mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 287 | Δ1 bp | 6.2% | intergenic (+32/‑50) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 291 | A→T | 5.9% | intergenic (+36/‑46) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 293:1 | +G | 6.1% | intergenic (+38/‑44) | thrL → / → thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 44,943 | T→C | 5.0% | L255P (CTG→CCG) | fixC → | putative oxidoreductase |
| RA | 126,093 | T→C | 6.0% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 146,735 | T→C | 6.2% | intergenic (‑41/‑233) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 459,883 | T→A | 5.5% | D332E (GAT→GAA) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 459,886 | A→C | 5.7% | R333R (CGA→CGC) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 508,748 | C→A | 5.2% | intergenic (+189/+127) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 520,163 | C→T | 5.5% | P144L (CCG→CTG) | ybbA → | putative ABC transporter ATPase |
| JC JC | 564,107 | IS2 (+) +5 bp | 100% | coding (370‑374/633 nt) | sfmZ ← | response regulator family protein |
| RA | 604,753 | A→C | 5.3% | intergenic (‑90/+18) | ybdG ← / ← nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 605,022 | C→G | 5.9% | D135H (GAT→CAT) | nfsB ← | dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 605,025 | C→G | 5.9% | D134H (GAT→CAT) | nfsB ← | dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 612,487 | T→C | 6.0% | K3R (AAG→AGG) | fepA ← | ferrienterobactin outer membrane transporter |
| RA | 682,457 | G→A | 7.6% | Q313* (CAG→TAG) | hscC ← | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 747,141 | G→A | 6.8% | P210L (CCG→CTG) | abrB ← | regulator of aidB expression; inner membrane protein |
| RA | 753,079 | G→T | 5.5% | intergenic (‑284/+106) | ybgD ← / ← gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| RA | 756,623 | G→A | 33.3% | W239* (TGG→TGA) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 757,611 | C→T | 34.7% | R569* (CGA→TGA) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 757,794 | C→T | 6.2% | L36L (CTG→TTG) | sdhB → | succinate dehydrogenase, FeS subunit |
| RA | 897,409 | C→T | 8.3% | P109L (CCG→CTG) | potI → | putrescine ABC transporter permease |
| RA | 909,587 | G→A | 7.4% | A488V (GCC→GTC) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| RA | 947,763 | C→A | 5.6% | P179T (CCT→ACT) | ycaM → | putative transporter |
| RA | 1,029,397 | T→A | 6.7% | K191N (AAA→AAT) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
| RA | 1,029,516 | A→T | 7.2% | S152T (TCG→ACG) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
| RA | 1,104,249 | A→T | 5.1% | N100I (AAC→ATC) | csgB → | curlin nucleator protein, minor subunit in curli complex |
| RA | 1,179,425 | G→A | 6.5% | R278H (CGT→CAT) | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,204,241 | A→G | 6.9% | pseudogene (72/234 nt) | oweE → | pseudogene, lambda replication protein O homolog; CPS‑53/KpLE1 prophage;Phage or Prophage Related |
| RA | 1,303,096 | C→G | 6.8% | Y66* (TAC→TAG) | oppB → | oligopeptide ABC transporter permease |
| RA | 1,315,594 | A→T | 5.6% | D59E (GAT→GAA) | yciF ← | putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,351,222 | T→G | 7.2% | intergenic (‑183/+185) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| RA | 1,408,825 | T→C | 5.5% | M259T (ATG→ACG) | ydaN → | putative Zn(II) transporter |
| RA | 1,450,499 | C→G | 9.3% | G284A (GGC→GCC) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,458,164 | A→G | 6.1% | Q223R (CAG→CGG) | paaF → | 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,466,336 | C→G | 7.5% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,550,740 | C→A | 5.6% | L94M (CTG→ATG) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
| RA | 1,570,610 | G→A | 9.3% | intergenic (‑121/+35) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,611 | G→A | 10.7% | intergenic (‑122/+34) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,612 | T→C | 9.5% | intergenic (‑123/+33) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,570,613 | T→C | 9.4% | intergenic (‑124/+32) | gadC ← / ← gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| RA | 1,634,651 | C→T | 8.2% | V79M (GTG→ATG) | tfaQ ← | Qin prophage; putative tail fibre assembly protein |
| RA | 1,661,263 | Δ1 bp | 7.3% | coding (708/2424 nt) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,703,251 | A→T | 9.7% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 8.5% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,708,930 | C→A | 20.7% | P671Q (CCG→CAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,716,846 | T→A | 5.5% | N126I (AAC→ATC) | tyrS ← | tyrosyl‑tRNA synthetase |
