mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 124,447 | G→A | 5.5% | P477P (CCG→CCA) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 128,803 | G→A | 5.9% | D298N (GAC→AAC) | lpd → | dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 287,437 | T→A | 5.2% | S217T (TCC→ACC) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
| RA | 399,993 | C→A | 11.0% | V311L (GTG→TTG) | ddlA ← | D‑alanine‑D‑alanine ligase A |
| RA | 420,941 | T→A | 5.2% | intergenic (+31/‑45) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,942 | G→T | 5.1% | intergenic (+32/‑44) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,945 | A→C | 5.9% | intergenic (+35/‑41) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,946 | T→A | 5.3% | intergenic (+36/‑40) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 460,110 | A→G | 6.1% | Q408R (CAG→CGG) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 514,229 | C→T | 5.7% | D79D (GAC→GAT) | cueR → | copper‑responsive regulon transcriptional regulator |
| RA | 725,523 | T→A | 6.0% | Q505L (CAG→CTG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 894,627 | A→G | 5.2% | M282V (ATG→GTG) | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 894,952 | T→A | 5.1% | intergenic (+56/‑39) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| RA | 911,690 | A→G | 6.0% | V154A (GTT→GCT) | hcr ← | HCP oxidoreductase, NADH‑dependent |
| RA | 1,019,626 | A→T | 5.6% | V143D (GTC→GAC) | ompA ← | outer membrane protein A (3a;II*;G;d) |
| RA | 1,032,082 | T→C | 5.5% | intergenic (‑370/‑57) | serT ← / → hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
| RA | 1,053,860 | Δ1 bp | 7.2% | coding (2319/2745 nt) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,065,890 | G→A | 7.1% | P102P (CCG→CCA) | agp → | glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,072,982 | C→T | 5.8% | E344K (GAA→AAA) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
| RA | 1,073,609 | G→T | 5.5% | L135I (CTC→ATC) | rutA ← | pyrimidine oxygenase, FMN‑dependent |
| RA | 1,137,952 | C→T | 5.5% | G194G (GGC→GGT) | flgJ → | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
| RA | 1,183,782 | C→T | 5.1% | A221A (GCG→GCA) | potB ← | spermidine/putrescine ABC transporter permease |
| RA | 1,339,336 | T→C | 5.0% | S3P (TCG→CCG) | pgpB → | phosphatidylglycerophosphatase B |
| RA | 1,377,597 | G→A | 5.0% | A256T (GCA→ACA) | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,395,089 | G→T | 6.0% | F278L (TTC→TTA) ‡ | ynaI ← | mechanosensitive channel protein, very small conductance |
| RA | 1,395,091 | A→T | 6.2% | F278I (TTC→ATC) ‡ | ynaI ← | mechanosensitive channel protein, very small conductance |
| RA | 1,395,094 | A→C | 5.5% | Y277D (TAT→GAT) | ynaI ← | mechanosensitive channel protein, very small conductance |
| RA | 1,396,083 | T→A | 6.1% | V3D (GTC→GAC) | insH1 → | IS5 transposase and trans‑activator |
| RA | 1,413,829 | G→A | 5.6% | C33C (TGC→TGT) | ralR ← | Rac prophage; restriction alleviation protein |
| RA | 1,662,350 | C→T | 100% | P599S (CCC→TCC) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,708,805 | T→A | 30.1% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,765,160 | C→G | 5.8% | intergenic (‑38/+62) | ydiH ← / ← menI | uncharacterized protein/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,806,340 | C→T | 100% | intergenic (‑257/‑30) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| RA | 1,806,700 | G→A | 100% | A111T (GCG→ACG) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,864,997 | C→T | 5.3% | E214K (GAA→AAA) | yeaE ← | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,869,015 | C→T | 6.0% | R21C (CGT→TGT) | yeaH → | UPF0229 family protein |
| RA | 1,963,048 | T→C | 5.2% | Q668R (CAG→CGG) | flhA ← | putative flagellar export pore protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 5.6% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 2,148,023 | G→A | 7.1% | G117D (GGC→GAC) | yegD → | Hsp70 chaperone family protein |
| RA | 2,149,510 | T→C | 5.9% | E492E (GAA→GAG) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,189,705 | A→G | 5.3% | D402D (GAT→GAC) | yehB ← | putative outer membrane protein |
| RA | 2,248,399 | T→A | 5.5% | Q45L (CAG→CTG) | lysP ← | lysine transporter |
| RA | 2,273,931 | T→A | 5.3% | I523N (ATC→AAC) | yejA → | microcin C ABC transporter periplasmic binding protein |
| RA | 2,342,538 | G→C | 5.7% | G544G (GGC→GGG) | yfaL ← | adhesin |
