mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 126,378 | G→T | 5.7% | V228V (GTG→GTT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,384 | C→T | 5.4% | D230D (GAC→GAT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,393 | C→A | 5.1% | A233A (GCC→GCA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,405 | A→G | 6.0% | S237S (TCA→TCG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 248,263 | G→A | 5.1% | intergenic (+129/+95) | rayT → / ← lfhA | RAYT REP element‑mobilizing transposase; TnpA(REP)/pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 289,256 | G→C | 5.5% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 340,050 | G→T | 5.3% | intergenic (+307/‑115) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 340,058 | T→C | 5.2% | intergenic (+315/‑107) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 552,371 | G→A | 6.1% | P75L (CCG→CTG) | purK ← | N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 617,560 | T→C | 5.3% | L1135P (CTG→CCG) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 644,030 | A→G | 6.2% | intergenic (‑63/+167) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,034 | T→C | 6.2% | intergenic (‑67/+163) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,036 | A→T | 6.7% | intergenic (‑69/+161) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,038 | G→A | 6.5% | intergenic (‑71/+159) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,042 | C→T | 6.5% | intergenic (‑75/+155) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 723,731 | A→G | 6.0% | D228D (GAT→GAC) | kdpD ← | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| RA | 872,398 | C→T | 5.5% | A170V (GCA→GTA) | gsiD → | glutathione ABC transporter permease |
| RA | 894,727 | C→A | 5.6% | A315D (GCC→GAC) | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 908,438 | T→C | 6.1% | N286S (AAT→AGT) | ltaE ← | L‑allo‑threonine aldolase, PLP‑dependent |
| RA | 944,403 | T→C | 5.1% | V124A (GTT→GCT) | dmsC → | dimethyl sulfoxide reductase, anaerobic, subunit C |
| RA | 953,509 | T→C | 5.0% | T16A (ACC→GCC) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 991,864 | G→A | 5.9% | A415T (GCA→ACA) | pepN → | aminopeptidase N |
| RA | 1,021,175 | A→G | 5.2% | Q13R (CAA→CGA) | sxy → | CRP‑S‑dependent promoter expression factor |
| RA | 1,026,727 | G→A | 5.2% | P97S (CCG→TCG) | mgsA ← | methylglyoxal synthase |
| JC JC | 1,042,085 | IS2 (+) +5 bp | 14.6% | coding (2122‑2126/2181 nt) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,129,271 | T→C | 6.8% | L478S (TTA→TCA) | murJ → | putative lipid II flippase |
| RA | 1,207,557 | C→T | 5.8% | N19N (AAC→AAT) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,286,965 | A→G | 11.1% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,971 | G→A | 10.4% | intergenic (+445/+95) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,974 | C→T | 10.1% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,983 | A→G | 7.4% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,359,878 | T→G | 6.2% | Q344P (CAG→CCG) | puuA ← | glutamate‑‑putrescine ligase |
| RA | 1,376,207 | C→A | 8.0% | A58A (GCC→GCA) | ycjR → | putative TIM alpha/beta barrel enzyme |
| RA | 1,376,208 | T→G | 7.1% | C59G (TGC→GGC) | ycjR → | putative TIM alpha/beta barrel enzyme |
| RA | 1,466,138 | G→A | 5.4% | pseudogene (747/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,568,915 | G→A | 6.0% | intergenic (‑92/+39) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,917 | A→T | 5.9% | intergenic (‑94/+37) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,919 | T→C | 5.8% | intergenic (‑96/+35) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,729,182 | T→C | 6.0% | A32A (GCT→GCC) | lhr → | putative ATP‑dependent helicase |
| RA | 1,764,687 | T→C | 9.4% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 9.6% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 9.6% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 9.6% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 9.4% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,794,341 | T→A | 5.8% | D271V (GAT→GTT) | btuC ← | vitamin B12 ABC transporter permease |
| RA | 1,805,970 | G→A | 6.3% | S38S (AGC→AGT) | ydiY ← | acid‑inducible putative outer membrane protein |
| JC JC | 1,806,297 | IS1 (–) +9 bp | 100% | intergenic (‑214/‑65) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| JC JC | 1,806,309 | IS5 (–) +4 bp | 68.4% | intergenic (‑226/‑58) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| RA | 1,806,319 | C→T | 100% | intergenic (‑236/‑51) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| RA | 1,806,979 | G→A | 83.0% | D204N (GAT→AAT) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,807,169 | C→T | 5.7% | A267V (GCA→GTA) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,807,226 | C→G | 12.1% | A286G (GCC→GGC) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,808,846 | C→A | 5.2% | G130W (GGG→TGG) | yniB ← | putative inner membrane protein |
| RA | 1,825,936 | T→A | 5.5% | intergenic (‑311/+19) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,825,937 | G→T | 5.8% | intergenic (‑312/+18) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,825,938 | A→C | 5.8% | intergenic (‑313/+17) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,825,939 | T→A | 6.0% | intergenic (‑314/+16) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,829,322 | A→C | 6.6% | L138R (CTG→CGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,328 | C→G | 6.5% | G136A (GGC→GCC) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,867,325 | G→A | 5.0% | E140K (GAG→AAG) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,927,702 | A→T | 5.5% | S380T (TCT→ACT) | ptrB ← | protease II |
