mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 692 | A→G | 6.4% | N119S (AAC→AGC) | thrA → | Bifunctional aspartokinase/homoserine dehydrogenase 1 |
| RA | 24,992 | G→A | 6.8% | A868T (GCT→ACT) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 73,807 | C→T | 6.4% | D239N (GAT→AAT) | thiP ← | thiamine/thiamine pyrophosphate ABC transporter permease |
| RA | 97,073 | Δ1 bp | 7.1% | coding (1072/1083 nt) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
| RA | 98,832 | C→T | 6.7% | L144L (CTG→TTG) | ftsW → | putative lipid II flippase; integral membrane protein; FtsZ ring stabilizer |
| RA | 99,900 | A→G | 5.9% | Q86R (CAG→CGG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 120,154 | Δ1 bp | 5.7% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 5.7% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 123,061 | C→T | 100% | R15R (CGC→CGT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 145,596 | G→A | 5.0% | V172V (GTG→GTA) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 167,992 | C→A | 79.5% | S170Y (TCC→TAC) | fhuA → | ferrichrome outer membrane transporter |
| RA | 170,457 | T→A | 6.8% | I227N (ATT→AAT) | fhuC → | iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 177,739 | C→T | 7.8% | D242N (GAC→AAC) | btuF ← | vitamin B12 ABC transporter periplasmic binding protein |
| RA | 209,806 | T→C | 5.2% | L43P (CTG→CCG) | ldcC → | lysine decarboxylase 2, constitutive |
| RA | 238,653 | C→A | 100% | L28F (TTG→TTT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 272,201 | A→G | 6.7% | intergenic (+12/‑379) | insN → / → eyeA | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/novel sRNA, function unknown, CP4‑6 propahge |
| RA | 276,134 | G→T | 9.9% | V270V (GTG→GTT) | mmuP → | CP4‑6 prophage; putative S‑methylmethionine transporter |
| RA | 289,256 | G→C | 7.7% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 329,703 | A→T | 5.9% | K81* (AAG→TAG) | betT → | choline transporter of high affinity |
| RA | 370,891 | C→A | 5.9% | P205P (CCC→CCA) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 410,922:1 | +G | 6.2% | coding (779/909 nt) | mak → | manno(fructo)kinase |
| RA | 410,927 | Δ1 bp | 5.7% | coding (784/909 nt) | mak → | manno(fructo)kinase |
| RA | 494,359 | T→A | 5.6% | V95E (GTA→GAA) | ybaB → | DNA‑binding protein, putative nucleoid‑associated protein |
| RA | 510,399 | C→T | 6.1% | L327L (CTG→CTA) | copA ← | copper transporter |
| RA | 514,292 | C→T | 6.1% | S100S (TCC→TCT) | cueR → | copper‑responsive regulon transcriptional regulator |
| RA | 535,390 | T→C | 5.5% | V492A (GTG→GCG) | gcl → | glyoxylate carboligase |
| RA | 596,677 | C→T | 5.9% | Q360* (CAG→TAG) | cusC → | copper/silver efflux system, outer membrane component |
| RA | 600,300 | Δ1 bp | 6.2% | coding (1587/3144 nt) | cusA → | copper/silver efflux system, membrane component |
| RA | 616,676 | C→T | 6.9% | D840D (GAC→GAT) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 616,888 | C→T | 6.5% | S911L (TCG→TTG) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 696,952 | T→C | 5.2% | intergenic (‑13/+11) | glnU ← / ← leuW | tRNA‑Gln/tRNA‑Leu |
| RA | 725,836 | Δ1 bp | 5.7% | coding (1201/2049 nt) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 732,414 | G→A | 7.1% | R944R (AGG→AGA) | rhsC → | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 745,590 | C→T | 5.2% | S142S (AGC→AGT) | ybgL → | UPF0271 family protein |
| RA | 801,498 | T→A | 7.6% | V247D (GTT→GAT) | ybhH → | putative PrpF family isomerase |
| RA | 810,502 | A→G | 6.1% | Y41C (TAT→TGT) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 839,232 | T→C | 6.0% | intergenic (‑25/+17) | ybiX ← / ← fiu | Fe(II)‑dependent oxygenase superfamily protein/catecholate siderophore receptor |
| RA | 850,996 | C→A | 6.3% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 852,893 | C→T | 6.0% | Q35Q (CAG→CAA) | mntS ← | Mn(2)‑response protein, MntR‑repressed |