| RA | 2,357,653 | A→G | 6.5% | L250L (CTA→CTG) | yfaD → | transposase_31 family protein |
| RA | 2,357,836 | G→A | 7.0% | pseudogene (33/198 nt) | ypaA → | pseudogene, C‑terminal fragment, Transposase_31 family |
| RA | 2,486,190 | A→G | 5.8% | E606G (GAA→GGA) | evgS → | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| RA | 2,586,450 | C→A | 6.1% | L240L (CTC→CTA) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,596,873 | Δ1 bp | 5.1% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 5.3% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,616,314 | A→G | 5.8% | Q74R (CAA→CGA) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,649,275 | C→T | 5.5% | A1005T (GCA→ACA) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,656,820 | C→G | 5.9% | Q88H (CAG→CAC) | fdx ← | [2Fe‑2S] ferredoxin |
| RA | 2,662,549 | A→G | 5.3% | intergenic (‑418/+34) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,662,550 | A→C | 5.0% | intergenic (‑419/+33) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,662,556 | A→G | 5.1% | intergenic (‑425/+27) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,662,560 | C→T | 7.8% | intergenic (‑429/+23) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,691,173 | A→T | 7.1% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,932,437 | C→T | 5.3% | G193S (GGT→AGT) | fucO ← | L‑1,2‑propanediol oxidoreductase |
| RA | 2,962,391 | A→G | 5.5% | L13P (CTG→CCG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,984,802 | G→A | 7.4% | A264V (GCA→GTA) | yqeF ← | short chain acyltransferase |
| RA | 3,154,675 | T→A | 5.1% | I182F (ATC→TTC) | yqhC ← | transcriptional activator of yqhD |
| RA | 3,183,345:1 | +T | 5.7% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 5.7% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,270,193 | C→T | 6.7% | intergenic (+591/+23) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,194 | G→T | 9.3% | intergenic (+592/+22) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,195 | A→C | 7.3% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,196 | A→G | 6.0% | intergenic (+594/+20) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,386,794 | G→C | 6.3% | T465T (ACC→ACG) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| JC JC | 3,560,930 | IS5 (+) +4 bp | 100% | coding (520‑523/831 nt) | glpG ← | rhomboid intramembrane serine protease |
| RA | 3,663,547 | T→C | 5.4% | intergenic (+20/+343) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,553 | A→C | 5.3% | intergenic (+26/+337) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,555 | G→T | 5.6% | intergenic (+28/+335) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,556 | A→C | 5.5% | intergenic (+29/+334) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,558 | G→T | 5.3% | intergenic (+31/+332) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,564 | G→A | 5.4% | intergenic (+37/+326) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,691,089 | G→T | 5.2% | Q507K (CAG→AAG) | bcsB ← | regulator of cellulose synthase, cyclic di‑GMP binding |
| RA | 3,864,621 | A→T | 5.4% | S551R (AGT→AGA) | yidE ← | putative transporter |
| RA | 3,959,515 | T→A | 7.8% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 4,187,214 | A→C | 100% | D622A (GAC→GCC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,195,080 | A→G | 7.0% | Y340Y (TAT→TAC) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,296,060 | C→T | 34.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,303,758 | A→G | 5.3% | S118P (TCG→CCG) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,426,592 | T→A | 7.0% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,606,239 | A→G | 25.0% | noncoding (48/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423764–3424234 | 3424573–3424238 | 5–810 | 35 [29] | [30] 31 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4107539 | 4108512 | 974 | 31 [30] | [29] 31 | [pfkA] | [pfkA] |
| * | * | ÷ | NC_000913 | 4144034 | 4147099 | 3066 | 32 [30] | [30] 31 | [pflD]–[pflC] | [pflD],[pflC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 212286 = | 73 (0.890) | 4 (0.050) | 4/250 | NT | 5.6% | intergenic (+20/‑45) | yaeR/tilS | putative lyase/tRNA(Ile)‑lysidine synthetase |
