (GCG→GCA) | mglC ← | MglC |
RA | 2,241,691 | G→A | intergenic (‑19/‑239) | folE ← / → yeiG | GTP cyclohydrolase I/putative esterase |
RA | 2,243,793 | T→C | T333A (ACG→GCG) | cirA ← | CirA |
RA | 2,265,062 | C→T | F266F (TTC→TTT) | yeiQ → | putative oxidoreductase |
RA | 2,266,433 | T→C | R195R (CGT→CGC) | yeiR → | hypothetical protein |
RA | 2,267,467 | T→C | G198G (GGT→GGC) | b2174 → | hypothetical protein |
RA | 2,273,779 | (G)5→6 | coding (487/1026 nt) | yejE → | putative transport system permease protein |
RA | 2,313,133 | T→C | P542P (CCT→CCC) | yojN → | putative 2‑component sensor protein |
RA | 2,315,162 | T→C | Q896R (CAG→CGG) | rcsC ← | RcsC |
RA | 2,341,770 | G→A | G140G (GGC→GGT) | yfaL ← | putative ATP‑binding component of a transport system |
RA | 2,342,081 | A→G | Y37H (TAT→CAT) | yfaL ← | putative ATP‑binding component of a transport system |
RA | 2,352,506 | T→C | H74H (CAT→CAC) | glpB → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
RA | 2,375,359 | T→C | Y85C (TAC→TGC) | yfbB ← | hyptothetical protein |
RA | 2,383,620 | C→T | V41V (GTG→GTA) | yfbK ← | hypothetical protein |
RA | 2,391,634 | A→G | V478A (GTG→GCG) | nuoL ← | NADH dehydrogenase I chain L |
RA | 2,422,395 | A→G | S45S (AGT→AGC) | hisP ← | ATP‑binding component of histidine transport |
RA | 2,429,483 | T→C | E65E (GAA→GAG) | dedD ← | putative lipoprotein |
RA | 2,449,273 | A→G | L111P (CTG→CCG) | b2335 ← | putative fimbrial protein |
RA | 2,473,878 | G→A | P116P (CCG→CCA) | b2362 → | hypothetical protein |
RA | 2,483,335 | (C)6→7 | coding (942/3594 nt) | evgS → | EvgS |
RA | 2,488,636 | T→C | E445E (GAA→GAG) | b2373 ← | hypothetical protein |
RA | 2,495,116 | T→C | L400L (CTA→CTG) | b2379 ← | putative aminotransferase |
RA | 2,502,384 | T→C | N41S (AAC→AGC) | b2383 ← | putative PTS system enzyme IIA component, enzyme I |
RA | 2,515,923 | A→G | intergenic (‑71/+138) | b2395 ← / ← alaX | hypothetical protein/tRNA‑Ala |
RA | 2,552,922 | T→C | N94S (AAC→AGC) | yfeG ← | putative ARAC‑type regulatory protein |
RA | 2,563,766 | A→G | V380A (GTG→GCG) | b2451 ← | hypothetical protein |
RA | 2,586,147 | A→G | Y178C (TAT→TGT) | acrD → | AcrD |
RA | 2,610,050 | T→C | L44P (CTG→CCG) | b2491 → | HyfR |
RA | 2,613,759 | A→G | L48P (CTG→CCG) | perM ← | putative permease |
RA | 2,618,556 | A→G | Y122H (TAC→CAC) | upp ← | uracil phosphoribosyltransferase |
RA | 2,621,342 | C→T | G93G (GGC→GGT) | ppk → | polyphosphate kinase |
RA | 2,635,451 | G→A | intergenic (‑36/+43) | b2511 ← / ← b2512 | putative GTP‑binding factor/putative dehydrogenase |
RA | 2,637,565 | G→A | A344V (GCT→GTT) | hisS ← | histidine tRNA synthetase |
RA | 2,647,829 | T→C | T827A (ACG→GCG) | b2520 ← | hypothetical protein |
RA | 2,650,396 | T→C | intergenic (‑89/‑118) | b2520 ← / → b2521 | hypothetical protein/putative thiosulfate sulfur transferase |
RA | 2,656,601 | T→C | T119A (ACG→GCG) | hscA ← | HscA |
RA | 2,658,670 | T→C | E294E (GAA→GAG) | b2530 ← | putative aminotransferase |
RA | 2,660,690 | A→G | R218R (CGT→CGC) | b2532 ← | putative ATP synthase beta subunit |
RA | 2,667,330 | T→C | S93S (AGT→AGC) | hcaA1 → | large terminal subunit of phenylpropionate dioxygenase |
RA | 2,691,024 | A→T | F847Y (TTT→TAT) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
RA | 2,707,029 | T→C | E132E (GAA→GAG) | rseA ← | sigma‑E factor |
RA | 2,729,373 | +C | intergenic (‑195/+247) | rrsG ← / ← clpB | 16S ribosomal RNA/ClpB |
RA | 2,747,389 | Δ1 bp | coding (572/591 nt) | b4540 → | hypothetical protein |
RA | 2,748,385 | A→G | D115D (GAT→GAC) | grpE ← | GrpE |
RA | 2,751,091 | G→C | A426P (GCT→CCT) | recN → | RecN |
RA | 2,764,178 | G→A | L80L (CTG→CTA) | yfjN → | putative cell division protein |
RA | 2,766,382 | C→G | P218A (CCC→GCC) | b2632 → | putative GTP‑binding protein |
RA | 2,766,423 | G→A | R231R (CGG→CGA) | b2632 → | putative GTP‑binding protein |
RA | 2,766,427 | 2 bp→AC | coding (697‑698/864 nt) | b2632 → | putative GTP‑binding protein |
RA | 2,766,473 | A→G | D248G (GAT→GGT) | b2632 → | putative GTP‑binding protein |
RA | 2,766,475 | A→G | T249A (ACC→GCC) | b2632 → | putative GTP‑binding protein |
RA | 2,781,020 | +G | intergenic (‑144/+65) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
RA | 2,781,027 | C→G | intergenic (‑151/+58) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
RA | 2,782,327 | T→C | V41V (GTA→GTG) | b2649 ← | hypothetical protein |
RA | 2,785,180 | Δ1 bp | coding (413/495 nt) | b2655 → | hypothetical protein |
RA | 2,786,585 | G→A | G63D (GGC→GAC) | b2658 → | hypothetical protein |