| RA | 854,855 | T→C | 5.3% | N297S (AAC→AGC) | ldtB ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 860,151 | A→G | 5.4% | intergenic (‑123/+23) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 860,154 | A→T | 6.4% | intergenic (‑126/+20) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 860,157 | C→T | 5.4% | intergenic (‑129/+17) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 861,508 | A→T | 5.2% | S367T (TCT→ACT) | ybiW ← | putative pyruvate formate lyase |
| RA | 909,353 | G→A | 74.0% | A566V (GCG→GTG) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| RA | 909,422 | G→A | 18.2% | A543V (GCC→GTC) | poxB ← | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| JC JC | 911,086 | IS2 (–) +5 bp | 89.1% | intergenic (‑37/+92) | poxB ← / ← hcr | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding/HCP oxidoreductase, NADH‑dependent |
| RA | 915,080 | G→C | 6.2% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 6.2% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 937,130 | G→T | 6.3% | E1303* (GAA→TAA) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 943,126 | A→G | 5.7% | E723G (GAA→GGA) | dmsA → | dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 951,885 | T→G | 5.6% | D557A (GAC→GCC) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 964,148 | T→C | 5.5% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 5.5% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 5.5% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 965,473 | T→A | 5.0% | L385Q (CTG→CAG) | ycaI → | ComEC family inner membrane protein |
| RA | 1,018,983 | A→T | 8.1% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 8.1% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,035,337 | T→A | 6.8% | L91Q (CTG→CAG) | hyaC → | hydrogenase 1, b‑type cytochrome subunit |
| RA | 1,061,193 | G→A | 5.5% | T646T (ACG→ACA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,100,789 | G→T | 9.8% | intergenic (+2/+62) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,791 | G→C | 9.8% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 9.9% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,131,310 | A→T | 9.8% | N98I (AAT→ATT) | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,134,661 | A→G | 5.8% | intergenic (+104/‑68) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,668 | T→A | 5.9% | intergenic (+111/‑61) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,669 | T→A | 5.9% | intergenic (+112/‑60) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,186,039 | G→A | 7.5% | V66I (GTC→ATC) | pepT → | peptidase T |
| RA | 1,196,220 | C→T | 8.2% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,232 | C→T | 7.4% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,231,314 | Δ1 bp | 5.5% | coding (129/1269 nt) | umuC → | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| RA | 1,272,535 | C→T | 5.8% | A10V (GCC→GTC) | chaC → | cation transport regulator |
| RA | 1,286,917 | G→C | 7.3% | intergenic (+391/+149) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,321,474 | A→T | 7.8% | V491V (GTT→GTA) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,394 | C→G | 7.1% | D185H (GAC→CAC) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,396 | A→T | 8.5% | I184N (ATT→AAT) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,398 | C→G | 7.0% | V183V (GTG→GTC) | trpE ← | component I of anthranilate synthase |
| RA | 1,337,426 | C→T | 6.5% | G532G (GGC→GGT) | acnA → | aconitate hydratase 1; aconitase A |
| RA | 1,428,527 | T→C | 6.2% | Q67R (CAG→CGG) | insH1 ← | IS5 transposase and trans‑activator |
| RA | 1,439,056 | T→C | 6.1% | S577G (AGC→GGC) | pfo ← | pyruvate‑flavodoxin oxidoreductase |
| RA | 1,446,548 | G→A | 6.9% | R246C (CGT→TGT) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,465,487 | T→C | 5.4% | pseudogene (96/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,514,531 | T→C | 6.0% | L234P (CTG→CCG) | ydcU → | putative ABC transporter permease |
