Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 4
2 3 4
3 2 3
4 3 4
5 12 16

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 22 58
Multiple Base Substitutions 0 0
Deletions 19 100
Insertions 3 36
Mobile Element Insertions 3 6
Amplifications 2 2
Gene Conversions 0 0
Inversions 0 0
Total 49 202

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 10 0 127.4 4288862 93.2% 3997219 148.1
A1 F13 I1 R1 9 0 38.6 1391170 96.7% 1345261 132.9
A1 F28 I1 R1 10 0 34.4 1304456 96.2% 1254886 127.6
A1 F65 I0 R1 116 0 83.1 2780604 97.7% 2716650 143.6
A1 F65 I1 R1 13 0 95.2 3398442 96.9% 3293090 136.9
A2 F6 I1 R1 11 0 37.5 1404108 96.7% 1357772 128.1
A2 F16 I1 R1 11 0 28.0 1029184 94.6% 973608 134.0
A2 F71 I0 R1 94 0 88.6 2956328 98.2% 2903114 142.9
A2 F71 I1 R1 16 0 107.5 3370384 98.1% 3306346 140.6
A3 F12 I1 R1 10 0 40.1 1412062 97.0% 1369700 135.4
A3 F56 I0 R1 119 0 93.1 3231142 97.2% 3140670 139.8
A3 F56 I1 R1 12 0 112.9 3855800 97.9% 3774828 136.8
A4 F5 I1 R1 9 0 42.6 1497946 97.3% 1457501 135.1
A4 F14 I1 R1 12 0 36.6 1328792 96.3% 1279626 134.0
A4 F66 I0 R1 127 0 87.1 2939662 97.5% 2866170 142.1
A4 F66 I1 R1 12 0 96.1 3265186 96.7% 3157434 143.4

Mutation Needle Plot

Mutation Targets

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