Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 3 4
2 3 4
3 4 5
4 3 4
4 13 17

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 28 80
Multiple Base Substitutions 0 0
Deletions 15 130
Insertions 3 34
Mobile Element Insertions 10 44
Amplifications 7 7
Gene Conversions 0 0
Inversions 0 0
Total 63 295

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F11 I1 R1 14 0 43.3 1732204 95.7% 1657719 122.3
A1 F33 I1 R1 16 0 30.3 1339016 95.2% 1274743 112.0
A1 F72 I0 R1 97 0 97.5 3322672 98.0% 3256218 140.9
A1 F72 I1 R1 14 0 98.9 3382490 97.5% 3297927 140.1
A2 F11 I1 R1 15 0 43.1 1622188 96.5% 1565411 127.3
A2 F33 I1 R1 23 0 35.1 1378992 95.0% 1310042 124.1
A2 F73 I0 R1 132 0 75.9 2634066 97.4% 2565580 143.6
A2 F73 I1 R1 16 0 105.1 3601628 97.3% 3504384 140.4
A3 F12 I1 R1 16 0 34.7 1364998 95.3% 1300843 125.1
A3 F25 I2 R1 15 0 37.8 1449102 96.6% 1399832 125.6
A3 F34 I2 R1 15 0 36.8 1424632 95.4% 1359098 126.1
A3 F75 I0 R1 89 0 94.9 3159934 98.0% 3096735 144.0
A3 F75 I1 R1 18 0 101.0 3428476 97.2% 3332478 141.5
A4 F9 I1 R1 15 0 36.8 1385066 95.5% 1322738 129.6
A4 F30 I1 R1 17 0 32.7 1267382 95.3% 1207815 125.3
A4 F70 I0 R1 119 0 101.6 3446078 97.9% 3373710 141.6
A4 F70 I1 R1 17 0 99.6 3381834 97.7% 3304051 141.0

Mutation Needle Plot

Mutation Targets

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