| RA | 1,534,897 | A→T | 7.7% | intergenic (+28/+68) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,898 | A→T | 7.7% | intergenic (+29/+67) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,904 | T→G | 7.6% | intergenic (+35/+61) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,905 | T→C | 7.6% | intergenic (+36/+60) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,540,347 | C→T | 5.9% | G748G (GGG→GGA) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,581,360 | A→G | 5.0% | Y389H (TAT→CAT) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
| RA | 1,654,593 | C→T | 6.5% | W183* (TGG→TGA) | rspA ← | bifunctional D‑altronate/D‑mannonate dehydratase |
| RA | 1,708,844 | C→G | 18.2% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,725,445 | G→A | 5.6% | A63V (GCG→GTG) | ydhF ← | putative oxidoreductase |
| RA | 1,779,124 | A→G | 6.9% | S60P (TCT→CCT) | ydiP ← | putative DNA‑binding transcriptional regulator |
| RA | 1,799,167 | A→C | 5.2% | intergenic (‑225/+59) | pheS ← / ← pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| RA | 1,799,168 | C→A | 5.4% | intergenic (‑226/+58) | pheS ← / ← pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| RA | 1,799,169 | T→G | 5.4% | intergenic (‑227/+57) | pheS ← / ← pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| RA | 1,799,170 | G→T | 5.4% | intergenic (‑228/+56) | pheS ← / ← pheM | phenylalanine tRNA synthetase, alpha subunit/phenylalanyl‑tRNA synthetase operon leader peptide |
| RA | 1,819,955 | C→T | 5.3% | T420T (ACG→ACA) | chbC ← | N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS |
| RA | 1,883,764 | A→G | 6.5% | I193V (ATC→GTC) | yeaV → | putative transporter |
| RA | 1,925,158 | T→C | 6.0% | N17N (AAT→AAC) | holE → | DNA polymerase III, theta subunit |
| RA | 1,945,057 | C→T | 8.3% | M100I (ATG→ATA) | ruvB ← | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,945,113 | T→A | 8.2% | N82Y (AAT→TAT) | ruvB ← | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,945,340 | C→T | 6.6% | R6H (CGT→CAT) | ruvB ← | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,947,884 | Δ1 bp | 5.9% | coding (268/741 nt) | yebC ← | UPF0082 family protein |
| RA | 1,968,908 | T→C | 6.0% | S153G (AGT→GGT) | cheR ← | chemotaxis regulator, protein‑glutamate methyltransferase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,002,222 | G→A | 5.5% | A462V (GCG→GTG) | fliC ← | flagellar filament structural protein (flagellin) |
| RA | 2,003,997 | T→A | 6.1% | A42A (GCT→GCA) | fliD → | flagellar filament capping protein |
| RA | 2,008,391 | T→C | 6.2% | W39R (TGG→CGG) | yedE → | UPF0394 family sulphur transport domain‑containing inner membrane protein |
| RA | 2,079,004 | G→C | 8.2% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,101,165 | G→T | 5.9% | S35Y (TCC→TAC) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
| RA | 2,124,684 | T→C | 5.5% | I355V (ATT→GTT) | wcaI ← | putative glycosyl transferase |
| RA | 2,124,811 | T→C | 6.0% | Q312Q (CAA→CAG) | wcaI ← | putative glycosyl transferase |
| RA | 2,157,507 | C→G | 8.0% | L749V (CTG→GTG) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,167,581 | C→T | 5.1% | intergenic (‑61/+21) | ogrK ← / ← yegZ | orphan Ogr protein, positive regulator of P2 growth/pseudogene, gpD phage P2‑like protein D |
| RA | 2,171,818 | C→T | 5.3% | intergenic (‑91/+15) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,180,168 | T→A | 6.4% | L25H (CTT→CAT) | yegU → | ADP‑ribosylglycohydrolase family protein |
| RA | 2,218,252 | C→T | 5.6% | A102A (GCG→GCA) | yehY ← | putative ABC transporter permease |
| RA | 2,240,008 | T→C | 7.3% | N114S (AAC→AGC) | mglB ← | methyl‑galactoside transporter subunit |
| RA | 2,253,194 | G→A | 7.3% | L318F (CTT→TTT) | nupX ← | nucleoside permease |