| ? | NC_000913 | 212307 = | 66 (0.850) | intergenic (+41/‑24) | yaeR/tilS | putative lyase/tRNA(Ile)‑lysidine synthetase | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 4 (0.050) | 4/250 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1097172 = | NA (NA) | 5 (0.060) | 5/258 | NT | 13.4% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097188 = | 33 (0.400) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 49 (0.600) | 28 (0.390) | 27/232 | NT | 41.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 37 (0.510) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 49 (0.600) | 29 (0.400) | 26/232 | NT | 42.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 37 (0.510) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 98 (1.230) | 75/256 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 2035286 = | 71 (0.860) | 4 (0.050) | 4/240 | NT | 5.9% | intergenic (+43/‑549) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone |
| ? | NC_000913 | 2035318 = | 64 (0.860) | intergenic (+75/‑517) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone | |||||
| * | ? | NC_000913 | = 2283740 | 43 (0.520) | 4 (0.050) | 4/250 | NT | 8.9% | coding (208/1008 nt) | yejK | spermidine nucleoid‑associated protein |
| ? | NC_000913 | = 2283746 | 41 (0.530) | coding (202/1008 nt) | yejK | spermidine nucleoid‑associated protein | |||||
| * | ? | NC_000913 | = 2518072 | 38 (0.460) | 5 (0.060) | 4/262 | NT | 10.2% | noncoding (45/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | = 2518206 | 50 (0.610) | noncoding (26/76 nt) | alaW | tRNA‑Ala | |||||
| * | ? | NC_000913 | = 2726205 | 0 (0.000) | 3 (0.040) | 3/252 | NT | 100% | intergenic (‑17/+76) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2726217 | NA (NA) | intergenic (‑29/+64) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 2855633 | 75 (0.910) | 5 (0.060) | 3/248 | NT | 6.6% | coding (1296/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator |
| ? | NC_000913 | = 2855651 | 71 (0.920) | coding (1314/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator | |||||
| * | ? | NC_000913 | 3261397 = | 78 (0.950) | 4 (0.050) | 3/256 | NT | 5.0% | coding (1022/2295 nt) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| ? | NC_000913 | 3261423 = | 75 (0.940) | coding (996/2295 nt) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase | |||||
| * | ? | NC_000913 | 3423376 = | 96 (1.170) | 11 (0.140) +TTGATGT |
5/250 | NT | 11.9% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423672 = | 76 (0.920) | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3427078 = | NA (NA) | 3 (0.040) | 3/246 | NT | 100% | noncoding (75/77 nt) | ileU | tRNA‑Ile |
| ? | NC_000913 | = 4037236 | 0 (0.000) | intergenic (+19/‑24) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 3650712 = | NA (NA) | 3 (0.040) | 3/250 | NT | NA | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3650744 = | NA (NA) | noncoding (33/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3832178 = | NA (NA) | 3 (0.040) | 3/244 | NT | NA | noncoding (1/27 nt) | REP277 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP277 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3832205 = | NA (NA) | intergenic (+39/+14) | yicH/yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase | |||||
| * | ? | NC_000913 | = 3876111 | 95 (1.150) | 5 (0.070) | 5/244 | NT | 5.4% | intergenic (+17/+29) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase |
| ? | NC_000913 | = 3876122 | 88 (1.160) | intergenic (+28/+18) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase | |||||
| * | ? | NC_000913 | 3898629 = | NA (NA) | 3 (0.040) | 3/248 | NT | NA | intergenic (+20/+42) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase |
| ? | NC_000913 | 3898659 = | NA (NA) | intergenic (+50/+12) | cbrC/yieK | UPF0167 family protein/putative 6‑phosphogluconolactonase | |||||
| * | ? | NC_000913 | = 3986614 | 86 (1.040) | 5 (0.070) | 5/242 | NT | 5.8% | noncoding (183/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913 | = 3986622 | 83 (1.100) | noncoding (191/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913 | = 4040683 | 69 (0.840) | 9 (0.110) | 4/260 | NT | 9.7% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 100 (1.230) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4168341 | 46 (0.560) | 3 (0.040) | 3/244 | NT | 7.1% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 36 (0.470) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 4200145 = | 78 (0.950) | 4 (0.050) | 3/242 | NT | 5.2% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | NC_000913 | 4200182 = | 75 (0.990) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||