RA | 2,787,653 | G→A | A216A (GCG→GCA) | b2659 → | hypothetical protein |
RA | 2,801,986 | T→C | V155A (GTG→GCG) | nrdF → | ribonucleoside‑diphosphate reductase 2 beta chain |
RA | 2,803,648 | T→C | S271S (AGT→AGC) | proV → | ATP‑binding component of transport system for glycine, betaine and proline |
RA | 2,812,859 | Δ1 bp | intergenic (‑105/+46) | ygaG ← / ← gshA | hypothetical protein/gamma‑glutamate‑cysteine ligase |
RA | 2,816,853 | T→C | intergenic (‑186/+130) | serV ← / ← csrA | tRNA‑Ser/CsrA |
RA | 2,819,446 | G→C | G196G (GGC→GGG) | alaS ← | alanyl‑tRNA synthetase |
RA | 2,820,144 | Δ1 bp | intergenic (+24/+18) | b4542 → / ← oraA | hypothetical protein/OraA |
RA | 2,822,501 | (C)6→7 | intergenic (‑132/+13) | ygaD ← / ← mltB | hypothetical protein/membrane‑bound lytic murein transglycosylase B |
RA | 2,823,915 | A→G | K21E (AAG→GAG) | srlA → | PTS system, glucitol/sorbitol‑specific IIC component |
RA | 2,824,797 | T→C | F128S (TTT→TCT) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
RA | 2,825,102 | T→C | F230L (TTC→CTC) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
RA | 2,838,044 | +G | coding (498/1458 nt) | ascF → | PTS system enzyme IIBC |
RA | 2,838,055 | Δ1 bp | coding (509/1458 nt) | ascF → | PTS system enzyme IIBC |
RA | 2,839,652 | C→T | L214L (CTG→TTG) | ascB → | 6‑phospho‑beta‑glucosidase |
RA | 2,842,033 | G→T | R67R (CGC→CGA) | hycG ← | hydrogenase activity |
RA | 2,857,315 | C→T | Q734* (CAG→TAG) | mutS → | MutS |
MC JC | 2,875,936 | Δ61 bp | intergenic (+295/+596) | iap → / ← ygbF | Iap/hypothetical protein |
RA | 2,885,719 | T→C | D206G (GAT→GGT) | cysH ← | 3'‑phosphoadenosine 5'‑phosphosulfate reductase |
RA | 2,896,819 | +C | coding (622/657 nt) | ygcU ← | putative oxidoreductase subunit |
RA | 2,898,328 | (A)9→8 | intergenic (‑33/‑286) | b2774 ← / → yqcE | putative oxidoreductase/putative transport protein |
RA | 2,898,541 | T→C | intergenic (‑246/‑73) | b2774 ← / → yqcE | putative oxidoreductase/putative transport protein |
RA | 2,898,589 | (T)8→7 | intergenic (‑294/‑25) | b2774 ← / → yqcE | putative oxidoreductase/putative transport protein |
RA | 2,905,601 | A→G | A121A (GCT→GCC) | eno ← | enolase |
RA | 2,907,285 | T→C | D135G (GAC→GGC) | pyrG ← | CTP synthetase |
RA | 2,907,490 | C→T | A67T (GCT→ACT) | pyrG ← | CTP synthetase |
RA | 2,908,853 | T→C | G87G (GGA→GGG) | chpA ← | ChpA |
RA | 2,929,613 | A→G | V179V (GTA→GTG) | b2798 → | Exo |
RA | 2,964,753 | T→C | A568A (GCA→GCG) | ptsP ← | PtsP |
RA | 2,974,333 | (A)8→7 | intergenic (‑297/‑288) | aas ← / → galR | 2‑acyl‑glycerophospho‑ethanolamine acyltransferase/GalR |
RA | 2,974,569 | C→T | intergenic (‑533/‑52) | aas ← / → galR | 2‑acyl‑glycerophospho‑ethanolamine acyltransferase/GalR |
RA | 2,977,924 | A→G | L294L (TTA→TTG) | lysR → | LysR |
RA | 3,005,399 | +C | coding (1044/1092 nt) | ygeW → | putative carbamoyl transferase |
RA | 3,025,676 | +C | coding (535/570 nt) | ygfQ → | hypothetical protein |
RA | 3,029,284 | T→C | intergenic (‑318/‑34) | ygfT ← / → ygfU | putative oxidoreductase Fe‑S subunit/putative permease |
RA | 3,030,523 | A→G | R402R (CGA→CGG) | ygfU → | putative permease |
RA | 3,038,976 | C→T | E39K (GAA→AAA) | ygfY ← | hypothetical protein |
RA | 3,059,022 | T→C | G51G (GGT→GGC) | sbm → | methylmalonyl‑CoA mutase |
RA | 3,072,672 | T→C | Q13R (CAG→CGG) | yggC ← | putative kinase |
RA | 3,075,220 | (T)5→6 | coding (256/357 nt) | yggP ← | hypothetical protein |
RA | 3,077,514 | Δ1 bp | intergenic (‑165/+149) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
RA | 3,077,640 | +G | intergenic (‑291/+23) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
RA | 3,077,905 | A→G | S584P (TCG→CCG) | tktA ← | transketolase 1 isozyme |
RA | 3,078,245 | C→G | G470G (GGG→GGC) | tktA ← | transketolase 1 isozyme |
RA | 3,099,661 | (A)5→6 | intergenic (‑19/+164) | yggN ← / ← b2959 | hypothetical protein/hypothetical protein |
RA | 3,107,469 | +C | intergenic (‑296/‑101) | b2965 ← / → yqgA | ornithine decarboxylase isozyme/putative transport protein |
RA | 3,108,438 | C→A | noncoding (56/76 nt) | pheV → | tRNA‑Phe |
RA | 3,115,116 | +C | coding (2013/2028 nt) | b2974 ← | putative endoglucanase |
RA | 3,117,911 | A→G | V462A (GTA→GCA) | yghK ← | putative permease |
RA | 3,117,945 | G→A | P451S (CCG→TCG) | yghK ← | putative permease |
RA | 3,123,585 | +G | coding (953/2286 nt) | glcF ← | glycolate oxidase iron‑sulfur subunit |
RA | 3,125,033 | G→A | A335V (GCC→GTC) | glcD ← | glycolate oxidase subunit D |
