mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 71,772 | T→A | 6.8% | I141N (ATT→AAT) | yabI → | DedA family inner membrane protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 262,978 | A→T | 6.1% | intergenic (+32/+172) | thrW → / ← ykfN | tRNA‑Thr/pseudogene, YdiA family |
| RA | 308,001 | Δ1 bp | 7.5% | coding (1332/2526 nt) | ecpC ← | ECP production outer membrane protein |
| RA | 361,672 | C→G | 5.1% | W63C (TGG→TGC) | lacA ← | thiogalactoside acetyltransferase |
| JC JC | 458,790 | IS186 (–) +6 bp :: Δ1 bp | 51.6% | intergenic (+90/‑93) | clpX → / → lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| JC JC | 458,790 | IS186 (+) +6 bp :: Δ1 bp | 39.2% | intergenic (+90/‑93) | clpX → / → lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| JC JC | 564,107 | IS2 (+) +5 bp | 100% | coding (370‑374/633 nt) | sfmZ ← | response regulator family protein |
| RA | 566,396 | T→A | 92.4% | pseudogene (21/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,414 | A→G | 94.6% | pseudogene (39/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,435 | G→A | 100% | pseudogene (60/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,444 | T→C | 100% | pseudogene (69/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,451 | T→C | 100% | pseudogene (76/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,463 | T→C | 100% | pseudogene (88/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,468 | C→T | 100% | pseudogene (93/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,492 | 2 bp→TA | 100% | pseudogene (117‑118/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,498 | C→T | 100% | pseudogene (123/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,510 | G→C | 100% | pseudogene (135/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,513 | C→T | 100% | pseudogene (138/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,519 | T→C | 100% | pseudogene (144/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,522 | C→A | 100% | pseudogene (147/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,528 | A→G | 100% | pseudogene (153/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,531 | 3 bp→TGT | 100% | pseudogene (156‑158/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,535 | 2 bp→CA | 100% | pseudogene (160‑161/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,543 | A→T | 100% | pseudogene (168/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,547 | C→A | 100% | pseudogene (172/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,565 | A→G | 100% | pseudogene (190/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,570 | A→C | 100% | pseudogene (195/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,597 | T→C | 100% | pseudogene (222/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,651 | T→C | 100% | pseudogene (276/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 566,728 | G→T | 100% | pseudogene (45/93 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 566,740 | A→G | 100% | pseudogene (57/93 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 566,742 | A→C | 100% | pseudogene (59/93 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 566,756 | G→C | 100% | pseudogene (73/93 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 566,770 | C→A | 100% | pseudogene (87/93 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,052 | T→C | 100% | pseudogene (18/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,067 | G→A | 94.3% | pseudogene (33/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,076 | A→T | 91.9% | pseudogene (42/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,077 | A→C | 91.9% | pseudogene (43/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,079 | C→T | 91.2% | pseudogene (45/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,085 | C→T | 88.3% | pseudogene (51/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,086 | G→A | 88.5% | pseudogene (52/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,088 | T→C | 88.6% | pseudogene (54/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,091 | T→A | 88.5% | pseudogene (57/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,124 | C→T | 76.2% | pseudogene (90/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,133 | A→G | 71.7% | pseudogene (99/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,140 | T→C | 70.4% | pseudogene (106/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,152 | G→A | 47.4% | pseudogene (118/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 568,163 | T→C | 31.0% | pseudogene (129/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 578,118 | A→C | 37.8% | V4V (GTA→GTC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,130 | A→C | 40.2% | I8I (ATA→ATC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,140 | A→G | 38.5% | I12V (ATT→GTT) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,158 | A→T | 44.8% | S18C (AGC→TGC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,172 | G→T | 42.2% | A22A (GCG→GCT) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,175 | C→T | 42.2% | V23V (GTC→GTT) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,196 | A→C | 39.4% | A30A (GCA→GCC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,199 | C→T | 42.1% | I31I (ATC→ATT) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,200 | G→A | 42.6% | A32T (GCC→ACC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,210 | T→C | 91.4% | V35A (GTC→GCC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,244 | A→G | 91.8% | L46L (CTA→CTG) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 578,331 | G→T | 100% | A75A (GCG→GCT) R2L (CGA→CTA) |
rzpD → rzoD → |
DLP12 prophage; putative murein endopeptidase DLP12 prophage; putative lipoprotein |
| RA | 578,427 | G→C | 100% | T107T (ACG→ACC) R34P (CGG→CCG) |
rzpD → rzoD → |
DLP12 prophage; putative murein endopeptidase DLP12 prophage; putative lipoprotein |
| RA | 578,809 | T→C | 100% | T29A (ACA→GCA) | borD ← | DLP12 prophage; putative lipoprotein |
| RA | 578,811 | T→G | 100% | Q28P (CAG→CCG) | borD ← | DLP12 prophage; putative lipoprotein |
| RA | 578,831 | T→C | 100% | T21T (ACA→ACG) | borD ← | DLP12 prophage; putative lipoprotein |
| RA | 579,004 | C→T | 100% | intergenic (‑111/+180) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,095 | Δ1 bp | 100% | intergenic (‑202/+89) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,127 | T→C | 100% | intergenic (‑234/+57) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,134 | T→C | 100% | intergenic (‑241/+50) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,146 | A→G | 100% | intergenic (‑253/+38) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 579,271 | G→A | 100% | H108H (CAC→CAT) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,285 | T→C | 100% | I104V (ATT→GTT) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,385 | A→G | 100% | N70N (AAT→AAC) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,457 | A→G | 100% | I46I (ATT→ATC) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,502 | A→G | 100% | N31N (AAT→AAC) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,540 | T→C | 100% | N19D (AAC→GAC) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 579,651 | C→T | 100% | intergenic (‑57/‑229) | ybcV ← / → ybcW | DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein |
| RA | 579,671 | T→C | 100% | intergenic (‑77/‑209) | ybcV ← / → ybcW | DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein |
| RA | 579,717 | A→C | 100% | intergenic (‑123/‑163) | ybcV ← / → ybcW | DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein |
| RA | 579,811 | C→T | 100% | intergenic (‑217/‑69) | ybcV ← / → ybcW | DLP12 prophage; uncharacterized protein/DLP12 prophage; uncharacterized protein |
| RA | 580,020 | G→A | 100% | R47R (AGG→AGA) | ybcW → | DLP12 prophage; uncharacterized protein |
| RA | 580,115 | C→T | 100% | intergenic (+29/+136) | ybcW → / ← ylcI | DLP12 prophage; uncharacterized protein/DUF3950 family protein, DLP12 prophage |
| RA | 580,119 | 2 bp→GT | 100% | intergenic (+33/+131) | ybcW → / ← ylcI | DLP12 prophage; uncharacterized protein/DUF3950 family protein, DLP12 prophage |
| RA | 580,302 | C→T | 100% | R48R (AGG→AGA) | ylcI ← | DUF3950 family protein, DLP12 prophage |
| RA | 580,437 | A→C | 72.5% | T3T (ACT→ACG) | ylcI ← | DUF3950 family protein, DLP12 prophage |
| RA | 580,697 | T→C | 94.4% | intergenic (‑252/‑137) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 580,717 | G→A | 100% | intergenic (‑272/‑117) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 580,729 | A→T | 100% | intergenic (‑284/‑105) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 580,746 | C→T | 100% | intergenic (‑301/‑88) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 580,830 | 2 bp→AA | 100% | intergenic (‑385/‑3) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 581,042 | T→G | 100% | L70R (CTG→CGG) | nohD → | DLP12 prophage; DNA packaging protein |
| RA | 581,056 | A→G | 100% | T75A (ACA→GCA) | nohD → | DLP12 prophage; DNA packaging protein |
| RA | 581,073 | G→A | 100% | G80G (GGG→GGA) | nohD → | DLP12 prophage; DNA packaging protein |
| RA | 581,133 | A→G | 43.9% | K100K (AAA→AAG) | nohD → | DLP12 prophage; DNA packaging protein |
| RA | 581,227 | A→C | 100% | I132L (ATC→CTC) | nohD → | DLP12 prophage; DNA packaging protein |
| RA | 613,699 | A→T | 8.3% | L321F (TTA→TTT) | fes → | enterobactin/ferrienterobactin esterase |
| RA | 637,583 | T→A | 5.9% | L12F (TTA→TTT) | ybdO ← | putative DNA‑binding transcriptional regulator |