| RA | 2,305,264 | C→T | 6.5% | K497K (AAG→AAA) | mqo ← | malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,311,616 | C→T | 9.6% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 9.7% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,323,783 | Δ1 bp | 5.3% | coding (337/663 nt) | atoD → | acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,348,789 | C→A | 5.5% | intergenic (+21/+33) | yfaE → / ← inaA | ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase |
| RA | 2,348,790 | A→G | 5.5% | intergenic (+22/+32) | yfaE → / ← inaA | ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase |
| RA | 2,348,798 | T→A | 5.3% | intergenic (+30/+24) | yfaE → / ← inaA | ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase |
| RA | 2,348,803 | C→T | 5.1% | intergenic (+35/+19) | yfaE → / ← inaA | ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase |
| RA | 2,348,804 | T→G | 5.2% | intergenic (+36/+18) | yfaE → / ← inaA | ferredoxin involved with ribonucleotide reductase diferric‑tyrosyl radical (Y*) cofactor maintenance/acid‑inducible Kdo/WaaP family putative kinase |
| RA | 2,447,499 | C→T | 6.0% | intergenic (‑26/+9) | aroC ← / ← prmB | chorismate synthase/N5‑glutamine methyltransferase |
| RA | 2,449,200 | G→A | 5.8% | intergenic (+43/+28) | smrB → / ← yfcO | putative DNA endonuclease/DUF2544 family putative outer membrane protein |
| RA | 2,449,203 | T→C | 5.8% | intergenic (+46/+25) | smrB → / ← yfcO | putative DNA endonuclease/DUF2544 family putative outer membrane protein |
| RA | 2,468,115 | A→G | 6.4% | R87R (AGA→AGG) | gtrA → | CPS‑53 (KpLE1) prophage; bactoprenol‑linked glucose translocase/flippase |
| RA | 2,524,438 | A→T | 5.3% | G147G (GGT→GGA) | xapA ← | purine nucleoside phosphorylase 2; nicotinamide 1‑beta‑D‑riboside synthase |
| RA | 2,540,831 | T→A | 5.7% | A283A (GCA→GCT) | cysW ← | sulfate/thiosulfate ABC transporter permease |
| RA | 2,568,153 | A→T | 6.2% | intergenic (‑46/+171) | eutH ← / ← eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
| RA | 2,568,154 | A→T | 6.2% | intergenic (‑47/+170) | eutH ← / ← eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
| RA | 2,598,014 | A→T | 6.2% | S284S (TCT→TCA) | bamC ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,598,022 | G→A | 6.5% | P282S (CCG→TCG) | bamC ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,616,606 | G→C | 6.6% | A171A (GCG→GCC) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,616,609 | G→C | 6.7% | M172I (ATG→ATC) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,639,252 | A→T | 6.3% | V11E (GTA→GAA) | yfgM ← | ancillary SecYEG translocon subunit; putative anti‑RcsB factor |
| RA | 2,648,902 | G→C | 9.3% | A1129G (GCA→GGA) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,678,128 | T→C | 6.8% | E78E (GAA→GAG) | yphE ← | putative sugar ABC transporter ATPase |
| RA | 2,712,180 | C→T | 5.6% | A195A (GCG→GCA) | trmN ← | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase |
| RA | 2,720,495 | C→T | 5.3% | G181G (GGC→GGT) | pka → | protein lysine acetyltransferase |
| RA | 2,722,202 | T→G | 6.1% | D750E (GAT→GAG) | pka → | protein lysine acetyltransferase |
| RA | 2,722,492 | C→A | 75.4% | T847K (ACG→AAG) | pka → | protein lysine acetyltransferase |
| RA | 2,736,911 | C→T | 7.6% | intergenic (+28/‑243) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,913 | T→A | 7.8% | intergenic (+30/‑241) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,914 | T→A | 7.8% | intergenic (+31/‑240) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,916 | A→G | 7.7% | intergenic (+33/‑238) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,754,208 | C→T | 5.4% | E31K (GAA→AAA) | ratB ← | UPF0125 family protein |
| RA | 2,768,609 | T→C | 5.5% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 6.4% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,831,080 | C→T | 8.5% | V404M (GTG→ATG) | norR ← | anaerobic nitric oxide reductase DNA‑binding transcriptional activator |