RA | 3,130,334 | A→G | V30V (GTT→GTC) | b2983 ← | hypothetical protein |
RA | 3,138,885 | T→C | E139E (GAA→GAG) | hybD ← | putative processing element for hydrogenase‑2 |
RA | 3,143,485 | T→C | K264K (AAA→AAG) | b2997 ← | putative hydrogenase subunit |
RA | 3,152,247 | +C | intergenic (+10/+29) | yghB → / ← yqhC | hypothetical protein/putative ARAC‑type regulatory protein |
JC | 3,156,257 | (CCA)2→1 | coding (594‑596/930 nt) | yqhG → | hypothetical protein |
RA | 3,157,555 | T→C | K536E (AAG→GAG) | ygiRQ ← | Fe‑S oxidoreductase |
RA | 3,158,202 | +C | coding (961/975 nt) | ygiRQ ← | Fe‑S oxidoreductase |
RA | 3,166,935 | 2 bp→CG | coding (312‑313/483 nt) | b3023 ← | hypothetical protein |
RA | 3,185,776 | T→C | F121L (TTC→CTC) | yqiG → | putative membrane protein |
RA | 3,185,807 | T→C | F131S (TTT→TCT) | yqiG → | putative membrane protein |
RA | 3,197,191 | T→C | Q31R (CAG→CGG) | glnE ← | GlnE |
RA | 3,203,865 | C→T | L11L (TTG→TTA) | ygiP ← | putative transcriptional regulator LYSR‑type |
RA | 3,207,904 | A→G | V94A (GTG→GCG) | ygjD ← | putative O‑sialoglycoprotein endopeptidase |
RA | 3,221,097 | 2 bp→GC | coding (824‑825/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
RA | 3,222,944 | 4 bp→AGCA | coding (2671‑2674/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
RA | 3,224,879 | Δ1 bp | coding (1005/1434 nt) | ygjI → | putative oxidoreductase |
RA | 3,224,926 | +C | coding (1052/1434 nt) | ygjI → | putative oxidoreductase |
RA | 3,236,177 | Δ1 bp | intergenic (+239/‑45) | ygjR → / → ygjT | hypothetical protein/putative transport protein |
RA | 3,236,735 | +C | coding (514/966 nt) | ygjT → | putative transport protein |
RA | 3,236,758 | Δ1 bp | coding (537/966 nt) | ygjT → | putative transport protein |
RA | 3,237,242 | +C | intergenic (+55/‑342) | ygjT → / → ygjU | putative transport protein/putative transport protein |
RA | 3,237,247 | +C | intergenic (+60/‑337) | ygjT → / → ygjU | putative transport protein/putative transport protein |
RA | 3,249,311 | G→A | S216S (TCG→TCA) | yqjG → | putative transferase |
RA | 3,253,742 | Δ1 bp | coding (551/552 nt) | yhaNM ← | hypothetical protein |
RA | 3,255,594 | Δ1 bp | coding (4/1278 nt) | yhaO ← | putative transport system permease protein |
RA | 3,255,616 | Δ1 bp | intergenic (‑19/+312) | yhaO ← / ← yhaP | putative transport system permease protein/putative L‑serine dehydratase |
RA | 3,256,893 | +C | coding (405/423 nt) | yhaQ ← | putative L‑serine dehydratase |
RA | 3,257,838 | +G | coding (2222/2241 nt) | tdcE ← | putative formate acetyltransferase 3 |
RA | 3,279,197 | A→C | R145S (AGA→AGC) | agaA → | putative N‑acetylgalactosamine‑6‑phosphate deacetylase |
RA | 3,295,019 | T→C | D254G (GAT→GGT) | yraQ ← | hypothetical protein |
RA | 3,298,112 | T→C | G96G (GGA→GGG) | yhbS ← | hypothetical protein |
RA | 3,312,970 | T→C | H229R (CAC→CGC) | infB ← | protein chain initiation factor IF‑2 |
RA | 3,333,863 | A→G | R91R (CGT→CGC) | murA ← | UDP‑N‑glucosamine 1‑carboxyvinyltransferase |
RA | 3,336,835 | T→C | T19A (ACG→GCG) | yrbE ← | hypothetical protein |
RA | 3,342,306 | T→C | L241P (CTC→CCC) | yhbG → | putative ATP‑binding component of a transport system |
RA | 3,352,254 | 2 bp→GC | intergenic (‑569/‑12) | yhcC ← / → gltB | hypothetical protein/glutamate synthase large subunit |
RA | 3,374,875 | T→G | T61P (ACC→CCC) | sspA ← | stringent starvation protein A |
RA | 3,389,812 | Δ1 bp | intergenic (‑149/+4151) | tldD ← / ← cafA | TldD/CafA |
RA | 3,393,106 | Δ1 bp | intergenic (‑3443/+857) | tldD ← / ← cafA | TldD/CafA |
RA | 3,418,840 | +G | coding (1070/1089 nt) | b3269 → | putative transport system permease protein |
RA | 3,421,120 | Δ1 bp | noncoding (60/121 nt) | rrfF ← | 5S ribosomal RNA |
RA | 3,429,527 | Δ1 bp | coding (40/510 nt) | yrdD ← | putative DNA topoisomerase |
RA | 3,430,453 | +C | coding (745/747 nt) | smf ← | putative Rossmann‑fold nucleotide‑binding protein |
RA | 3,442,615 | A→G | P84P (CCT→CCC) | rpsE ← | 30S ribosomal subunit protein S5 |
RA | 3,452,089 | T→C | Q316R (CAG→CGG) | yheD ← | YheD |
RA | 3,453,670 | T→C | T152T (ACT→ACC) | yheE → | YheE |
RA | 3,465,851 | T→C | Y547C (TAC→TGC) | yheB ← | hypothetical protein |
RA | 3,472,030 | G→A | R54C (CGT→TGT) | rpsL ← | 30S ribosomal subunit protein S12 |
RA | 3,500,309 | Δ1 bp | coding (333/363 nt) | b3372 → | hypothetical protein |
RA | 3,509,958 | Δ1 bp | intergenic (‑195/+314) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
RA | 3,510,121 | +G | intergenic (‑358/+151) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
