breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		[crl]	[crl]
RA	1,662,350	C→T	P599S (CCC→TCC)	ynfF →	S‑ and N‑oxide reductase, A subunit, periplasmic
RA	1,806,340	C→T	intergenic (‑257/‑30)	ydiY ← / → pfkB	acid‑inducible putative outer membrane protein/6‑phosphofructokinase II
RA	1,806,700	G→A	A111T (GCG→ACG)	pfkB →	6‑phosphofructokinase II
RA	2,173,363	Δ2 bp	intergenic (‑1/+1)	gatC ← / ← gatC	pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA	3,560,455	+G	intergenic (‑2/+1)	glpR ← / ← glpR	pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
JC JC	3,560,930	IS5 (+) +4 bp	coding (520‑523/831 nt)	glpG ←	rhomboid intramembrane serine protease
RA	4,187,214	A→C	D622A (GAC→GCC)	rpoC →	RNA polymerase, beta prime subunit
RA	4,296,381	+GC	intergenic (+587/+55)	gltP → / ← yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423777–3424234	3424547–3424238	5–771	26 [24]	[25] 27	[rrfD]–[rrlD]	[rrfD],[rrlD]
*	*	÷	NC_000913	4107541	4108528	988	27 [22]	[24] 26	pfkA	pfkA
*	*	÷	NC_000913	4144035	4147090	3056	26 [25]	[23] 26	[pflD]–[pflC]	[pflD],[pflC]