| RA | 1,739,891 | G→A | 5.6% | intergenic (‑93/‑20) | ydhB ← / → ydhC | LysR family putative transcriptional regulator/putative arabinose efflux transporter |
| RA | 1,753,945 | T→C | 6.0% | K178R (AAA→AGA) | ydhY ← | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| RA | 1,770,800 | T→C | 5.0% | L62L (CTT→CTC) | ydiL → | putative HTH domain DNA‑binding protein |
| RA | 1,792,852 | C→T | 5.2% | R236H (CGT→CAT) | btuD ← | vitamin B12 ABC transporter ATPase |
| RA | 1,849,913 | T→C | 7.7% | A359A (GCT→GCC) | sppA → | protease IV (signal peptide peptidase) |
| RA | 1,854,790 | A→T | 6.0% | V22D (GTC→GAC) | ydjF ← | putative DNA‑binding transcriptional regulator |
| RA | 1,895,825 | G→A | 6.2% | V341I (GTC→ATC) | pabB → | aminodeoxychorismate synthase, subunit I |
| RA | 1,909,732 | T→A | 6.4% | K123I (AAA→ATA) | kdgR ← | KDG regulon transcriptional repressor |
| RA | 1,924,805 | A→G | 5.6% | G55G (GGT→GGC) | yobA ← | CopC family protein |
| RA | 1,933,569 | G→A | 5.9% | H346Y (CAC→TAC) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,952,594 | C→T | 6.0% | A110V (GCG→GTG) | yecN → | MAPEG family inner membrane protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,987,857 | C→T | 6.6% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 7.1% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 6.5% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 6.4% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 2,017,124 | C→T | 5.3% | L191L (CTG→TTG) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,017,566 | C→T | 6.9% | P338L (CCG→CTG) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,099,257 | A→T | 6.0% | V119V (GTT→GTA) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,129,512 | T→C | 5.1% | T47A (ACC→GCC) | wcaE ← | putative glycosyl transferase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,242,569 | A→T | 8.8% | N133K (AAT→AAA) ‡ | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,242,571 | T→A | 8.9% | N133Y (AAT→TAT) ‡ | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,242,573 | A→T | 10.5% | F132Y (TTT→TAT) | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,260,118 | C→T | 5.2% | A431A (GCG→GCA) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,293,433 | T→C | 5.6% | H491R (CAC→CGC) | ccmF ← | heme lyase, CcmF subunit |
| RA | 2,325,595 | T→A | 6.0% | I280I (ATT→ATA) | atoE → | short chain fatty acid transporter |
| RA | 2,341,429 | C→A | 7.0% | R914L (CGA→CTA) | yfaL ← | adhesin |
| RA | 2,357,836 | G→A | 9.3% | pseudogene (33/198 nt) | ypaA → | pseudogene, C‑terminal fragment, Transposase_31 family |
| RA | 2,483,912 | T→A | 6.0% | V53D (GTC→GAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,604,744 | G→A | 5.2% | G300S (GGC→AGC) | hyfC → | hydrogenase 4, membrane subunit |
| RA | 2,605,059 | T→C | 5.2% | F83F (TTT→TTC) | hyfD → | hydrogenase 4, membrane subunit |
| RA | 2,708,128 | C→T | 5.2% | L209L (TTG→TTA) | rseB ← | anti‑sigma E factor, binds RseA |
| RA | 3,180,497 | Δ1 bp | 6.3% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 6.3% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 6.5% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,226,632 | G→A | 5.8% | V133V (GTG→GTA) | ygjI → | putative transporter |
| RA | 3,281,524 | C→T | 5.0% | pseudogene (454/555 nt) | agaA → | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase |
| RA | 3,339,660 | C→A | 5.0% | G136* (GGA→TGA) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,376,265 | G→C | 5.2% | intergenic (+29/+14) | dcuD → / ← sspB | putative transporter/ClpXP protease specificity enhancing factor |
| RA | 3,548,571 | G→T | 15.2% | T500T (ACC→ACA) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,562,183 | G→T | 5.1% | E57D (GAG→GAT) | glpD → | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,566,786 | G→A | 6.0% | G416G (GGC→GGT) | glgA ← | glycogen synthase |
| RA | 3,906,828 | A→T | 5.0% | intergenic (‑261/+25) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 4,149,184 | G→A | 5.4% | A361V (GCG→GTG) | eptC ← | LPS heptose I phosphoethanolamine transferase |
| RA | 4,155,565 | G→A | 5.1% | A189T (GCA→ACA) | argC → | N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