RA | 3,537,405 | +GC | intergenic (+61/‑394) | b3407 → / → feoA | hypothetical protein/ferrous iron transport protein A |
RA | 3,542,050 | A→G | L144P (CTG→CCG) | bioH ← | BioH |
RA | 3,544,357 | +G | coding (163/1314 nt) | gntT → | gluconate permease |
RA | 3,544,360 | +G | coding (166/1314 nt) | gntT → | gluconate permease |
RA | 3,544,363 | +C | coding (169/1314 nt) | gntT → | gluconate permease |
RA | 3,548,005 | C→T | G701D (GGT→GAT) | malP ← | maltodextrin phosphorylase |
RA | 3,550,199 | A→G | intergenic (‑93/‑519) | malP ← / → malT | maltodextrin phosphorylase/MalT |
RA | 3,554,088 | +C | coding (2/624 nt) | yhgKJ ← | RNA phosphage cyclase |
RA | 3,554,113 | Δ1 bp | coding (372/396 nt) | yhgKJ ← | RNA phosphage cyclase |
RA | 3,554,118 | +C | coding (367/396 nt) | yhgKJ ← | RNA phosphage cyclase |
RA | 3,558,932 | 2 bp→GC | coding (153‑154/831 nt) | glpG ← | GlpG |
RA | 3,573,700 | +C | intergenic (+403/+997) | yhgN → / ← gntK | hypothetical protein/gluconokinase 2 |
RA | 3,575,446 | +G | coding (912/942 nt) | gntR ← | GntR |
RA | 3,578,561 | (A)9→8 | intergenic (‑125/‑208) | yhhX ← / → yhhY | putative regulator/hypothetical protein |
RA | 3,580,830 | T→C | S54S (AGT→AGC) | yrhA → | hypothetical protein |
RA | 3,582,212 | T→C | intergenic (+22/‑178) | b4547 → / → yrhB | hypothetical protein/hypothetical protein |
RA | 3,584,676 | A→G | S35G (AGC→GGC) | yhhA → | hypothetical protein |
RA | 3,592,609 | A→G | L168P (CTG→CCG) | livM ← | LivM |
RA | 3,627,142 | +G | intergenic (‑24/+23) | yhiH ← / ← yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
RA | 3,634,770 | T→C | I91V (ATC→GTC) | yhiN ← | hypothetical protein |
RA | 3,659,028 | A→G | T329A (ACC→GCC) | yhiV → | putative transport system permease protein |
RA | 3,663,106 | A→G | L112P (CTA→CCA) | yhiX ← | putative ARAC‑type regulatory protein |
RA | 3,666,733 | T→C | H29R (CAC→CGC) | yhjA ← | putative cytochrome C peroxidase |
RA | 3,667,459 | G→A | D80N (GAC→AAC) | treF → | cytoplasmic trehalase |
RA | 3,673,861 | A→G | intergenic (+123/+59) | yhjE → / ← yhjG | putative transport protein/hypothetical protein |
RA | 3,674,812 | (T)6→5 | coding (1184/2076 nt) | yhjG ← | hypothetical protein |
RA | 3,686,256 | A→G | L166P (CTG→CCG) | b3530 ← | putative oxidoreductase subunit |
RA | 3,686,775 | +T | intergenic (‑23/+9) | b3530 ← / ← yhjM | putative oxidoreductase subunit/putative endoglucanase |
RA | 3,687,487 | T→C | Q135R (CAG→CGG) | yhjM ← | putative endoglucanase |
RA | 3,698,071 | T→C | intergenic (+549/‑121) | yhjU → / → yhjV | hypothetical protein/putative transporter protein |
RA | 3,703,602 | 2 bp→GC | intergenic (‑183/+124) | dppB ← / ← dppA | dipeptide transport system permease protein 1/dipeptide transport protein |
RA | 3,707,190 | (C)6→7 | coding (948/1725 nt) | yhjW ← | hypothetical protein |
RA | 3,714,436 | 2 bp→GC | coding (261‑262/660 nt) | yiaD → | putative outer membrane protein |
RA | 3,715,348 | A→G | D141G (GAC→GGC) | yiaE → | putative dehydrogenase |
RA | 3,718,305 | T→C | intergenic (‑76/‑4) | yiaZ ← / → yi5A | putative membrane permeability altering protein/IS150 hypothetical protein |
RA | 3,734,264 | 2 bp→GC | coding (542‑543/825 nt) | bax ← | putative ATP‑binding protein |
RA | 3,736,298 | T→C | N391N (AAT→AAC) | malS → | alpha‑amylase |
RA | 3,737,956 | 2 bp→CG | coding (623‑624/1254 nt) | avtA → | alanine‑alpha‑ketoisovalerate transaminase |
RA | 3,743,603 | Δ1 bp | coding (1171/1275 nt) | yiaN → | putative membrane protein |
RA | 3,754,310 | C→A | R382M (AGG→ATG) | yiaY ← | putative oxidoreductase |
JC | 3,754,317 | +GCG | coding (1138/1149 nt) | yiaY ← | putative oxidoreductase |
RA | 3,759,803 | A→G | intergenic (‑221/‑7) | yibF ← / → rhsA | putative S‑transferase/RhsA |
RA | 3,765,203 | A→T | Q119L (CAG→CTG) | yibJ → | hypothetical protein |
RA | 3,765,234 | G→A | G129G (GGG→GGA) | yibJ → | hypothetical protein |
RA | 3,782,932 | T→C | Y16H (TAT→CAT) | yibO → | putative 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
RA | 3,790,609 | G→A | D239D (GAC→GAT) | htrL ← | HtrL |
RA | 3,799,298 | T→C | Y110C (TAC→TGC) | rfaJ ← | UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase |
RA | 3,810,753 | T→C | A132A (GCT→GCC) | b3639 → | Dfp |
RA | 3,824,873 | G→A | L679L (CTG→CTA) | recG → | DNA helicase |
RA | 3,832,048 | A→G | R39R (CGT→CGC) | yicI ← | hypothetical protein |
RA | 3,870,631 | Δ1 bp | coding (610/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
