Notes

Publication:

10.3389/fmicb.2018.01793

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
20 1 3
22 1 3
23 1 3
4 4 10

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 24 52
Multiple Base Substitutions 0 0
Deletions 8 44
Insertions 1 1
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 33 97

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 9 0 24.8 471414 97.6% 460100 257.0
A20 F176 I0 R1 55 0 106.4 1774576 98.9% 1755055 266.6
A20 F176 I1 R1 8 0 56.8 1989668 94.4% 1878246 142.9
A20 F176 I2 R1 7 0 38.8 1350312 94.5% 1276044 142.9
A22 F178 I0 R1 38 0 59.5 1016878 98.3% 999591 262.1
A22 F178 I1 R1 7 0 76.2 2645172 94.5% 2499687 142.5
A22 F178 I2 R1 8 0 55.3 1911620 94.6% 1808392 142.6
A23 F176 I0 R1 39 0 93.1 1538930 99.0% 1523540 272.0
A23 F176 I1 R1 8 0 40.2 1402628 93.9% 1317067 142.8
A23 F176 I2 R1 8 0 38.7 1353224 93.6% 1266617 142.8

Mutation Needle Plot

Mutation Targets

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