| RA | 4,182,820 | C→T | 27.4% | H526Y (CAC→TAC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,184,810 | G→T | 14.7% | G1189V (GGT→GTT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,204,203 | G→A | 5.2% | R295H (CGC→CAC) | zraR → | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
| RA | 4,272,156 | G→A | 5.6% | V572V (GTC→GTT) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| RA | 4,296,060 | C→T | 47.3% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,306,090 | G→T | 11.7% | Q170K (CAA→AAA) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,367,700 | G→T | 5.2% | L210M (CTG→ATG) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,517,558 | C→A | 5.6% | E54* (GAA→TAA) | fecR ← | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| RA | 4,543,600 | A→G | 6.4% | A162A (GCA→GCG) | fimA → | major type 1 subunit fimbrin (pilin) |
| JC JC | 4,543,608 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | 100% | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| RA | 4,618,376 | G→C | 5.3% | D50H (GAT→CAT) | deoA → | thymidine phosphorylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 761483 | 762758 | 1276 | 33 [30] | [30] 31 | [sucA]–sucB | [sucA],sucB |
| * | * | ÷ | NC_000913 | 3423776–3424234 | 3424565–3424238 | 5–790 | 31 [30] | [29] 31 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 191719 | 85 (0.980) | 6 (0.070) | 6/250 | NT | 6.8% | intergenic (+11/‑136) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| ? | NC_000913 | = 191739 | 83 (1.010) | intergenic (+31/‑116) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.060) | 4/246 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 284263 | 52 (0.600) | 3 (0.040) | 3/252 | NT | 5.1% | coding (1063/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein |
| ? | NC_000913 | = 284300 | 61 (0.740) | coding (1100/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 3 (0.040) | 3/252 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 447264 = | 73 (0.840) | 5 (0.060) | 4/252 | NT | 6.5% | coding (442/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | NC_000913 | 447282 = | 75 (0.900) | coding (424/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
| * | ? | NC_000913 | = 471220 | 54 (0.620) | 3 (0.040) | 3/250 | NT | 5.1% | coding (585/1782 nt) | mdlB | putative multidrug ABC transporter ATPase |
| ? | NC_000913 | = 471245 | 61 (0.740) | coding (610/1782 nt) | mdlB | putative multidrug ABC transporter ATPase | |||||
| * | ? | NC_000913 | 523870 = | 56 (0.640) | 3 (0.040) | 3/254 | NT | 5.1% | coding (610/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 523901 = | 58 (0.690) | coding (641/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 731787 = | 76 (0.870) | 4 (0.050) | 4/252 | NT | 5.4% | coding (2205/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 731804 = | 67 (0.810) | coding (2222/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 911155 | NA (NA) | 3 (0.040) | 3/246 | NT | NA | noncoding (9/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 911163 | NA (NA) | noncoding (17/26 nt) | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1117866 = | NA (NA) | 3 (0.040) | 3/244 | NT | NA | intergenic (+7/+35) | yceA/yceI | putative rhodanese‑related sulfurtransferase/periplasmic high pH‑inducible lipid‑binding protein |
| ? | NC_000913 | 1117891 = | NA (NA) | intergenic (+32/+10) | yceA/yceI | putative rhodanese‑related sulfurtransferase/periplasmic high pH‑inducible lipid‑binding protein | |||||
| * | ? | NC_000913 | 1207790 = | 21 (0.240) | 37 (0.480) | 35/232 | NT | 60.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 29 (0.380) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 23 (0.260) | 43 (0.560) | 35/232 | NT | 63.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 29 (0.380) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 100 (1.190) | 79/256 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1390464 | 39 (0.450) | 4 (0.050) | 4/250 | NT | 8.1% | coding (135/729 nt) | mpaA | murein peptide amidase A |
| ? | NC_000913 | = 1390483 | 54 (0.660) | coding (116/729 nt) | mpaA | murein peptide amidase A | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 3 (0.040) | 3/252 | NT | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1859585 | 78 (0.900) | 4 (0.050) | 3/250 | NT | 5.0% | coding (645/1380 nt) | ydjK | putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | = 1859618 | 77 (0.940) | coding (612/1380 nt) | ydjK | putative MFS sugar transporter, membrane protein | |||||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 70 (0.810) | 61/264 | NT | 35.0% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3902213 | 130 (1.500) | coding (8/1617 nt) | bglH | carbohydrate‑specific outer membrane porin, cryptic | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 59 (0.680) | 50/264 | NT | 28.0% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 3658153 = | 152 (1.750) | intergenic (‑99/‑213) | arrS/gadE | antisense sRNA ArrS, function unknown/gad regulon transcriptional activator | |||||