RA | 3,870,765 | +G | coding (476/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
RA | 3,870,876 | Δ1 bp | coding (365/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
RA | 3,872,450 | +G | coding (338/387 nt) | yidW ← | regulator protein for dgo operon |
RA | 3,873,627 | Δ1 bp | coding (506/672 nt) | yidX → | putative replicase |
RA | 3,874,594 | A→G | intergenic (‑14/+101) | yidA ← / ← b3698 | hypothetical protein/hypothetical protein |
RA | 3,876,595 | G→C | P385A (CCG→GCG) | gyrB ← | DNA gyrase subunit B |
RA | 3,881,483 | Δ1 bp | intergenic (‑126/‑482) | dnaA ← / → rpmH | DnaA/50S ribosomal subunit protein L34 |
RA | 3,889,795 | G→A | A184A (GCG→GCA) | yidY → | putative transport protein |
RA | 3,891,703 | T→C | L69P (CTG→CCG) | yieE → | hypothetical protein |
RA | 3,896,196 | T→C | C182C (TGT→TGC) | yieJ → | hypothetical protein |
RA | 3,896,324 | +G | coding (698/711 nt) | b3718 ← | putative isomerase |
RA | 3,903,427 | G→A | R257C (CGT→TGT) | bglG ← | BglG |
RA | 3,905,202 | T→C | D2G (GAC→GGC) | phoU ← | PhoU |
RA | 3,909,645 | T→C | D551G (GAT→GGT) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,923,268 | T→C | intergenic (‑7/+372) | gidA ← / ← mioC | glucose‑inhibited division/MioC |
RA | 3,927,062 | +G | coding (2/1284 nt) coding (169/183 nt) |
yieM ← b4564 ← |
hypothetical protein hypothetical protein |
RA | 3,927,292 | A→G | W477R (TGG→CGG) | yieN ← | putative 2‑component regulator |
RA | 3,928,363 | C→T | G120S (GGC→AGC) | yieN ← | putative 2‑component regulator |
RA | 3,928,669 | A→G | L18L (TTG→CTG) | yieN ← | putative 2‑component regulator |
RA | 3,930,457 | Δ1 bp | coding (1515/1560 nt) | kup → | low affinity potassium transport system |
RA | 3,930,568 | +G | intergenic (+66/‑373) | kup → / → rbsD | low affinity potassium transport system/RbsD |
RA | 3,930,677 | +G | intergenic (+175/‑264) | kup → / → rbsD | low affinity potassium transport system/RbsD |
RA | 3,932,295 | C→T | L298F (CTC→TTC) | rbsA → | ATP‑binding component of D‑ribose high‑affinity transport system |
JC | 3,938,587 | +TGC | coding (220/546 nt) | yiePs ← | hypothetical protein |
RA | 3,941,734 | Δ1 bp | noncoding (409/2906 nt) | rrlC → | 23S ribosomal RNA |
RA | 3,944,244 | C→A | intergenic (+13/‑80) | rrlC → / → rrfC | 23S ribosomal RNA/5S ribosomal RNA |
RA | 3,944,676 | 2 bp→GC | intergenic (+20/+75) | trpT → / ← yifDA | tRNA‑Trp/transcription regulator |
RA | 3,945,351 | +C | coding (1/600 nt) coding (240/240 nt) |
yifDA ← yifDA ← |
transcription regulator transcription regulator |
RA | 3,945,882 | A→G | K58K (AAA→AAG) | yifE → | hypothetical protein |
RA | 3,948,087 | G→A | intergenic (+44/‑96) | ilvL → / → ilvG | ilvGEDA operon leader peptide/acetolactate synthase II large subunit |
RA | 3,950,557 | 2 bp→GC | coding (451‑452/930 nt) | ilvE → | branched‑chain amino‑acid aminotransferase |
RA | 3,951,166 | +C | coding (35/1818 nt) | ilvD → | dihydroxyacid dehydratase |
RA | 3,951,168 | +G | coding (37/1818 nt) | ilvD → | dihydroxyacid dehydratase |
RA | 3,951,478 | C→T | P116L (CCG→CTG) | ilvD → | dihydroxyacid dehydratase |
RA | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
RA | 3,957,124 | +G | intergenic (+58/+26) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
RA | 3,957,548 | 1 bp→GG | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
RA | 3,957,551 | +T | intergenic (‑120/‑741) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
RA | 3,957,560 | +C | intergenic (‑129/‑732) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
RA | 3,958,877 | 2 bp→CG | coding (586‑587/2022 nt) | rep → | rep helicase |
RA | 3,959,281 | G→A | E330E (GAG→GAA) | rep → | rep helicase |
RA | 3,960,578 | 2 bp→CG | coding (1266‑1267/1485 nt) | gppA ← | guanosine pentaphosphatase |
RA | 3,961,588 | C→G | R86T (AGG→ACG) | gppA ← | guanosine pentaphosphatase |
RA | 3,965,750 | T→C | S74P (TCT→CCT) | rfe → | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
JC | 3,968,317 | +CGT | coding (612/1170 nt) | wecB → | UDP‑N‑acetyl glucosamine ‑2‑epimerase |
RA | 3,968,795 | C→T | R364C (CGC→TGC) | wecB → | UDP‑N‑acetyl glucosamine ‑2‑epimerase |
RA | 3,969,103 | 2 bp→GC | coding (232‑233/1263 nt) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
RA | 3,971,075 | 2 bp→GC | coding (942‑943/1068 nt) | rffG → | dTDP‑glucose 4,6‑dehydratase |
RA | 3,971,621 | C→T | G134G (GGC→GGT) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,972,637 | 2 bp→GC | coding (430‑431/546 nt) | wecD → | hypothetical protein |
RA | 3,974,806 | C→T | A306V (GCG→GTG) | wzxE → | putative cytochrome |