| RA | 2,833,780 | C→T | 5.2% | Y435Y (TAC→TAT) | norV → | anaerobic nitric oxide reductase flavorubredoxin |
| RA | 2,839,621 | G→A | 6.4% | R33H (CGC→CAC) | ascF → | cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,857,681 | C→T | 5.2% | R197C (CGC→TGC) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,866,487 | G→C | 8.9% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 8.6% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,567 | G→A | 5.4% | R142R (CGC→CGT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,878,344 | C→T | 5.0% | intergenic (+726/+225) | iap → / ← ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| RA | 2,897,538 | A→G | 6.0% | I111I (ATT→ATC) | ygcS ← | putative MFS sugar transporter; membrane protein |
| RA | 2,907,979 | A→G | 5.2% | intergenic (‑38/+50) | eno ← / ← pyrG | enolase/CTP synthetase |
| RA | 3,004,410 | T→A | 5.5% | L459F (TTA→TTT) | ygeV ← | putative sigma‑54‑interacting transcriptional activator |
| RA | 3,043,920 | T→C | 5.0% | C87R (TGT→CGT) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,045,437 | A→G | 5.6% | D155D (GAT→GAC) | ygfF ← | putative NAD(P)‑dependent oxidoreductase |
| RA | 3,066,299:1 | +G | 5.0% | coding (875/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,309 | T→A | 5.4% | I289F (ATT→TTT) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,319 | Δ1 bp | 5.2% | coding (855/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,076,719 | G→A | 6.3% | V246V (GTC→GTT) | yggP ← | putative Zn‑binding dehydrogenase |
| RA | 3,128,066 | G→A | 5.0% | intergenic (‑45/‑206) | glcD ← / → glcC | glycolate oxidase subunit, FAD‑linked/glycolate‑inducible glc operon transcriptional repressor; autorepressor |
| RA | 3,155,228 | A→G | 5.0% | intergenic (‑10/‑127) | yqhC ← / → yqhD | transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent |
| RA | 3,164,022 | C→T | 7.7% | R651H (CGT→CAT) | parC ← | DNA topoisomerase IV, subunit A |
| RA | 3,180,506 | A→C | 5.9% | E29A (GAG→GCG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,217,580 | T→C | 5.0% | E499E (GAA→GAG) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| RA | 3,222,778 | A→G | 5.3% | N49S (AAT→AGT) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
| RA | 3,232,611 | C→T | 6.3% | A316V (GCT→GTT) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,239,609 | T→G | 6.4% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 6.0% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,241,781 | C→T | 6.3% | intergenic (‑37/+46) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,241,786 | C→T | 5.5% | intergenic (‑42/+41) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,241,790 | A→G | 5.2% | intergenic (‑46/+37) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,241,795 | A→G | 5.5% | intergenic (‑51/+32) | ygjV ← / ← uxaA | Imp‑YgjV family inner membrane protein/altronate hydrolase |
| RA | 3,270,194 | G→T | 7.8% | intergenic (+592/+22) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,195 | A→C | 8.0% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,196 | A→G | 7.0% | intergenic (+594/+20) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,292,913 | G→C | 6.9% | Y141* (TAC→TAG) | rsmI ← | 16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 3,335,746 | A→G | 6.0% | I250T (ATC→ACC) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,368,219 | G→A | 5.9% | T131T (ACG→ACA) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,220 | C→G | 5.9% | L132V (CTG→GTG) ‡ | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,221 | T→C | 6.0% | L132P (CTG→CCG) ‡ | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,382,150 | T→C | 6.0% | intergenic (+40/‑50) | degQ → / → degS | serine endoprotease, periplasmic/serine endoprotease, periplasmic |