| RA | 657,533 | A→T | 5.5% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 675,700 | G→C | 7.4% | A283G (GCC→GGC) | ybeQ ← | Sel1 family TPR‑like repeat protein |
| RA | 755,646 | C→A | 38.2% | Y29* (TAC→TAA) | sdhD → | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| JC | 756,291 | Δ11 bp | 36.9% | coding (385‑395/1767 nt) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 778,021 | G→C | 7.7% | L94L (CTG→CTC) | tolB → | periplasmic protein |
| RA | 816,956 | C→A | 100% | intergenic (‑309/‑88) | ybhK ← / → moaA | putative CofD superfamily transferase/molybdopterin biosynthesis protein A |
| RA | 838,901 | T→G | 5.1% | S103R (AGC→CGC) | ybiX ← | Fe(II)‑dependent oxygenase superfamily protein |
| RA | 838,902 | G→C | 5.1% | R102R (CGC→CGG) | ybiX ← | Fe(II)‑dependent oxygenase superfamily protein |
| RA | 838,908 | T→G | 5.4% | A100A (GCA→GCC) ‡ | ybiX ← | Fe(II)‑dependent oxygenase superfamily protein |
| RA | 838,909 | G→C | 5.7% | A100G (GCA→GGA) ‡ | ybiX ← | Fe(II)‑dependent oxygenase superfamily protein |
| RA | 838,910 | C→A | 5.7% | A100S (GCA→TCA) ‡ | ybiX ← | Fe(II)‑dependent oxygenase superfamily protein |
| RA | 1,334,440 | A→T | 7.0% | T196S (ACA→TCA) | cysB → | N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor |
| RA | 1,423,225 | G→A | 91.8% | pseudogene (25/444 nt) | rzpR → | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS |
| RA | 1,423,244 | G→C | 100% | pseudogene (44/444 nt) | rzpR → | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS |
| RA | 1,423,272 | 2 bp→TA | 100% | pseudogene (72‑73/444 nt) | rzpR → | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS |
| RA | 1,423,283 | 2 bp→CC | 100% | pseudogene (83‑84/444 nt) | rzpR → | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS |
| RA | 1,423,338 | G→C | 94.8% | pseudogene (138/444 nt) | rzpR → | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS |
| RA | 1,423,404 | G→T | 100% | pseudogene (204/444 nt) R2L (CGA→CTA) |
rzpR → rzoR → |
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS Rac prophage; putative lipoprotein |
| RA | 1,428,925 | C→T | 89.3% | pseudogene (130/189 nt) | lomR → | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion |
| RA | 1,428,945 | C→T | 92.6% | pseudogene (150/189 nt) | lomR → | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion |
| RA | 1,428,954 | T→A | 94.0% | pseudogene (159/189 nt) | lomR → | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion |
| RA | 1,428,963 | G→T | 100% | pseudogene (168/189 nt) | lomR → | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion |
| RA | 1,428,966 | T→G | 100% | pseudogene (171/189 nt) | lomR → | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion |
| RA | 1,428,978 | G→A | 100% | pseudogene (183/189 nt) | lomR → | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion |
| RA | 1,429,021 | 2 bp→AA | 100% | intergenic (+37/‑27) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,024 | A→C | 100% | intergenic (+40/‑25) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,027 | C→T | 100% | intergenic (+43/‑22) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,069 | T→A | 100% | G7G (GGT→GGA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,072 | A→C | 100% | V8V (GTA→GTC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,111 | A→C | 100% | T21T (ACA→ACC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,114 | C→T | 100% | I22I (ATC→ATT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,126 | A→C | 100% | A26A (GCA→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,128 | A→G | 100% | K27R (AAA→AGA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,160 | C→G | 100% | L38V (CTG→GTG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,164 | C→G | 100% | A39G (GCC→GGC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,171 | A→G | 100% | E41E (GAA→GAG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,204 | C→T | 100% | D52D (GAC→GAT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,207 | T→G | 100% | V53V (GTT→GTG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,225 | C→T | 100% | S59S (AGC→AGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,228 | T→C | 100% | V60V (GTT→GTC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,231 | T→C | 100% | I61I (ATT→ATC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,235 | 2 bp→CA | 100% | coding (187‑188/3363 nt) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,240 | G→T | 100% | V64V (GTG→GTT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,243 | A→C | 100% | E65D (GAA→GAC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,246 | A→T | 100% | G66G (GGA→GGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,249 | C→T | 100% | F67F (TTC→TTT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,252 | G→A | 100% | P68P (CCG→CCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,255 | G→A | 100% | P69P (CCG→CCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,258 | A→G | 100% | S70S (TCA→TCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,261 | T→C | 100% | H71H (CAT→CAC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,273 | T→C | 100% | I75I (ATT→ATC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,291 | T→A | 100% | S81S (TCT→TCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,297 | C→G | 100% | P83P (CCC→CCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,300 | T→G | 100% | G84G (GGT→GGG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,319 | G→T | 100% | G91C (GGT→TGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,345 | T→G | 100% | R99R (CGT→CGG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,353 | 2 bp→TG | 100% | coding (305‑306/3363 nt) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,360 | C→T | 100% | R104R (CGC→CGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,364 | T→C | 100% | F106L (TTT→CTT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,404 | C→T | 100% | A119V (GCG→GTG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,416 | 2 bp→GT | 100% | coding (368‑369/3363 nt) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,425 | C→A | 94.1% | A126D (GCC→GAC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,435 | G→A | 94.2% | K129K (AAG→AAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,442 | A→G | 93.3% | S132G (AGT→GGT) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,444 | T→C | 93.7% | S132S (AGT→AGC) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,453 | C→T | 91.8% | S135S (AGC→AGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,454 | A→G | 91.1% | T136A (ACA→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,462 | C→T | 89.3% | A138A (GCC→GCT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,463 | C→G | 89.3% | R139G (CGT→GGT) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,464 | G→C | 89.1% | R139P (CGT→CCT) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,466 | G→C | 88.8% | E140Q (GAG→CAG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,470 | C→T | 89.5% | A141V (GCG→GTG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,471 | G→C | 89.9% | A141A (GCG→GCC) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,474 | A→G | 89.1% | A142A (GCA→GCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,475 | A→G | 88.8% | T143A (ACC→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,479 | A→T | 89.0% | H144L (CAT→CTT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,482 | C→T | 88.4% | A145V (GCG→GTG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,484 | G→A | 88.6% | A146T (GCT→ACT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,492 | T→A | 88.8% | A148A (GCT→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,493 | G→A | 88.9% | A149T (GCG→ACG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,495 | G→T | 88.7% | A149A (GCG→GCT) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,510 | A→C | 83.8% | A154A (GCA→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,522 | A→C | 86.4% | S158S (TCA→TCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,534 | C→T | 89.3% | A162A (GCC→GCT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,537 | G→A | 89.7% | A163A (GCG→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,543 | G→A | 89.5% | S165S (TCG→TCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,550 | T→G | 93.3% | S168A (TCA→GCA) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,551 | C→A | 93.3% | S168* (TCA→TAA) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,558 | T→C | 94.2% | S170S (TCT→TCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,562 | A→G | 94.8% | S172G (AGC→GGC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,569 | G→A | 100% | G174E (GGA→GAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,571 | A→G | 100% | T175A (ACG→GCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,580 | A→G | 100% | T178A (ACA→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,597 | 3 bp→GGA | 100% | coding (549‑551/3363 nt) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,609 | T→C | 100% | A187A (GCT→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,612 | C→A | 100% | A188A (GCC→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,615 | T→C | 100% | A189A (GCT→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,632 | G→A | 100% | S195N (AGC→AAC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,682 | T→G | 100% | S212A (TCA→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,692 | T→A | 100% | L215Q (CTA→CAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,702 | A→C | 100% | A218A (GCA→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,708 | A→G | 100% | T220T (ACA→ACG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,714 | A→C | 100% | A222A (GCA→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,724 | A→G | 100% | T226A (ACC→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,732 | G→A | 100% | K228K (AAG→AAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,735 | A→G | 100% | A229A (GCA→GCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,741 | A→G | 100% | E231E (GAA→GAG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,744 | T→C | 100% | A232A (GCT→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,747 | G→C | 100% | A233A (GCG→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,750 | C→T | 100% | T234T (ACC→ACT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,753 | G→A | 100% | S235S (TCG→TCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,756 | C→A | 100% | A236A (GCC→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,759 | G→A | 100% | R237R (CGG→CGA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,767 | C→T | 100% | A240V (GCG→GTG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,780 | A→G | 100% | E244E (GAA→GAG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,783 | G→A | 100% | A245A (GCG→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,816 | C→T | 100% | S256S (AGC→AGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,820 | A→G | 100% | S258G (AGT→GGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,823 | A→C | 100% | S259R (AGT→CGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,851 | G→A | 100% | G268E (GGA→GAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,858 | C→T | 100% | S270S (TCC→TCT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,861 | G→C | 100% | A271A (GCG→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,863 | A→G | 100% | K272R (AAG→AGG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,888 | C→T | 100% | N280N (AAC→AAT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,897 | T→A | 100% | S283S (TCT→TCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,906 | G→A | 100% | T286T (ACG→ACA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,914 | G→A | 100% | G289E (GGA→GAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,917 | A→G | 100% | Q290R (CAG→CGG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,927 | G→T | 94.5% | S293S (TCG→TCT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,930 | T→C | 94.3% | A294A (GCT→GCC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,938 | G→A | 93.0% | G297D (GGC→GAC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,429,940 | T→G | 93.3% | S298A (TCA→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,314 | T→G | 77.9% | A422A (GCT→GCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,317 | C→A | 78.8% | G423G (GGC→GGA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,324 | A→G | 79.1% | T426A (ACG→GCG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,325 | C→T | 79.2% | T426M (ACG→ATG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,326 | G→A | 78.9% | T426T (ACG→ACA) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,327 | G→T | 79.1% | A427S (GCG→TCG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,329 | G→A | 79.5% | A427A (GCG→GCA) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,333 | G→T | 79.7% | A429S (GCT→TCT) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,335 | T→G | 79.8% | A429A (GCT→GCG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,348 | A→G | 78.5% | T434A (ACG→GCG) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,353 | G→A | 79.5% | A435A (GCG→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,357 | T→G | 78.9% | S437A (TCC→GCC) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,359 | C→G | 79.6% | S437S (TCC→TCG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,367 | C→T | 79.7% | T440M (ACG→ATG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,368 | G→A | 79.2% | T440T (ACG→ACA) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,371 | C→T | 79.3% | R441R (CGC→CGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,374 | C→A | 78.7% | A442A (GCC→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,377 | G→A | 79.0% | E443E (GAG→GAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,379 | C→A | 79.7% | T444K (ACA→AAA) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,380 | A→T | 79.1% | T444T (ACA→ACT) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,381 | G→T | 79.8% | A445S (GCA→TCA) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,383 | A→G | 79.7% | A445A (GCA→GCG) ‡ | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,386 | T→A | 79.1% | A446A (GCT→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,392 | G→T | 79.4% | R448R (CGG→CGT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,398 | G→A | 82.2% | E450E (GAG→GAA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,404 | T→A | 84.3% | I452I (ATT→ATA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,407 | A→T | 83.5% | A453A (GCA→GCT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,410 | C→A | 83.2% | S454S (TCC→TCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,413 | C→T | 83.1% | A455A (GCC→GCT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,430,416 | G→C | 81.8% | V456V (GTG→GTC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,497,184 | T→A | 6.7% | M110K (ATG→AAG) | opgD → | OPG biosynthetic periplasmic protein |