RA | 3,975,313 | Δ1 bp | intergenic (+173/‑901) | wzxE → / → wecF | putative cytochrome/TDP‑Fuc4NAc:lipidII transferase |
RA | 3,978,702 | C→T | S68F (TCC→TTC) | yifK → | putative amino acid/amine transport protein |
RA | 3,979,535 | +G | coding (1036/1386 nt) | yifK → | putative amino acid/amine transport protein |
RA | 3,979,546 | Δ1 bp | coding (1047/1386 nt) | yifK → | putative amino acid/amine transport protein |
RA | 3,980,918 | 2 bp→CG | coding (348‑349/1236 nt) | aslB → | putative arylsulfatase regulator |
RA | 3,982,242 | T→C | N460S (AAC→AGC) | aslA ← | arylsulfatase |
RA | 3,987,586 | 2 bp→GC | coding (814‑815/963 nt) | hemC ← | porphobilinogen deaminase |
RA | 3,987,822 | 2 bp→CG | coding (578‑579/963 nt) | hemC ← | porphobilinogen deaminase |
RA | 3,991,616 | T→C | E19E (GAA→GAG) F52L (TTC→CTC) |
cyaY ← b3808 → |
hypothetical protein hypothetical protein |
RA | 3,992,871 | A→G | D167G (GAT→GGT) | dapF → | diaminopimelate epimerase |
RA | 3,996,531 | C→T | G312G (GGC→GGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
RA | 3,998,290 | +G | coding (379/486 nt) | b4566 ← | hypothetical protein |
RA | 4,001,421 | 2 bp→GC | coding (381‑382/903 nt) | rarD ← | hypothetical protein |
RA | 4,001,486 | 2 bp→GC | coding (316‑317/903 nt) | rarD ← | hypothetical protein |
RA | 4,001,717 | +C | coding (86/903 nt) | rarD ← | hypothetical protein |
RA | 4,004,979 | +G | coding (1511/1833 nt) | recQ → | ATP‑dependent DNA helicase |
RA | 4,004,984 | +CG | coding (1516/1833 nt) | recQ → | ATP‑dependent DNA helicase |
RA | 4,005,601 | +C | coding (237/282 nt) | b4568 → | hypothetical protein |
RA | 4,006,483 | +C | coding (183/207 nt) | b4554 ← | hypothetical protein |
RA | 4,007,718 | 2 bp→CG | coding (943‑944/1023 nt) | pldB → | lysophospholipase L(2) |
RA | 4,007,907 | +GG | intergenic (+109/‑11) | pldB → / → b4555 | lysophospholipase L(2)/hypothetical protein |
RA | 4,008,375 | +A | coding (458/516 nt) | b4555 → | hypothetical protein |
RA | 4,008,391 | +C | coding (474/516 nt) | b4555 → | hypothetical protein |
RA | 4,008,393 | C→G | A159G (GCT→GGT) | b4555 → | hypothetical protein |
RA | 4,008,400 | +GAAA | coding (483/516 nt) | b4555 → | hypothetical protein |
RA | 4,008,404 | +G | coding (487/516 nt) | b4555 → | hypothetical protein |
RA | 4,008,411 | +C | coding (494/516 nt) | b4555 → | hypothetical protein |
RA | 4,008,421 | +T | coding (504/516 nt) | b4555 → | hypothetical protein |
RA | 4,008,429 | +TG | coding (512/516 nt) | b4555 → | hypothetical protein |
RA | 4,008,469 | +G | intergenic (+36/‑197) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
RA | 4,008,473 | +G | intergenic (+40/‑193) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
RA | 4,008,491 | 2 bp→CG | intergenic (+58/‑174) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
RA | 4,008,525 | +G | intergenic (+92/‑141) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
RA | 4,012,830 | A→G | T730A (ACG→GCG) V297A (GTT→GCT) |
metE → ysgA ← |
tetrahydropteroyltriglutamate methyltransferase hypothetical protein |
RA | 4,013,176 | C→G | G182R (GGA→CGA) | ysgA ← | hypothetical protein |
RA | 4,013,177 | +C | coding (543/999 nt) | ysgA ← | hypothetical protein |
RA | 4,013,717 | +G | coding (3/999 nt) | ysgA ← | hypothetical protein |
RA | 4,013,772 | +C | intergenic (‑53/‑246) | ysgA ← / → udp | hypothetical protein/uridine phosphorylase |
RA | 4,016,743 | C→T | P101L (CCC→CTC) | ubiE → | UbiE |
RA | 4,019,857 | C→T | intergenic (+56/‑28) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
RA | 4,019,860 | Δ2 bp | intergenic (+59/‑24) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
RA | 4,021,157 | C→T | G9G (GGC→GGT) G5G (GGC→GGT) |
tatD → b4556 → |
Mg‑dependent DNase hypothetical protein |
RA | 4,021,684 | Δ1 bp | coding (542/609 nt)|coding (1/243 nt) | b4556 → tatD → |
hypothetical protein Mg‑dependent DNase |
RA | 4,026,252 | 2 bp→GC | coding (110‑111/1164 nt) | fadA ← | thiolase I |
RA | 4,031,984 | +C | coding (1250/1299 nt) | trkH → | TrkH |
RA | 4,038,298 | A→G | intergenic (+82/+188) | rrfA → / ← mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis protein B |
RA | 4,039,960 | Δ1 bp | intergenic (+42/‑36) | yihD → / → yihE | hypothetical protein/hypothetical protein |
RA | 4,041,654 | G→A | intergenic (+29/‑125) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
RA | 4,041,671 | (T)6→7 | intergenic (+46/‑108) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