| RA | 3,383,296 | T→C | 5.5% | intergenic (+29/+34) | degS → / ← mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| RA | 3,383,298 | T→C | 5.4% | intergenic (+31/+32) | degS → / ← mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| RA | 3,383,299 | G→A | 5.4% | intergenic (+32/+31) | degS → / ← mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| RA | 3,383,300 | T→G | 5.4% | intergenic (+33/+30) | degS → / ← mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| RA | 3,398,431 | A→G | 5.1% | F149L (TTC→CTC) | mreD ← | cell wall structural complex MreBCD transmembrane component MreD |
| RA | 3,473,626 | T→C | 5.0% | A152A (GCA→GCG) | rpsG ← | 30S ribosomal subunit protein S7 |
| RA | 3,485,143 | G→A | 6.6% | A218A (GCG→GCA) | prkB → | putative phosphoribulokinase |
| RA | 3,495,641 | A→G | 5.7% | E544G (GAA→GGA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,514,351 | A→G | 6.4% | D13D (GAT→GAC) | gph ← | phosphoglycolate phosphatase |
| RA | 3,519,557 | A→G | 5.3% | W383R (TGG→CGG) | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,520,486 | G→A | 5.1% | T73I (ACT→ATT) ‡ | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,520,487 | T→A | 5.8% | T73S (ACT→TCT) ‡ | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,520,488 | T→C | 5.1% | Q72Q (CAA→CAG) | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,563,154 | C→T | 6.0% | T381M (ACG→ATG) | glpD → | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,568,986 | G→A | 5.3% | R115C (CGC→TGC) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,575,191 | G→A | 5.5% | V41M (GTG→ATG) | yhgN → | UPF0056 family inner membrane protein |
| RA | 3,577,657 | A→G | 6.0% | intergenic (‑65/+74) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,577,660 | C→T | 5.9% | intergenic (‑68/+71) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,578,609 | T→G | 5.7% | I40L (ATT→CTT) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,578,610 | C→A | 6.8% | K39N (AAG→AAT) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,608,694 | T→A | 7.9% | intergenic (+45/+57) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 3,646,198 | G→A | 44.4% | A272T (GCC→ACC) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
| RA | 3,663,450 | A→T | 25.2% | T1013S (ACA→TCA) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,768,131 | A→T | 100% | pseudogene (911/945 nt) | rhsJ → | Rhs‑family protein |
| RA | 3,781,051 | C→G | 5.0% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,806,430 | C→A | 9.0% | R213L (CGC→CTC) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I |
| RA | 3,964,929 | C→T | 100% | E234E (GAG→GAA) | rhlB ← | ATP‑dependent RNA helicase |
| RA | 4,015,333 | A→T | 5.4% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,037,496 | A→T | 11.5% | intergenic (+161/‑23) | alaT → / → rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| RA | 4,041,216 | T→C | 5.2% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,217 | G→A | 5.1% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,220 | T→C | 5.1% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,221 | G→A | 5.1% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,066,671 | C→A | 6.7% | G175V (GGA→GTA) | yihP ← | putative 2,3‑dihydroxypropane‑1‑sulphonate exporter, membrane protein |
| RA | 4,068,014 | A→T | 5.6% | S421R (AGT→AGA) | yihQ ← | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase |
| RA | 4,106,105 | C→T | 5.2% | R96C (CGC→TGC) | cpxP → | inhibitor of the cpx response; periplasmic adaptor protein |
| RA | 4,109,196 | Δ1 bp | 5.9% | coding (363/990 nt) | sbp → | sulfate transporter subunit |
| RA | 4,125,059 | A→C | 6.0% | R584R (CGT→CGG) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,145,560 | A→G | 5.3% | V522V (GTA→GTG) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,148,661 | G→A | 10.2% | Y535Y (TAC→TAT) | eptC ← | LPS heptose I phosphoethanolamine transferase |