| RA | 1,521,054 | A→T | 6.2% | V671D (GTC→GAC) | yncD ← | putative iron outer membrane transporter |
| RA | 1,552,263 | G→T | 10.8% | intergenic (+272/+135) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,264 | A→C | 10.9% | intergenic (+273/+134) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,270 | T→G | 11.0% | intergenic (+279/+128) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,271 | T→C | 10.6% | intergenic (+280/+127) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,596,873 | T→A | 6.8% | pseudogene (1115/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,635,974 | T→G | 100% | pseudogene (394/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,636,068 | T→C | 100% | pseudogene (300/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,636,074 | C→T | 100% | pseudogene (294/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,636,128 | C→T | 100% | pseudogene (240/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,636,145 | T→C | 100% | pseudogene (223/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,636,173 | T→C | 100% | pseudogene (195/528 nt) | nohQ ← | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin |
| RA | 1,636,382 | C→A | 100% | intergenic (‑15/‑374) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| RA | 1,636,413 | C→A | 43.0% | intergenic (‑46/‑343) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| RA | 1,636,423 | T→C | 48.4% | intergenic (‑56/‑333) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| RA | 1,636,455 | G→A | 90.4% | intergenic (‑88/‑301) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| RA | 1,636,484 | C→T | 93.0% | intergenic (‑117/‑272) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| RA | 1,636,503 | T→C | 93.9% | intergenic (‑136/‑253) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| RA | 1,636,893 | C→T | 75.1% | R46R (CGC→CGT) | ynfO → | uncharacterized protein, Qin prophage |
| RA | 1,722,869 | G→C | 7.4% | R250P (CGT→CCT) | ydhK → | putative efflux protein (PET) component of YdhJK efflux pump |
| RA | 1,769,928 | C→G | 15.4% | S285R (AGC→AGG) | ydiK → | UPF0118 family inner membrane protein |
| RA | 1,953,914 | T→A | 16.6% | L158Q (CTG→CAG) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,071,345 | T→A | 5.7% | noncoding (29/195 nt) | isrC → | novel sRNA, CP4‑44; putative prophage remnant |
| RA | 2,090,124 | C→G | 9.4% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,147,822 | T→A | 7.2% | L50Q (CTG→CAG) | yegD → | Hsp70 chaperone family protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,204,773 | G→T | 9.3% | V60L (GTG→TTG) | yehL → | putative hexameric AAA+ MoxR family ATPase |
| RA | 2,252,804 | C→A | 11.8% | intergenic (+16/+91) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,810 | T→G | 14.3% | intergenic (+22/+85) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,812 | A→T | 14.3% | intergenic (+24/+83) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,814 | C→A | 14.3% | intergenic (+26/+81) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,820 | T→G | 16.2% | intergenic (+32/+75) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,821 | T→C | 13.7% | intergenic (+33/+74) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,484,260 | T→A | 7.0% | F169Y (TTC→TAC) | evgA → | response regulator in two‑component regulatory system with EvgS |
| RA | 2,987,103 | C→T | 7.9% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 7.9% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,105 | A→G | 7.5% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 3,020,510 | G→T | 10.2% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 10.5% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 10.5% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,037,956 | A→C | 9.2% | W51G (TGG→GGG) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,037,957 | G→T | 9.2% | P50P (CCC→CCA) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,058,627 | G→C | 5.9% | intergenic (‑217/+39) | serA ← / ← rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| RA | 3,114,610 | T→A | 7.8% | K1501N (AAA→AAT) | sslE ← | putative secreted and surface‑associated lipoprotein mucinase |