RA | 4,050,464 | G→A | S282S (TCG→TCA) | hemN → | O2‑independent coproporphyrinogen III oxidase |
RA | 4,051,144 | Δ1 bp | intergenic (+146/+305) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
RA | 4,051,170 | +C | intergenic (+172/+279) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
RA | 4,055,398 | A→G | S73P (TCC→CCC) | glnA ← | glutamine synthetase |
RA | 4,057,759 | +C | coding (1773/1776 nt) | yihK → | putative GTP‑binding factor |
RA | 4,061,961 | Δ1 bp | coding (1386/1458 nt) | b3876 ← | putative permease |
RA | 4,075,331 | A→G | L101L (TTA→TTG) | yiiD → | putative acetyltransferase |
RA | 4,085,675 | Δ1 bp | intergenic (+38/+13) | yiiG → / ← frvR | hypothetical protein/putative frv operon regulatory protein |
RA | 4,089,527 | G→A | P141S (CCG→TCG) | frvB ← | PTS system, fructose‑like enzyme IIBC component |
RA | 4,091,351 | C→T | G168D (GGC→GAC) | rhaD ← | rhamnulose‑phosphate aldolase |
MC JC | 4,091,572 | 3461 bp→29 bp | [rhaD]–rhaB | [rhaD], rhaA, rhaB | |
RA | 4,101,591 | C→T | A322A (GCG→GCA) | cpxA ← | CpxA |
RA | 4,103,519 | +T | intergenic (‑268/‑530) | cpxR ← / → yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
RA | 4,133,368 | G→T | E652* (GAG→TAG) | katG → | catalase |
RA | 4,139,669 | +C | coding (233/330 nt) coding (132/159 nt) |
yijI → b4558 ← |
hypothetical protein hypothetical protein |
RA | 4,156,159 | A→G | T31A (ACG→GCG) | oxyR → | OxyR |
RA | 4,158,827 | G→T | G61V (GGC→GTC) | yijC → | hypothetical protein |
RA | 4,161,702 | C→G | A162G (GCA→GGA) | btuB → | BtuB |
RA | 4,172,320 | T→C | S96G (AGT→GGT) | coaA ← | pantothenate kinase |
RA | 4,175,751 | T→G | F144V (TTC→GTC) | nusG → | NusG |
RA | 4,175,949 | +G | intergenic (+82/‑76) | nusG → / → rplK | NusG/50S ribosomal subunit protein L11 |
RA | 4,177,426 | T→C | intergenic (+265/‑148) | rplA → / → rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
RA | 4,181,376 | G→A | A852T (GCT→ACT) | rpoB → | RNA polymerase beta subunit |
RA | 4,184,644 | A→G | T573A (ACT→GCT) | rpoC → | RNA polymerase beta prime subunit |
RA | 4,186,374 | T→C | R1149R (CGT→CGC) | rpoC → | RNA polymerase beta prime subunit |
RA | 4,194,577 | 2 bp→GC | coding (97‑98/774 nt) | yjaD → | hypothetical protein |
RA | 4,194,729 | A→G | G83G (GGA→GGG) | yjaD → | hypothetical protein |
RA | 4,196,394 | A→G | Q11Q (CAA→CAG) | nfi → | endonuclease V |
RA | 4,199,968 | G→A | A155A (GCG→GCA) | hydH → | HydH |
RA | 4,216,491 | T→C | V106A (GTG→GCG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
RA | 4,221,520 | T→C | R38R (CGT→CGC) | metH → | B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
RA | 4,224,890 | G→A | G1162S (GGC→AGC) | metH → | B12‑dependent homocysteine‑N5‑methyltetrahydrofolate transmethylase |
RA | 4,227,714 | A→G | L3P (CTG→CCG) | pepE ← | peptidase E |
RA | 4,229,642 | A→G | L391L (TTG→CTG) | lysC ← | aspartokinase III |
RA | 4,232,040 | A→G | H235R (CAC→CGC) | pgi → | glucosephosphate isomerase |
RA | 4,237,776 | T→C | intergenic (+467/‑128) | yjbH → / → yjbA | hypothetical protein/hypothetical protein |
RA | 4,254,178 | A→G | intergenic (‑133/‑38) | plsB ← / → dgkA | glycerol‑3‑phosphate acyltransferase/diacylglycerol kinase |
RA | 4,293,960 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate‑aspartate symport protein/hypothetical protein |
RA | 4,298,691 | A→G | V609A (GTC→GCC) | yjcQ ← | hypothetical protein |
RA | 4,307,521 | G→A | R347C (CGC→TGC) | yjcW ← | putative ATP‑binding component of a transport system |
RA | 4,311,496 | +C | coding (301/408 nt) | phnQ ← | hypothetical protein |
RA | 4,316,203 | T→A | Q47L (CAG→CTG) | phnK ← | ATP‑binding component of phosphonate transport |
RA | 4,319,415 | A→G | C196R (TGC→CGC) | phnF ← | putative transcriptional regulator |
RA | 4,347,223 | A→G | H130H (CAT→CAC) | yjdG ← | putative 2‑component transcriptional regulator |
RA | 4,387,877 | A→G | L21P (CTG→CCG) | psd ← | phosphatidylserine decarboxylase |
RA | 4,388,615 | A→G | V158A (GTG→GCG) | b4161 ← | hypothetical protein |
RA | 4,394,272 | C→T | P210P (CCC→CCT) | amiB → | N‑acetylmuramoyl‑l‑alanine amidase II |
RA | 4,416,484 | A→G | H242H (CAT→CAC) | yjfR ← | hypothetical protein |
RA | 4,429,526 | C→T | A12A (GCG→GCA) | ytfE ← | hypothetical protein |
RA | 4,435,684 | +A | coding (400/501 nt) | ytfI → | hypothetical protein |
RA | 4,448,541 | +C | intergenic (+46/‑92) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR |
RA | 4,448,543 | +C | intergenic (+48/‑90) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR |
RA | 4,449,738 | +G | coding (1106/1254 nt) | ytfR → | YtfR |