| RA | 1,950,085 | G→C | 5.6% | S146R (AGC→AGG) | aspS ← | aspartyl‑tRNA synthetase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,982,500 | T→C | 6.9% | intergenic (‑113/+54) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 1,982,501 | T→C | 6.8% | intergenic (‑114/+53) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 1,982,504 | G→A | 7.0% | intergenic (‑117/+50) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 1,982,505 | G→A | 7.0% | intergenic (‑118/+49) | otsB ← / ← araH | trehalose‑6‑phosphate phosphatase, biosynthetic/L‑arabinose ABC transporter permease |
| RA | 2,074,691 | C→G | 6.7% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,115,547 | A→G | 5.0% | L117P (CTG→CCG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,149,172 | G→A | 5.6% | A605V (GCG→GTG) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,566 | T→A | 5.8% | K333N (AAA→AAT) | fbaB ← | fructose‑bisphosphate aldolase class I |
| RA | 2,231,849 | T→A | 5.6% | H2Q (CAT→CAA) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,309,028 | G→A | 5.4% | T105M (ACG→ATG) | alkB ← | oxidative demethylase of N1‑methyladenine or N3‑methylcytosine DNA lesions |
| RA | 2,346,192 | C→T | 5.4% | A443V (GCC→GTC) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| RA | 2,352,970 | T→A | 6.7% | I108I (ATT→ATA) | glpA → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, large FAD/NAD(P)‑binding subunit |
| RA | 2,357,653 | A→G | 8.7% | L250L (CTA→CTG) | yfaD → | transposase_31 family protein |
| RA | 2,376,884 | C→T | 5.1% | E237K (GAA→AAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,397,483 | G→A | 5.5% | L895L (CTG→TTG) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,460,618 | C→T | 5.2% | intergenic (‑149/+32) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,560,976 | G→T | 19.5% | intergenic (+78/‑392) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,985 | C→A | 22.5% | intergenic (+87/‑383) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,579,154 | A→C | 5.0% | A163A (GCA→GCC) | talA → | transaldolase A |
| RA | 2,653,367 | G→A | 6.2% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 5.0% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,799,634 | A→G | 6.0% | intergenic (+21/+16) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,799,635 | T→A | 6.1% | intergenic (+22/+15) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,799,636 | C→T | 6.0% | intergenic (+23/+14) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,818,324 | G→A | 5.9% | intergenic (‑50/+149) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,947,465 | Δ1 bp | 14.6% | intergenic (+2/‑32) | metZ → / → metW | tRNA‑Met/tRNA‑Met |
| RA | 2,947,467 | A→C | 12.4% | intergenic (+4/‑30) | metZ → / → metW | tRNA‑Met/tRNA‑Met |
| RA | 3,324,952 | A→G | 5.7% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 5.6% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 5.7% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 5.3% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,708,427 | G→A | 5.5% | intergenic (‑722/+189) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,428 | T→A | 6.4% | intergenic (‑723/+188) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,429 | T→C | 6.6% | intergenic (‑724/+187) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,781,051 | C→G | 7.5% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,972,673 | A→C | 6.4% | E51A (GAG→GCG) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| MC JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,049,986 | G→T | 6.1% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 5.9% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 33.4% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,409,407 | T→A | 6.6% | S45T (TCT→ACT) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,410:1 | +A | 6.7% | coding (136/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,606,239 | A→G | 18.1% | noncoding (48/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423755–3424234 | 3424531–3424239 | 6–777 | 37 [34] | [34] 37 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4107541 | 4108513 | 973 | 37 [36] | [36] 37 | [pfkA] | [pfkA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 193444 = | 78 (0.820) | 4 (0.050) | 4/242 | NT | 5.2% | intergenic (+15/‑77) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| ? | NC_000913 | 193489 = | 73 (0.840) | intergenic (+60/‑32) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase | |||||
| * | ? | NC_000913 | = 225997 | NA (NA) | 3 (0.030) | 3/252 | NT | NA | noncoding (239/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 1207790 = | 32 (0.340) | 34 (0.410) | 32/230 | NT | 55.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 27 (0.330) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 31 (0.330) | 48 (0.580) | 39/230 | NT | 63.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 27 (0.330) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 112 (1.220) | 91/254 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1411899 = | 139 (1.470) | 20 (0.260) | 16/210 | NT | 15.6% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 106 (1.400) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2690411 | 60 (0.630) | 4 (0.050) | 4/246 | NT | 6.6% | coding (688/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
| ? | NC_000913 | = 2690416 | 56 (0.630) | coding (683/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR | |||||
| * | ? | NC_000913 | 3717215 = | 118 (1.250) | 6 (0.070) | 5/238 | NT | 5.5% | intergenic (+9/‑95) | yiaD/ghrB | multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B |
| ? | NC_000913 | 3717245 = | 101 (1.170) | intergenic (+39/‑65) | yiaD/ghrB | multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B | |||||
| * | ? | NC_000913 | = 4492131 | 58 (0.610) | 3 (0.030) | 3/252 | NT | 5.1% | coding (395/1320 nt) | idnT | L‑idonate and D‑gluconate transporter |
| ? | NC_000913 | = 4492165 | 55 (0.600) | coding (361/1320 nt) | idnT | L‑idonate and D‑gluconate transporter | |||||