| RA | 4,172,005 | T→C | 5.3% | intergenic (+249/‑52) | rrfB → / → murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,177,171 | T→A | 5.7% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,198,900 | G→A | 6.0% | G37G (GGG→GGA) | nfi → | endonuclease V; deoxyinosine 3' endonuclease |
| RA | 4,296,060 | C→T | 31.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,448,424 | T→A | 5.2% | intergenic (+189/‑23) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,454,591 | G→A | 5.3% | intergenic (+13/+20) | yjfF → / ← fbp | putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I |
| RA | 4,454,592 | T→C | 5.4% | intergenic (+14/+19) | yjfF → / ← fbp | putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I |
| RA | 4,454,593 | G→A | 6.2% | intergenic (+15/+18) | yjfF → / ← fbp | putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I |
| RA | 4,454,594 | T→C | 5.4% | intergenic (+16/+17) | yjfF → / ← fbp | putative sugar ABC transporter permease/fructose‑1,6‑bisphosphatase I |
| RA | 4,483,658 | A→T | 5.8% | D60E (GAT→GAA) ‡ | valS ← | valyl‑tRNA synthetase |
| RA | 4,483,659 | T→A | 5.1% | D60V (GAT→GTT) ‡ | valS ← | valyl‑tRNA synthetase |
| RA | 4,530,631 | T→C | 5.0% | T341A (ACT→GCT) | sgcX ← | putative endoglucanase with Zn‑dependent exopeptidase domain |
| RA | 4,591,807 | T→A | 5.2% | S51T (TCC→ACC) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 123064 | 127549 | 4486 | 24 [23] | [21] 26 | [aceE]–[aceF] | [aceE],[aceF] |
| * | * | ÷ | NC_000913 | 3423753–3424533 | 3424533 | 1–781 | 25 [20] | [23] 25 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3682363 | 3683198 | 836 | 24 [23] | [23] 24 | dctA | C4‑dicarboxylic acid, orotate and citrate transporter |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 39999 = | 58 (0.740) | 4 (0.050) | 4/242 | NT | 7.1% | coding (388/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | NC_000913 | 40052 = | 49 (0.650) | coding (335/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
| * | ? | NC_000913 | 167090 = | 63 (0.800) | 4 (0.050) | 4/238 | NT | 6.3% | coding (2361/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase |
| ? | NC_000913 | 167109 = | 59 (0.790) | coding (2380/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 4 (0.050) | 3/238 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.080) | 4/234 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 5 (0.070) | 5/238 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 484189 | 62 (0.790) | 4 (0.060) | 4/230 | NT | 6.2% | coding (215/3150 nt) | acrB | multidrug efflux system protein |
| ? | NC_000913 | = 484206 | 65 (0.900) | coding (198/3150 nt) | acrB | multidrug efflux system protein | |||||
| * | ? | NC_000913 | 629047 = | 59 (0.750) | 3 (0.040) | 3/238 | NT | 5.4% | coding (497/747 nt) | entA | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
| ? | NC_000913 | 629104 = | 50 (0.670) | coding (554/747 nt) | entA | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase | |||||
| * | ? | NC_000913 | 1051877 = | 81 (1.030) | 4 (0.050) | 4/238 | NT | 5.1% | coding (31/231 nt) | ymcE | cold shock gene |
| ? | NC_000913 | 1051896 = | 73 (0.980) | coding (50/231 nt) | ymcE | cold shock gene | |||||
| * | ? | NC_000913 | 1207790 = | 17 (0.220) | 39 (0.570) | 34/220 | NT | 74.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 12 (0.170) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 18 (0.230) | 29 (0.420) | 24/220 | NT | 67.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 12 (0.170) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1723876 = | 50 (0.630) | 3 (0.040) | 3/242 | NT | 5.8% | coding (1756/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | 1723911 = | 49 (0.650) | coding (1791/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | NC_000913 | 1735666 = | 60 (0.760) | 4 (0.050) | 4/242 | NT | 6.7% | coding (289/582 nt) | sodB | superoxide dismutase, Fe |