| * | ? | NC_000913 | 2125439 = | 52 (0.600) | 3 (0.040) | 3/260 | NT | 5.3% | coding (308/1224 nt) | wcaI | putative glycosyl transferase |
| ? | NC_000913 | 2125444 = | 55 (0.640) | coding (303/1224 nt) | wcaI | putative glycosyl transferase | |||||
| * | ? | NC_000913 | 2405627 = | 68 (0.780) | 4 (0.050) | 4/242 | NT | 6.4% | intergenic (‑555/+76) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | NC_000913 | 2405659 = | 55 (0.690) | intergenic (‑587/+44) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | NC_000913 | = 2419565 | 59 (0.680) | 5 (0.060) | 5/250 | NT | 7.9% | coding (224/555 nt) | yfcE | phosphodiesterase activity on bis‑pNPP |
| ? | NC_000913 | = 2419579 | 61 (0.740) | coding (210/555 nt) | yfcE | phosphodiesterase activity on bis‑pNPP | |||||
| * | ? | NC_000913 | 2519211 = | 80 (0.920) | 4 (0.050) | 4/242 | NT | 5.3% | intergenic (+6/+46) | yfeD/gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| ? | NC_000913 | 2519240 = | 69 (0.870) | intergenic (+35/+17) | yfeD/gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | 2525897 = | 53 (0.610) | 4 (0.050) | 4/244 | NT | 8.1% | intergenic (+6/+33) | yfeN/yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| ? | NC_000913 | 2525920 = | 42 (0.520) | intergenic (+29/+10) | yfeN/yfeR | putative outer membrane protein/transcriptional regulator of yefH | |||||
| * | ? | NC_000913 | = 2947467 | 27 (0.310) | 4 (0.070) +40 bp |
3/184 | NT | 10.2% | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| ? | NC_000913 | = 2947757 | 74 (0.850) | coding (1254/1254 nt) | amiC | N‑acetylmuramoyl‑L‑alanine amidase | |||||
| * | ? | NC_000913 | = 3045123 | NA (NA) | 3 (0.040) | 3/242 | NT | NA | noncoding (11/28 nt) | REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3045129 | NA (NA) | noncoding (17/28 nt) | REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3217490 | NA (NA) | 4 (0.050) | 4/250 | NT | NA | noncoding (57/89 nt) | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3217522 | NA (NA) | noncoding (89/89 nt) | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3220891 | NA (NA) | 3 (0.040) | 3/240 | NT | NA | noncoding (12/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3220898 | NA (NA) | noncoding (19/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 3620116 | NA (NA) | 3 (0.040) | 3/252 | NT | 100% | coding (925/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620152 | 0 (0.000) | coding (961/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620350 | NA (NA) | 3 (0.040) | 3/252 | NT | 100% | coding (1159/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620425 | 0 (0.000) | coding (1234/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 4094533 | 84 (0.970) | 5 (0.060) | 5/250 | NT | 5.9% | noncoding (218/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | = 4094687 | NA (NA) | noncoding (372/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | = 4128030 | NA (NA) | 4 (0.050) | 4/250 | NT | NA | noncoding (79/97 nt) | RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4128041 | NA (NA) | noncoding (90/97 nt) | RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4157437 | 79 (0.910) | 4 (0.050) | 4/254 | NT | 5.1% | coding (588/1374 nt) | argH | argininosuccinate lyase |
| ? | NC_000913 | = 4157458 | 73 (0.870) | coding (609/1374 nt) | argH | argininosuccinate lyase | |||||
| * | ? | NC_000913 | = 4488423 | 105 (1.210) | 7 (0.090) | 7/240 | NT | 6.8% | intergenic (+23/+138) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| ? | NC_000913 | = 4488427 | 98 (1.240) | intergenic (+27/+134) | lptG/yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold | |||||
| * | ? | NC_000913 | 4542682 = | 97 (1.120) | 22 (0.270) | 20/246 | NT | 20.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 81 (1.000) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 93 (1.070) | 16 (0.200) | 14/246 | NT | 16.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 81 (1.000) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||