| RA | 3,377,768 | C→T | 10.4% | intergenic (‑348/+47) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,377,769 | G→T | 11.1% | intergenic (‑349/+46) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,377,770 | A→C | 10.4% | intergenic (‑350/+45) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,377,771 | A→G | 10.3% | intergenic (‑351/+44) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,439,588 | G→C | 6.7% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 6.4% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,815,809 | Δ1 bp | 5.8% | intergenic (‑41/+25) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,815,823 | C→G | 8.3% | intergenic (‑55/+11) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 4,015,333 | A→T | 6.0% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,034,283 | A→T | 5.2% | Y380F (TAT→TTT) | trkH → | potassium transporter |
| RA | 4,147,517 | A→G | 6.8% | Y267Y (TAT→TAC) | yijO ← | AraC family putative transcriptional activator |
| RA | 4,182,934 | C→A | 41.9% | P564T (CCT→ACT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,190,208 | T→A | 5.7% | R141R (CGT→CGA) | yjaZ → | stationary phase growth adaptation protein |
| RA | 4,195,757 | A→T | 6.3% | S115T (TCC→ACC) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,262,192 | C→G | 6.2% | S175C (TCC→TGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,039 | T→A | 5.7% | intergenic (+245/+397) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,060 | C→T | 36.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,325,948 | A→G | 11.5% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,457,300 | A→T | 6.9% | intergenic (+142/+14) | mpl → / ← yjgA | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 761506 | 762742 | 1237 | 16 [15] | [14] 22 | [sucA]–sucB | [sucA],sucB |
| * | * | ÷ | NC_000913 | 3423773–3424234 | 3424549–3424238 | 5–777 | 16 [15] | [15] 17 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 566774 | 37 (0.550) | 1257 (18.830) | 119/258 | NT | 97.0% | pseudogene (91/93 nt) | renD | pseudogene, DLP12 prophage;Phage or Prophage Related |
| ? | NC_000913 | 568036 = | 41 (0.610) | pseudogene (2/213 nt) | renD | pseudogene, DLP12 prophage;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 781222 | 58 (0.860) | 7 (0.110) +ATGT |
7/254 | NT | 11.1% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 781839 | NA (NA) | intergenic (+187/‑246) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | 815585 = | NA (NA) | 23 (0.360) | 17/248 | NT | NA | noncoding (1/97 nt) | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 815610 = | NA (NA) | noncoding (26/97 nt) | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1207790 = | 21 (0.310) | 41 (0.690) | 33/230 | NT | 71.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 14 (0.240) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 22 (0.320) | 41 (0.690) | 36/230 | NT | 71.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 14 (0.240) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 113 (1.720) | 81/254 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 2389438 | 54 (0.800) | 3 (0.050) | 3/244 | NT | 5.2% | coding (323/849 nt) | yfbP | TPR‑like repeats‑containing protein |
| ? | NC_000913 | = 2389487 | 59 (0.930) | coding (372/849 nt) | yfbP | TPR‑like repeats‑containing protein | |||||
| * | ? | NC_000913 | = 3158891 | 52 (0.770) | 3 (0.050) | 3/248 | NT | 6.0% | intergenic (+7/+36) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein |
| ? | NC_000913 | = 3158922 | 45 (0.700) | intergenic (+38/+5) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein | |||||
| * | ? | NC_000913 | 3534486 = | 50 (0.740) | 3 (0.050) | 3/240 | NT | 6.4% | intergenic (+46/+30) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | NC_000913 | 3534514 = | 42 (0.680) | intergenic (+74/+2) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | NC_000913 | 3672592 = | 57 (0.840) | 4 (0.060) | 4/250 | NT | 6.9% | coding (179/900 nt) | yhjC | LysR family putative transcriptional regulator |
| ? | NC_000913 | = 4031710 | 54 (0.830) | coding (550/1332 nt) | pepQ | proline dipeptidase | |||||
| * | ? | NC_000913 | = 4078964 | 84 (1.240) | 5 (0.080) | 4/246 | NT | 6.1% | intergenic (+526/‑333) | yiiD/yiiE | GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator |
| ? | NC_000913 | = 4078978 | 74 (1.160) | intergenic (+540/‑319) | yiiD/yiiE | GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator | |||||
| * | ? | NC_000913 | 4542682 = | 44 (0.650) | 17 (0.270) | 14/244 | NT | 25.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 60 (0.950) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 45 (0.660) | 22 (0.350) | 20/244 | NT | 30.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 60 (0.950) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||