Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
1 4 8
3 4 8
5 4 8
4 13 26

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 54 89
Multiple Base Substitutions 0 0
Deletions 5 5
Insertions 3 3
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 62 97

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 38 0 326.9 11315490 97.9% 11077864 91.0
A0 F0 I1 R1 9 0 335.3 11663380 97.5% 11371795 90.7
A1 F16 I0 R1 85 0 197.5 4743896 94.3% 4473493 138.3
A1 F16 I1 R1 9 0 28.1 657842 93.6% 615740 139.9
A1 F41 I0 R1 38 0 250.3 5754022 94.2% 5420288 134.0
A1 F41 I1 R1 11 0 26.2 606442 94.9% 575513 140.9
A1 F56 I0 R1 19 0 43.9 998620 94.5% 943695 140.9
A1 F56 I1 R1 11 0 18.4 473212 93.6% 442926 129.0
A1 F70 I0 R1 17 0 27.3 622620 94.5% 588375 140.9
A1 F70 I1 R1 12 0 27.5 645536 94.4% 609385 140.9
A3 F18 I0 R2 19 0 23.5 523274 98.7% 516471 140.9
A3 F18 I1 R1 9 0 30.2 693202 94.8% 657155 140.9
A3 F44 I0 R1 64 0 42.0 921266 98.7% 909289 141.0
A3 F44 I1 R1 12 0 24.7 574166 94.6% 543161 140.9
A3 F60 I0 R1 73 0 395.3 8837978 95.5% 8440268 141.0
A3 F60 I1 R1 14 0 18.2 455004 92.7% 421788 134.9
A3 F75 I0 R1 16 0 35.0 795252 94.4% 750717 140.9
A3 F75 I1 R1 13 0 22.6 534182 93.9% 501596 139.9
A5 F18 I0 R2 18 0 11.5 256338 98.4% 252236 141.0
A5 F18 I1 R1 9 0 25.9 593870 94.7% 562394 140.9
A5 F43 I0 R1 32 0 68.2 1528488 95.6% 1461234 139.9
A5 F43 I1 R1 9 0 18.9 431162 94.5% 407448 140.9
A5 F58 I0 R1 35 0 61.1 1410250 95.0% 1339737 139.9
A5 F58 I1 R1 12 0 20.5 473580 94.8% 448953 140.9
A5 F71 I0 R1 28 0 65.2 1510494 95.1% 1436479 141.0
A5 F71 I1 R1 31 0 24.1 564604 94.3% 532421 140.9

Mutation Needle Plot

Mutation Targets

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