RA | 4,463,185 | A→G | G190G (GGT→GGC) | treB ← | PTS trehalose‑specific system enzyme IIBC |
RA | 4,463,718 | A→G | L13L (TTG→CTG) | treB ← | PTS trehalose‑specific system enzyme IIBC |
RA | 4,472,408 | A→G | intergenic (+117/‑28) | b4251 → / → b4252 | hypothetical protein/hypothetical protein |
RA | 4,474,826 | +A | intergenic (+1/+44) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
MC JC | 4,474,849 | 20 bp→30 bp | intergenic (+24/+2) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
RA | 4,477,041 | Δ1 bp | intergenic (‑151/‑269) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
RA | 4,477,068 | +C | intergenic (‑178/‑242) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
RA | 4,477,281 | Δ1 bp | intergenic (‑391/‑29) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
RA | 4,477,321 | Δ1 bp | coding (12/1182 nt) | yjgN → | hypothetical protein |
RA | 4,478,503 | (A)7→6 | intergenic (+12/+47) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
RA | 4,478,511 | Δ1 bp | intergenic (+20/+39) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
RA | 4,478,527 | Δ1 bp | intergenic (+36/+23) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
RA | 4,499,168 | C→T | intergenic (+11/+503) | yjgZ → / ← yi41 | hypothetical protein/IS4 hypothetical protein |
RA | 4,500,673 | C→T | T109T (ACG→ACA) | yi41 ← | IS4 hypothetical protein |
RA | 4,502,206 | A→G | E194G (GAG→GGG) | b4279 → | putative transport protein |
RA | 4,512,256 | A→G | S664P (TCC→CCC) | fecA ← | FecA |
RA | 4,522,123 | A→G | R152R (CGT→CGC) | b4298 ← | putative lyase/synthase |
RA | 4,531,089 | T→C | I88M (ATA→ATG) | yjhQ ← | hypothetical protein |
RA | 4,542,643 | Δ1 bp | intergenic (+46/‑22) | b4316 → / → fimD | Pil/FimD |
RA | 4,544,170 | T→C | I502I (ATT→ATC) | fimD → | FimD |
RA | 4,551,066 | A→G | V199V (GTA→GTG) | uxuB → | D‑mannonate oxidoreductase |
RA | 4,573,190 | Δ1 bp | coding (1487/1542 nt) | yjiU → | hypothetical protein |
RA | 4,576,170 | A→G | R246R (CGT→CGC) | mcrB ← | McrB |
RA | 4,577,071 | A→G | *114Q (TAA→CAA) | yjiW ← | hypothetical protein |
RA | 4,583,050 | G→A | Q446* (CAA→TAA) | hsdR ← | endonuclease R |
RA | 4,593,254 | 2 bp→GC | coding (59‑60/807 nt) | yjjM ← | hypothetical protein |
RA | 4,593,336 | +G | intergenic (‑23/‑208) | yjjM ← / → yjjN | hypothetical protein/putative oxidoreductase |
RA | 4,600,078 | C→T | W135* (TGG→TAG) | yjjP ← | putative structural protein |
RA | 4,603,664 | A→G | noncoding (71/88 nt) | leuV ← | tRNA‑Leu |
RA | 4,608,595 | 2 bp→GC | intergenic (+23/‑369) | prfC → / → osmY | peptide chain release factor RF‑3/OsmY |
RA | 4,614,238 | G→T | L133I (CTA→ATA) | yjjI ← | hypothetical protein |
RA | 4,621,505 | A→G | M61T (ATG→ACG) | lplA ← | lipoate‑protein ligase A |
RA | 4,629,559 | T→C | Y420H (TAC→CAC) | slt → | soluble lytic murein transglycosylase |
RA | 4,637,055 | A→G | S437G (AGT→GGT) | creD → | CreD |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 363478 | 365531 | 2054 | 145 [140] | [143] 146 | [lacZ] | [lacZ] |
* | * | ÷ | NC_000913 | 2518981–2519022 | 2519121–2519070 | 49–141 | 146 [143] | [143] 147 | [valU]–[valX] | [valU],[valX] |
* | * | ÷ | NC_000913 | 3421328–3421870 | 3422242–3421880 | 11–915 | 144 [140] | [141] 148 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
* | * | ÷ | NC_000913 | 3943590–3943811 | 3943811 | 1–222 | 144 [140] | [143] 145 | rrlC | 23S ribosomal RNA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 269765 = | NA (NA) | 245 (0.950) | 127/184 | 0.4 | 98.8% | coding (300/405 nt) | yi91a | hypothetical protein |
? | NC_000913 | = 370983 | 3 (0.010) | coding (536/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
* | ? | NC_000913 | = 279335 | NA (NA) | 281 (1.090) | 128/184 | 0.3 | 98.2% | coding (252/339 nt) | b4505 | hypothetical protein |
? | NC_000913 | 370982 = | 5 (0.020) | coding (535/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
* | ? | NC_000913 | 3192559 = | 286 (1.110) | 203 (0.990) +ATGTGTTAATGAAACCTTC |
82/146 | 1.7 | 50.1% | intergenic (+18/+402) | b3051/b3052 | putative membrane protein/putative kinase |
? | NC_000913 | = 3192916 | 226 (0.880) | intergenic (+375/+45) | b3051/b3052 | putative membrane protein/putative kinase | |||||
* | ? | NC_000913 | 3349258 = | 13 (0.050) | 303 (1.170) | 136/184 | 0.1 | 95.9% | coding (1403/2331 nt) | arcB | aerobic respiration sensor‑response protein |
? | NC_000913 | = 3349263 | NA (NA) | coding (1398/2331 nt) | arcB | aerobic respiration sensor‑response protein |