| ? | NC_000913 | 1735725 = | 53 (0.700) | coding (348/582 nt) | sodB | superoxide dismutase, Fe | |||||
| * | ? | NC_000913 | 2135939 = | 70 (0.890) | 4 (0.050) | 4/242 | NT | 5.3% | coding (160/444 nt) | wzb | colanic acid production protein‑tyrosine‑phosphatase; Wzc‑P dephosphorylase |
| ? | NC_000913 | 2135989 = | 75 (0.990) | coding (110/444 nt) | wzb | colanic acid production protein‑tyrosine‑phosphatase; Wzc‑P dephosphorylase | |||||
| * | ? | NC_000913 | 2267505 = | 52 (0.660) | 4 (0.050) | 4/236 | NT | 7.8% | coding (1261/1467 nt) | yeiQ | putative NAD‑dependent D‑mannonate oxidoreductase |
| ? | NC_000913 | 2267539 = | 46 (0.620) | coding (1295/1467 nt) | yeiQ | putative NAD‑dependent D‑mannonate oxidoreductase | |||||
| * | ? | NC_000913 | 2432719 = | 43 (0.550) | 4 (0.050) | 4/238 | NT | 9.1% | coding (224/1269 nt) | folC | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase |
| ? | NC_000913 | 2432756 = | 39 (0.520) | coding (187/1269 nt) | folC | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase | |||||
| * | ? | NC_000913 | = 2440534 | 60 (0.760) | 4 (0.050) | 4/238 | NT | 6.3% | coding (1072/1221 nt) | fabB | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| ? | NC_000913 | = 2440556 | 62 (0.830) | coding (1050/1221 nt) | fabB | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I | |||||
| * | ? | NC_000913 | 2543915 = | 62 (0.790) | 4 (0.050) | 4/236 | NT | 6.2% | coding (709/792 nt) | ucpA | furfural resistance protein, putative short‑chain oxidoreductase |
| ? | NC_000913 | 2543976 = | 62 (0.840) | coding (648/792 nt) | ucpA | furfural resistance protein, putative short‑chain oxidoreductase | |||||
| * | ? | NC_000913 | = 2555488 | 50 (0.630) | 4 (0.050) | 4/236 | NT | 6.7% | coding (241/501 nt) | eutK | putative ethanol utilization carboxysome structural protein |
| ? | NC_000913 | = 2555515 | 64 (0.870) | coding (214/501 nt) | eutK | putative ethanol utilization carboxysome structural protein | |||||
| * | ? | NC_000913 | = 2728364 | NA (NA) | 4 (0.050) | 4/240 | NT | NA | noncoding (821/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2728377 | NA (NA) | noncoding (808/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3194740 | 63 (0.800) | 61 (0.780) | 50/250 | NT | 49.4% | noncoding (126/143 nt) | sibD | sRNA antisense regulator of toxic IbsD protein |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 3625588 | 20 (0.250) | 64 (0.820) | 48/250 | NT | 76.3% | intergenic (+74/+91) | yhhI/yhhJ | putative transposase/putative ABC transporter permease |
| ? | NC_000913 | 3720630 = | NA (NA) | pseudogene (3/185 nt) | mokA | pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS | |||||
| * | ? | NC_000913 | 3676971 = | 12 (0.150) | 3 (0.040) | 3/238 | NT | 22.8% | coding (1380/2061 nt) | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | 3677025 = | 9 (0.120) | coding (1326/2061 nt) | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein | |||||
| * | ? | NC_000913 | 4085413 = | 67 (0.850) | 3 (0.040) | 3/238 | NT | 5.1% | coding (410/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit |
| ? | NC_000913 | 4085454 = | 49 (0.660) | coding (369/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit | |||||
| * | ? | NC_000913 | = 4271029 | 126 (1.600) | 7 (0.100) | 7/234 | NT | 5.4% | intergenic (+15/+20) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| ? | NC_000913 | = 4271034 | 128 (1.750) | intergenic (+20/+15) | yjbR/uvrA | DUF419 family protein/ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | |||||
| * | ? | NC_000913 | 4303065 = | 126 (1.600) | 7 (0.090) | 6/240 | NT | 5.8% | coding (14/2052 nt) | mdtO | membrane translocase (MDR) of MdtNOP efflux pump, PET family |
| ? | NC_000913 | 4303092 = | 109 (1.450) | coding (1018/1032 nt) | mdtN | membrane fusion protein of efflux pump | |||||